>input_sequence_81392
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-------------------------------------------------ATC------TCAAATAGCTGCGCCACACCAA
CAGCAGAACCTTAACCAGTTACCCGGCCACTTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCACTGCGACATTCC
TGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTGCACGGTGGC
GAGCAGTGGTGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAGGCGACGCGGGTGC
A--CCTGCCTCAACTCCCAGGCCTGGAATGTGATGATAGTCCGAGCTTATAATAGAATAAA-------------------
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>chr2A_1_TraesCS2A01G350600
TATACCTTAATACTAGAGAGTTTGCGCATGTGCATATGATACTAAGGGAGAATATCTGGTGCACTGATTCATCAAACTCG
TGTAGAACATTTTAAAATATTCATTTAATTTTTTAGCATATTCAGACAATGTTGATGCATGTTCATAAAATTCAAATCAA
AATTTGAAACATAGCTTGGAAAATAAAAAA-CAAATTCAACACTAAATTGCATATAGCACAAGTTGGACTTTAGATTTAG
CCCATTATCGGACAAATGTCAAATTTGTCAGTTGTATTCTCGAGTAATGTTTCAAATTTTAATATGAAATTTTGTGACAA
CATATATTAATGTTGTCTCAATGTCCTATAATTTTTTCAGATTTTATCAAACATTTAAATTAGTTGTGACATCCGGTGCA
TCGATAGCATCACAAGGGTGGGGTACTAGATACATTCCCACGATAGCCGAGATTGCCACTCGGTTCATCGGCTGATCGCT
ACGCAGCAGTAGCTTAGACCTCCTTTGCTTTACAGGAATTTTAAA-GGGAAAAATTATAGAAAATTTTATTAGTGCCCTT
TGGTTTATATAGAAATGGATTCCTATTTCTATGTAGGATAAGAACCAATCCATCACATTACAAAAGAGAATATTAGCCTA
GATTAAATGAAAAGATTCCTATGCTACACATCAAATTGTATATCTTTCCCTGTAGAAATTAAGATACATATCATTTTACC
TCCTATCCTATGAACCAG----AAAAAGGCCTTTGATAGATAGACA--TTTAGATAGCCCGGTCAGCAGCCACCGTTCCG
GACCGGGGGCGTCATCACTGTTGGCCGTGCGTGGCCAATGCAGTTGTGCCTATATATGGCTAACAAACTGAGATAAGATG
CGCGTCACCATTTGCGTATGTGTAACGTCCAAGCGTAATCTCATCATCACGTCCAAGCGTAATTTCATAT-TTCCTTTTC
TGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCGCCACACCAA
CAGCAGAACCTTAACCAGTTACCCGGCCACTTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCACTGCGACATTCC
TGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTGCACGGTGGC
GAGCAGTGGTGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAGGCGACGCGGGTGC
A--CCTGCCTCAACTCCCAGGCCTGGAATGTGATGATAGTCCGAGCTTATAATAGAATAAAGCTAAGTAAGTGAATTTTA
CTGGGAGCTAAGTAAAGCAACGCTGCCGTGTAATGGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATGGCTAATACGTACCGAGTGAGTACCTCGTAGAT
GGCCAGAGCAGTGTTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTCGATATATTTGAATCAAAAATG
TTTTACCGAGTTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACTGCCTAGCCTACAAAAACGTCTTGTA
TTTTGATATGAAGGTAATA---TCAACTA---TAAAAATGAATATAGTCGGCTCCAGTAGGGCAGCGGTGACAACAACGC
GTCAGTGACTCGTTCTAACACCGGTAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAATTTTTATTATGTTTAAGGTG
CTTTGTACTTTCGGTGAACATTGATAATATATTTGGATCATTTTCATCAAAAAAATGAATTTGAAATAAATTGAGAGAGA
GAGAGAGAGCACGCAGTGCTAGGAGGCCAAGGTGAGAGCGGCCCGGATGGGCACGACATTACCGGCAAAGGCGAGGCCGC
GACGTGACCCATGAGGGTTTGATAAGGACCTCACCAGATCTGAGAGGTAGGGGGAAAATCGGACCGGGGAGAGAGATCAT
GTGCTATGGGGAATAAAGCCAGAAAATAAGACGGTTGGAGGAAGAAAAAAAAAATGATCCATCAGTTCATTTTCGATCCA
