>input_sequence_81379
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------------------------------------------------------ATGGAGGATCACTTCGGCCGGAGGAT
ATCCAGGGAGGAGGAGGAGGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGCGGGTGTTCC
TGCGCAGCTACCCTCTACAGTGGGACTCGCCGGCGCCCGGCGGCGGCGTCGACGAGAAGCAGGGCGGGGCGGAGGACGAC
GACGAGGACCGGTACGGCGACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGCGGCGGTGGTGGAGTGGGG
CGAGGACAAGTTGCTGCTGCTCCGGCGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCG
CGCTGCCGTACAAGTACGGCGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGA---------------------
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>chr7A_1_TraesCS7A01G225000
TTCTCCCGCGGGCGCGAGGAAAA-AGGCATGGGTTTGACGTGAAATCCCTTCGCATATCGCGAGGATTGGCCAAAAGCGG
CGAAAGCTCTGGCCGGCCGTGTCACCGCCGGCGGGCTGGCTTTGTGCGGCGGCGCCGCGCGTCATGTGCGTTATCCGGTG
AAAAGCCCCGGCGCTGCAGAGCCACTCCATCCTGGCTTTGGGAAACTTTTGCTTGGCCCGCCTTGCCAAAGTGAAAGCAG
AAAAGGGGCGAATGTGGATCAAATGGCCTAACACTCCGTATTACTTTCTCGTTAAGCTGGCCAAAAGTAATTTGGGAAAG
AGATGCCGGTGAATGAGCCCATTTCACCCTGCTCGGAAAGCCGGAATCTCGCTCGTAGATGCGGATATTGTTATGTGTGG
CTGGCAAGGGGGACCCGCTTGTCCTTGGGGTCATTGCGCCCACTTATTTCGTTACGAGACATCACGCTGGGGCTATGCAT
TGACCATGCTCTGAAGAGATTAGTGATGTGTAAATCTTTAAAATGTGTTTGTGCTTCAGCATAGCCTTTGGCGGT-AGAA
AGAGCTTCTATTCCATTTTACTAGTAAGTACCCCGTAGTTGAGAAAAGGCAGCCCGATCTATTGCAAGAATCTCAACTTA
GCACAAAACTGAATAGCATTTGTTTAGGAGCAGAAAA-TGGTCAAGTAAAGTCGCCCGTCCGAGTGGTTGCCATCAGATT
ACCGGCAAAGGAAATCCTTGGCCCGGAAAGCATTGAAAAACACCTCCGTGCCAGGCACATCAAACCGCGCGAATTATTAT
TAATTAATTAAACCATCTCGCCCACACGGCCCACG------CACGACAAAAGAGAAAGGGGGTAAAAAAATGAAGGAAAG
CCGACGTGGCCGCCCGCCGCTTAACCGCCCATATAAGCGCAGCATCGGCCGCATTGTGGGCTCAGCC-AGCGAGCGGCGC
AGCAAGCCAAGCAGCCA----AAGCCAACGATCATCGCCTCGTCGTCGTCGGCAATGGAGGATCACTTCGGCCGGAGGAT
ATCCAGGGAGGAGGAGGAGGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGCGGGTGTTCC
TGCGCAGCTACCCTCTACAGTGGGACTCGCCGGCGCCCGGCGGCGGCGTCGACGAGAAGCAGGGCGGGGCGGAGGACGAC
GACGAGGACCGGTACGGCGACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGCGGCGGTGGTGGAGTGGGG
CGAGGACAAGTTGCTGCTGCTCCGGCGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCG
CGCTGCCGTACAAGTACGGCGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGCCCGCCGCCATGGCGAGC
TGGCTCAGCTGCTCGTGT--TTGTCCATGATACGCGGCAGACAGTTGTTAGTCTGCTCGTGCCATTAGCCTTTCCCTGCT
GCTCTGTTTTGTGCGCCTGAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGA
TGAAACGCTCATGTATATAC-GTATTTTCTTGTGAATTTTTTGGCATATGGTAGATGGACAGATCATACTGATTATTGTT
CCAGGAATTTGTCAGAGAAAAGGAACCTCCAATACATACATAGCTTTTCATGCTTACAGGAACCTTCAATACATAGCTTT
TTGAGTATGTTTATTACAGGAACCTTCAAAATACATAGCTTGCG--------------AGATAGTATGTGTTTTTCTTGG
GATAAGAAGATGATCCTGAGTAAATTGTGCCAAGCTGTTTCACAGG--TTATTTTTTTATACGTAGAGCTGCTGTTGTGC
ATTCCA-------GATTAGCTCAACAGACAAGG-AAAAGGATACAGAAAGACCTCA----------------TCATTGTA
TAACAACATAAACACTAAAGAAACACTCACATATACAGATATCATCGCTAAAATGGACTAGAGGAGAAGTCGGTATCTGT
GCAGATTAAAATTT------------------------------------------------------------------
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---------------------------------------------------GGAAACGATTGCTTCTGGTACTGA-----
---ACCAACGGTTGAACAAATTCACCAAACAGAAATCACTGTTTCGTCAACTGAAAACAATTATCGGCTCATGTGCTGAC
AACTTCATAGTGCTAGTATATCCTTATCTTGATTTGACTCGACCTTTATCGCCCTCGATTGGCTGGTCCTAATAGTGACT
GAAAAGAAAGAACAGTATTCTCAAAAAAAGGGAAGAA-----AAGAGATAGAACAGTGGCCTAATTATTGGTGCCAATAA
GCCGCCAGAATAGCTATCTTCATGTGAGTGTCATAATAAAATAAAATCTAAGTTCTGAGCACCCAGAGACTTTACCAGTT
---------TTCCTAATCTGGATCTTGCAGGCACGAGATCG
>chr7B_1
TTCTCCCGCGGGCGCGAGAAAAA-AGGCA-GGATTTGACGTGAAATCTCTTCACATATCGCGAGGATTGGCCAAAAGCGG
CGAAAACTCTGGCCGGCCGTGTCACCGCCGGC----TGGCTTTGTG--GCCGCGCCGCGCGTCATGTGCGTTATCCGGTG
AAAAGCCCCGGCGCTGCAGAGCCACTCCATCCTGGCTTTGCAAAACTTTTCC-TGGCCCGCCTTGCCAAAGTGAAAGCAG
AAAAGGA--GAATGTGGATC-AATGGCCTAACACTC--TATTACTTTCTCGTTAAGCTGGCCAAAAGTAATTTGGGAAAG
AGATGGCGGTGAATGAACCCATTTCGTCCTGCTCGGAAC--------CTCGCTCCTAGAAGCGGGCATTGTTATGTGTAG
CTGACACCAGGGCCCGCTCGTTA---------------------------------------------------------
-----------TGATGAGATTAGCGATGCG-AAATCTTTAAAATGTGTTTGTGCTTTAGCATAGCCTTTGGCCGTAAGAA
AGAGCTTTTGCTTGATTTTACTAGTTGAG-------------GAAAACGCATATGGATCTCTTGCAAGAATCTCAGCGAA
GCACAGAATTGAATAGCATTTGTTTAGGAGCAGAAAAATGGTCAAGTAAAGTCGTCCGTCCGAGTGGTTGCCATCAGATT
ACCGGCAAAGGAAATCCTTCGCCCAGAAAGCATTGAAAAACACCTCCGTGCCAGGCCCATCAAACCACCCGAATTGTT--
----------AACCCGCTCGCCCACACGGGCCACGGTCACGCACGACAAGAGAAAGGCGGAGAAGAAAAATAAGAGAAAG
ACGACGTTGGCGCCCGCCGCTTAACCGCCCATATAAACCCTGCGTCGACCGCATTGTGGGCTCAGCCAAGCGAGCGGCGT
AGCAAGCCAAGCCAAGTAGCCAAGCAAACGATCGCCGCCAA------------AATGGAGGATCACTTCGGCCGGAGGAT
ATCCAGGGAGGAG---GAGGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGAGGGTGTTCC
TGCGCAGCTACCCTCTGCAGTGGGACTCGCCGGCGCCCGGCGGCGGCGACGA---GAAGAAGGGCGAGGTGGAGGACGAC
GACGAGGAGCGGTAC---GACGGCGCCGGCCGCGACAGGAGGTGGAAGCGGCAGGTGGTGGTGGCGGTGGTGGAGTGGGG
GGAGGACAAGCTGCTGCTGCTCAGGCGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCG
CGCTGCCGTACAAGTC---CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGAT----CGCCGCCGTGGCGAGC
CGGTTCAGCTGCTCGTGTGTCTGTCCATGATACGCAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCTGCC-TTCCATGCT
GCTCTGTTTTGTGCGCCTGAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGA
TGAAACGCTCATGTATATA-----TTTTCTTGTGAAATCTTTGTCATATGATAGATGGACAGATCAT---------TGTT
C-------------------------------------------------------CAGGAACCTTCAATACATAGCTTT
TTGAGTATGTTTA---CAGGAACCTTCAAAATACATAGCGAGA---------------------TATGTGTATTTCTTGG
GATGAGAAGATGACCCTGAGTAAATTGTACTACAGTATTTCACAGTTTTTGTTTTTTGGTATGTAGAACTGCTGTTGTGA
TTTCCA-------AATTAGCTCAACAGACAAGTAAAAAAGATACATAAGACTTTTGACTGGAACTCCGCTGCTCATCGTA