ATGGCTCAAAGCTATTATTTTTTGATCGCCGAAACTGAAAAGAGAATCAGTTACCTCACAAAAGGATTGATTATTTCCTT
TTGAAGGCGAGTCGGCCTACAACATCAACA-TAGAAGGTTCCGACTTAAAAGCATCTTCAATAGCTGCCCTACAATAAAG
CACTGAAAAGCAGTTGGAGAGAAATTTAGGGCACAAGAAGTGACTTTTAAGACATTAGAAAATTTTCATCTCCAACATCT
GCCCTGAAATTGATGCCCTAATATACCTCATGTCACTCTT
>chr2D_1
TATACCTTAATACTAGAGAGTTTGCGCATGTGCATATGATACTAAGGGAGAATATCTGGTGCACTGGTGCATCAAACTCG
TGTAGAACATTTTAAAATAATAATTTAAT-TTTTAGCACATTCAGATAATGTTGATGTATGTTCATAAAAATCAAATCAA
AATTTGAAACATAGCTTGGAAAATAAAAAAACAAATTCAACACTAAATTGTATATAGCACAAGTTGGACTTTAGATTTGG
CCCATTATCGGACCGATGTCAAATTTGTCAGTTGTATTCTCGAGCAATGTTTCAAATTTTAATATGAAATTTTGTGACAA
CATATATTAATGTTGTTTCAATGTCCTATAATTTTTTCAGATTTTATCAAACATTTAAATTAGTTGTGACATCCGGTGCA
TCGATGGTATCACAAGGGTGGGGTACTAGACACATTCCCACGATACCCGAGATTGCCACTCGGTTCATCGGCTGATCGGT
ACGCCGCAGTAGCTTAGACCTCCTTTGCTTTACAGGAATTTTAAAGGGAAAAAATTGTAGGAGTTTTTTTTGGAGCCCTT
TGGTACATATAGGAATGGA-TCCTATTCCTATGTAGGATAAGAACCAATCGATCACATTTCAAAAGAAAATATTACCCTA
AATTCAATGAAAAGATCCCTATGCTATGCATCGAATTGCATGTCTTTTCCCATAAAAATTAAGATACGTATCATTTCACC
TCCTATTCTATGAACCAAAAAAAAAAAAGCCTTTGATAGATAAGACATTTTAGATGGCCCGGTCAGCAGCCACCGTTCCG
GACCGGGGACATCATCACCGTTGGCCGTGCGTGGTCGCTGCAGTTGTGCCTATATATGGCTAACAAACCGAGATAAGATG
CGCGTCATCATTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TCATATTTTCCTTTTC
TGCTATCGAACTCGCTTATATAAACCACCACACCAGGCGGAACTTCCTCCACCTCAA----AATAGCTGTTCCACA-CAA
CAGCAGGACCTTAACCAGTTACCCGGCAACTTGTCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCGCTGCGACGTTCC
TGGCACTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTGCACGGTGGC
GAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGTCGGCAAGCCCGTGGGGAGCAACCGCACCCCATAGGTGACGCGGGTGC
A--CCTGCCTCAACTCCCAGGCCTGAAATGTGATGATCGTCCGATCT--TAATAGAATAAAGCTAAGTAAGTGGG--TTA
CTGGGAGCTAAGTGTAGCA-------------------------------------------------------------
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---------------------------------------------------AATACGTACCGAGTGAGTACCTCGTAGAT
GGCCAGAGCAGTGTTGTCGAGAAG---GAAATAAGCCATGGACAACA--ACGGTTGTTCGATATATTTGAATAAAAAATG
TTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACCGCCTAGCCTACAAAAACGTCTTGTA
CTTTGATATGAAGGTAATA---TCAACTACTCGAAAAATGAATGTAGTCGGCTCCAGTAGGGCAGCGGCGACAACAGCGC
GTCAGTGGCTCGTTCTAACACCGGCAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAATTTTTATTATGTTTGAGGTG
CTTTGTACTTTCGGTGAACATTGATAATATATCTGGATCATTTTTCATAAAAAAATGAATTTGAAATAAATTGAGAGAGA
GAGAGAGAGCGCACAGTGCTAGGAAGCCAAGATGAGAGCGGCCCGGATGGGCACGACATTACCGGCAAAGGCGAGGCCGC
GACGTGACCCATGAGGGTCCGATAAGCACCTCACCATATCTGAGAGGTAGGGAAAAAATCGGACCGGGGAGAGAGATCAT
GTGCTATGGCGAATCAAGCCAGAAAATAAGACGGTTGGAGGAAGAAGAAAAAAATGATCCATCTGTTCGTTTCCGATCCA
ATGGCTCAAAGCTATTATTTTTTTATCGCCGAAACTGAAAAGAAAATCTGTT----------------------------
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>chr2B_744