TAACAACACATATAGAGTAC---------------CAGATGTCATCACTAAGATACACTAGAAGAGAAGTCGGTATCCGT
GCAAATTAAAATTT------------------------------------------------------------------
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---------------------------------------------------GGAAACGATTGCTTCTGGTTCTGAACCAA
GTAACCAACGGTTGAACAAATTCACCAAACCGAAATCACTGTTTCGCCGACTGAAAACAAAGACGGGCTCATGCGCTGAC
AACTTCATAGTGCTAGTATATCCTTATCTTGATTTGACTCAACCTTTATGGCCCTCGATTGGCTGGACCTAATGGTGATT
GAAAAGAAAGAACAGTGTTCTAAAAAAAGGGGAAAAGAAAAGAAAAGAAAGAACGGTGGTCTAATTATTGGTGCCAATAA
GCCGCCAGAATAGCTATCTTCATGTGATTGGCATACAAAAATTG----TAAGTTCTGAGCACCCAGAGACTTTACCAGCA
TCTATCGCCTTCCTAATCTGCATCTTGCAGGCGTGAGAT--
>chr7D_6
-----CCGCGGGCGCGAGAAAAAGAGGCA-GGGTTTGACGTGAAATCTCTTCACATATCGCGAGGATTGGCCAAAAGCGG
CGAAAACTCTGGCCGGCCGTGTCACCGCCGGC----TGGCTTTGTGTGGCCGCGCCGCGCGTCATGTGCGTTATCCGGTG
AAAAGCCCCGGCGCTGCACAGCCACTCCATCCTGGCTTTGGGAAACTTTCGCC-GGCCCGCCTTGCCAAAGTGAAAGCAG
AAAAGGGGCGAACGTGGATCAAATGGCCTAACACTCCGTATTACTTTCTGGTTAAGCTGGCCAAAAGTAATTTGGGAAAG
AGATGCCGGTGAATGAACCCATTTCGTCCTGCTCGGAA--------TCTCGCTAGTAGATGCAGACATTGTTATGTGTTT
CTGACAA-GGGGGGCCGCTCCTCCTTGGGGGGCGTTAGGCCCACTTACCAGG----------------------------
------------GAGGTGATTGGCGATGCG-AAAATTTTAAAATGTGTT-GTGCTTGAGCATAACTTTTGGCGGTAAGAG
AGAGCTTGTGTTTGATCTTACTAG--------------TTGCGGAAAAGCAGCTCGATCTACTGCAAGAATCTGAACGAA
GCACAAAACTGAATAGCATTTGTTTAGAAGCAGAAAAATGGTCAAGTAAAGTCGCCCGTCCGAGTGGTTGCCATCAGATT
ACCGGCAAAGGAAATCCTTCGCCCGGAAAGCATTGAAAAACACCTCCGTGCCAGGCCCATCAAACCGCGCGAATTATTAT
TAATTAATTAAACCATCTCGCCCACACGGCCCACG------CACGACGAAAGAGAAAGGGAGTAGAAAATGAA-AGAAAG
CCGATGTGGCCGCCCGCCGCTTAACCGCCCATATAAGCACAGCATCGACCGCATTGTGGGTTCAGCC-AGCGAGCGGCGC
AGCAAGCCAA------------AGCCAACGATCGCCGCCAA------------AATGGAGGATCACTTCGGCCGGAAGAT
ATCCAGGGAGGAG---GAGGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGAGGGTGTTCC
TGCGCAGCTACCCCCTGCAGTGGGAATCGCCGGCGCCCGGCGGCGGCGACGA---GAAGCAGGGCGAGGCGGAGGACGAC
GA---GGACCGGTAC---GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGTGGCGGTGGTGGAGTGGGG
GGAGGACAAGCTGCTGCTGCTCCGCAGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCG
CGCTGCCGTACAAGTC---CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGC----TGCCATGGCGAGC
TGGTTCAGCTGCTCGTGT--CTGTCCATGACACGCAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCAGCCTTTCCCTGCT
GCTCTGTTTTGTGCGCCTGTAATACGCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGCACGAGTGA
TGAAACGCTCATGTATATACAGTATTTTCTTGTGAAATTTTTGTCATATGATAGATGGACAGATCATACTGATTACTGTT
C-------------------------------------------------------CAGGAACCTTCAATACATAGCTTT
TTGAGTATGTTTA---CAGTAACCTTCAA--TACATAGCTTGCACTGAAAGACTAGCTAGATAGTATATGTATTTCTTGC
GATAAGAAGATGGGCCTGAGTAAATTGTGCCAAGCTATTTCACAGG--TTATTTTTTTATACGTAGAGCTGCTGTTGTGC
ATTCCAGAATCCAGATTAGCTCAACAGACAAGGAAAA-GGATACAGAAAGACTTCA----------------TCATGGTA
TAACAACATAAACACTAAAGAAACACTCACATGTACAGATATCATCACTATAATACACTGGAGGAGAAGTCGGTATCTGT
GCAGCTGCGTTTGGCTGCTCAGTATTTTTGAAGTTTCAGGAGAATACCATGGTTTTTGTAGAAACCTCAGTTTTAAATAC
TTTGACGTGTTTGGCTTCGACAAATACTTTAGTTTTACAAACGTGGTATATCTAAAACCATGGTATTTTGCTGTATCTAA
AAAAGAGGTCTCAACCTCTTTTTTGTAAACTGAGAAACACTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATAA
TTCCTCCATCTCTTCTGCAGCCAGAAAATCAAGATTACCACATGGGAAACTTCACTACTCTGCTTCAATCGTTGACTATT
GTTCTAGTGCAACAGGAAGCAGCGCGTACATTAGCTAGTACTAGACGTTCGGTCCTATCAGATGGTGTGTGTACAGATAC
AAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCAATTGATACTTGGAGTAAACTTATACACAGCAGGCTAAGCTAG
CTAGCCGATTGATTCCATGTGGCCAGAGAAACAAGATTACTCAACAACATATCCTAGCATCTAAAGGATGTTCGCGTGCA
TGACAAGGCTATAGGCATGCGGCGGCCATTAATTAGCATAAGCTGATCAGGTCATTGTATAACTCCTTTGATGTAGCACA
ATTTGGTTCAGCTAGCTATATCTAGGATTATCCCCGCAACGAGTGGTCAAAACCGAGAAACTAAGAAAAACTGCACTTGC
CAGACATCTCTATAGTTTTGCTAAAACTGAGAAAAACTGTAGTTTTTAGAAACCGAAGTATTCATTGCCTACACATTGGA
ACACCGTGGTTTCCAGATACCATGGTTTTGAAAAAACCGTGTTGCCAAACCGGGAACGATTGCTTCTGGCACTGA-----
---ACCAACGGTTGAACAAATTCACCAAACAGAAATCACTGTTTCGTCAACTGAAAACAAAGATCGGCTCATGTGCTGAC
AACTTCATAGTGCTAGTATATCCTTATCTTGATTTGACTCAACCTTTATGGCCCTCGATTGGCTGGTCCTAATAGTGATT
GAAAAGAAAGAACAGTATTCTCAAAAGAAAGG----GAAAAGAAAAGAAAGAACAGTGGCCTAATTATTGGTGGCAATAA
GCCGCCAGAATAGTTACCTCCCTGTGATTGGCATACAAAAATTG----TAAGTTCTGAGCACCCAGAGACTTTACCAGCA
TCTGTCGACTTCATAATCTGGATCTTACAGGCGCGAGATCG
>chr4B_1111
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----CAGCTACCCTCTGCAGTGGGACTCGCCGGCGCCCGGCGGCGGCGGCGA---GAAGCAGGGCGAGGCGGAGGACGAC
GACGAGGAGCGGTAC---GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGTGGCCGTGGTGGAGTGGGG
GGAGGACAAGCTGCTGCTGCTCAGGCGGGTCAAGAAGCGGCTGGCGCTTTACCTCATCGGCTGCCACTACAGCCGCCCCG
CGCTGCCGTACAAGTC---CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGAGCGC----CGCCATGGCGAGC
TGGCTCAGCTGCTCGATCG--TGTCCATGATACACAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCTGCC-TTCCATGCT
GCTCTGTTTTGTGCGCCTGAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGA
TGAAACACTCATGTATATA-----TTGTCTTGTGAAATCTTTGTCATATGATAGATGGACAGATCAT---------TGTT
C-------------------------------------------------------CAGGAACCTTCAATACATAGCTTT
TTGAGTA---------CAGGAACCTTCAAAATACATAGCGAGA---------------------TATGTGTATTTCTTGG
GATAAGAAGATGACCCTGAGTAAATTGTACTACAGTATTTCACAGTTTTTGTTTTTTGGTACGTAGAACTGCTGTTGTGA
TTTCCA-------AATTAGCTCAACAGACAGGTAAAAAAGATAAATAAAGAC----------------------------
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>SNPs
------------------S----------S-----------------S----S---------------------------
-----S--------------------------SSSS----------S---S-----------------------------
----------------------------------------------------S---------------------------