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-----------------------------CCTTTGATAGATAGAAA--TTTAGATAGCCGGGTCAGCAGCCGCCGTTCCG
GACCGGGGACGTCATCACTGTTGGCCGTGCGTGGCCGCGGCAGTTGTGCCTATATATGGCTAACAAACCGAGATAAGATG
CGCGTCATCCTTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TCATAT-TTCCTTTTC
TGCTATCGAACTCGCTTATATAAACCACCACCCCAGGCAGAGCTTCTTCCACCTCAAGTCAAGTAGCTGTGCCACA-CAA
CAGCAGGACCTTAACCAGTTACCCGGTCACCTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCGCTGCGACGTTCC
TGACACTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCCGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCAGACTACTGCGGCGCGGGGTGCCAGTCGGGGCCGTGCACGGTGGT
GAGCAGTGGCGCCGCAGCCGCGGAGACGTCCGGCGGCAAACCCGTGGGGAGCGAGCGCACCCGATAGGTGACACGTATGC
ACGCCTGCCTCAACTCCCAGGGCTGGAATGTGATGATCATCCGATCTTATAATAGAATAAAGCTAAGTAATTGAA--TTA
CTGGGAGCTAAGTAAAGCAAAGCT----TGTAATGG--------------------------------------------
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--------------------------------------------TACGGCTAATACGTACCGAGTGAGTACCTCCTAGAT
GGCCAGAGCAGTATTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTTGATATATTTGAATAAAAAGTG
TTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTGCTACCGCCTAGCCTACAAAAA-GTCTTATA
TTTTGATATGAAGGTAATAATATCAACTATCCAAAAAATGAATGTAGCCGGCTTCAGTATGGC-----------------
----------------AACACCGGTAGTGGTTGTTCGGGGGTCTCAGAATCTCAATGTAACTTTTAGTATGTTTGAGGTG
CTTTGTACTTTCGGTGAACATTGATAATATATCTTGATCATTTTCGTAAAAAGAACGAATTTGATATATAT---------
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>chr2A_762
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-------------------------------------------------TTAGATAGCCCGGTCAGCAGCCACCGTTCCG
GACCGGGGACGTCATCACTGTTGGCCGTGCGTGGCCGCTGCAGTTGTGCCCATGTATGGCTAACAAACCGAGATAAGATA
CGCGTCATCCTTTGCATATGTGTAACGTCCAAGCGTAATCTCATCATCACGCCTGCCCA-----TGATAT-TTCCTTTTC
TGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCGCCACACCAA
CAGCAGAACCTTAACCAGTTACCCGGCCACTTATCAAGCACAGATGGCAAAGCTAGCGATGCCGCTCACTGCGACATTCC
TGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCTGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTGCACGGTGGC
GAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGGGCGCACCCCATAGGTGACGTGGGTGC
A--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGGTCCTCCGATCC--TAATAGAATAAAGCTAAGTAAGTGAA--TTG
CTGGGAGCTAAGTAAAGCAACGCTGCCGTGTAATGGA-------------------------------------------
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--------------------------------------------TATGGCTAATACGTACCGAGTGAGTACCTCGTAGAT
GGCCAGAGCAGTGTTGTTGAGAAG---GAAATAAGCCACGGACAACA--ACGGTTGTTCGATATATTTGAATCAAAAATG
TTTTACCGAATTATCATTTTGCATCCATCATAAATTGCACTTGGTATTTACTACCGCCTAGCCTACAAAAACGTCTTGTA
CTTTGATATGAAGGTAATA---TCAACTACTCTAAAAATGAATGTAGTCGGCTCCAGTAGGACAGCAGCGACAACAGCGC
ATCAGTGGCTCGTTTTAACACTGGCAGTGGTTGTGTTGGGGT-TCAGAATCTCAATGTAATTTTTATTATGTTTGAGGTG