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----------------S--------SS-----------SSSSSSSS-------------------S------------S-
---S---S----S------SS---------SSSS-SS-S--SSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---S--------S----S-S-------------------------S-----------------------
-------S-S--SS-----------SSSSSSSSSSSSS---S-----S-----S-----------------------SS-
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-------------------S------------------------------------S-----------------------
------------------------------------------------------------S---S------S-SS-----
--------------------------------------S--------S--------------------------------
------------SSSSS----------------SS----SSSSSSSSSSSSSS---------------------------
-------------SSS------------------------------------------------------S---------
----------------S-------------------------------S---SSS-----------S-------------
---------------SSS-------------------------------------------S------------------
S---------S---------------------------------------------------------------------
---------------SSSS--------------------------------------------S----------------
--------------------S--------------S---------------------------S-S--------------
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------------------------------------S------S------S------------------------S----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
-------------SSS---------------------------S---------------------------S--------
-------------S----------------------S-------------------------------------------
----------------------------------------------------S-----------------------S---
--------------------------------S-------------S-------SS------------------------
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------------------------------------------------------------SS------------------
----------------------------------------S--------S----------------------------S-
----------------------------------S-S-------S---S-------------------------------
---------------------------S--S----SS-----SSSSSS------------------------------SS
--------------------------------S--------
>forward_486
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------------------------------------------------------------------CTGGGGCTATGCAT
TGACCA--------------------------------------------------------------------------
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>reverse_1504
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---------------------------------------------------------------ATTAGCCTTTCCCTGCT
GCT-----------------------------------------------------------------------------
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