CTTTGTACTTTCGGTGAACATTGATAATATATTTGGATCATTTT-CATCAAAAAATGAATTTGAAATAAATCGAGAGAGA
GATAGATAG-----------------------------------------------------------------------
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>chr2A_764
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---------------------------------------------------AGATAGCCCGGTCAGCAGCCACCGTTCCA
GACCGGGGACGTCATCGCTATTGGCCGTGCGTGGCCGCTGCAGCTGTGCCTAGATATGGCTAACAAACCGAGATAAGGTG
CGCGTCATCATTTTCATATGTGTAACTTCCACACGTAATCT----------------CA-----TCATAT-TTCCTTTTC
TGCTATCGAACTCTCCTATATAAACCACCACCCCAGGCGGAACTTCTCCATC------TCAAATAGCTGCGCCACACCAA
CAGCAGAACCTTAACCAGTTACCCAGCCACTTATCAAGCACTGATGGCAAAGCTAGCGATGCCGCTCACTGCGACATTCC
TGGCCTTCGGGCTGGCAGTGCTCCTCCTGTCCGCCGCTGGTCCGGCGGTCGCGCAGAACTGCAACTGCCCGGCGGGCATG
TGCTGCAGCCAGTGGGGTTACTGCGGCACGGGCCCGGACTACTGCGGCGCCGGGTGCCAGTCGGGCCCGTGCACGGTGGC
GAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGAGCGCACCCCATAGGTGACGTGGGTGC
A--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGGTCCTCCGATCT--TAATAGAATAAAGCTAAGTAAGTGAA--TTG
CTGGGAGCTAAGTATAGCAAAGCTGCCGTGTAATGGA-------------------------------------------
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--------------------------------------------TACGGCTAATACGTACCGAGTGAGTACCTCCTAGAT
GGCCAGAGCAGTGTTGTCGAGGAG---GAAATAAGCCTCGGACAACG--ATGGTTGTTCAATATATTTGAATCAAA--TG
TTTTACCGC--------TTTGCATCCATGGTAAATTGCATTTGGT-----------------------------------
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>chr2B_969
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-----------------ATATAAACCACCACCCCAGGCAGAGCTTCCTCCACCTCAAGTCAAGTAGCTTTGCCACA-CAA
CAGCAGGACCTTAACCAGTTACCCGGCCACTTATCAAGCA---ATGACAAAGCTAGCGATGCCGCTCGTTGCGACGTTCC
TGACACTCGGGCTGGCAGTGCTCCTGCTGTCCGCCGCCGGTCGCGCGGTCGCGCAGAGCTGCGGCTGCCCGGCGCACTTG
TGCTGCAGCCAGTGGGGTTTCTGCAGCACGGGCCCAGACTACTGCGGCGCCGGGTGCCAGTTGGGGCCGTGCACGGTGGC
GAGCAGTGGCGCCGCAGCTGCGGAGGCGTCCGGCGGCAAGCCCGTGGGGAGCGAGCGCACACCATAGGTGACGTGGGTGC
A--CCCGCCTCAACTCCCAGGCCTGAAATGTGATGATCCTCCGATCT--TAATAGAATAAAGCTAAGTAAGTGGGC--TA
CTGGGAGCTAAGTGTAGCAAAGCTGCCGTGTAATGGATACGGCTAACGAAATTGCTCTGCATACGATTTTTCCATTTTTC
CATGTACAATTTGTCCGACCAAGTGATCATACCATTGCCGTTGTTGCATAGATTTGATCGGAGGGTGATTGAGCAGTGTT
CGTACAACGTCGTATAAAATTTGATAGTACGCCTAGCACTGCTCTACGGCTAATACGTACCGAGTGAGTACCTCGTAGAT
GGCCAGAGCAGTGTTGTCGAGAAAAACGAAATAAGCCACGGACAACATAATGGTTGTTCGATATATTTGAATCAAA--TG
TTTTACAGAATAATTGTTTTGGATCCATCATAAATTACACTTGGTATTTACTACCGCCTAGCCTACATAAA---------
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>chr2A_1895
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---------CACGCAGTGCTAGGATGCCAAGGTGAGAGCGGCCCGGATGGGCACGACATTACCGGCAAAGGCGAGTCCGC
GACGTGACCCATGAGGGTCTGATAAGGACCTCACCAGATCTGAGAGGTAGGGGAAAAATCGGAACGGGGAGAGAGATTAT
GTGCCATGGGGAATCAAGCCAGAAAATAAGACGGTTGGAGGAAGAAGAAAAAAAGATCTATT-TGTTCGTTTCCGATCCA
ATGGCTCAAAGCTATTATTTTTTGATCACCGAAACTGAAAAGAAAACCAGTTACCTCACAAAAGGATTGATTATTTCCTT
TTGAAGGCGAGTCGGCCTACAACATCAACACTAGAAGGCTCCGACTTAAAAGCATCTTCAATAGATGCCCTACAATAAAG
CATTGAAAAGTAGTTGGAGAGAAATTTAGGGCACAAGAAGTGACTTTTGAGACATTAGAAATTTTTTATCTCCAACATCT
GCCCTGAAATTGATGCCCTAATATACATCATGTCACTCTT
>SNPs
------------------------------------------------------------------S-S-----------
-------------------S-S-------S--------S-------S----------S------------S---------
--------------------------------------------------S---------------------------S-
-------------SS-----------------------------S-----------------------------------
----------------S---------------------------------------------------------------
-----S-S----------------------S--------------S--------------------------------S-
----S-------------------------------------------S-------S---S-SS----S--S-S------
----SS------S------S-------S----------------------S--------S-------S-------S----
S---S-----------S---------SS----S-----S--S-----S--SS--S------------S--------S---
------S----------S---------S----------------S-----------------------------------
--------S---------------------------SS------------------------------S-----------
-------S-------S-----------------------------------S-SSSS-SSSSSS----------------
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---------S----------------------------------------------------------S-----------
-------------------------------------S------S------------------------------SS---
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---------S--------------------------------------------S-------------------------
-------------------------------------------S------------------------S-------S---
-------S------------------------------------------------------------------S-----
---------------------------------------------S-S--------------------------------
------------------------S-------------------------------------------------------
------------------S----------------------------------S--------------------------
--------------S-------------------------------S----------------S----S---S-------
-------------------------------------------S------------------------------------
--------------------------------------S-------------------------S---------------
--S-------S-------------------------------------S------------S----S-------------
--------------------------S-------------
>forward_940
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----------------------------------------TCATCATCACGTCCAAGCGT--------------------
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>reverse_2214
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-----------------------------------------------------GAAAATCGGACCGGGGAGAG-------
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