>input_sequence_81353
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-------------------------------------ATGGATCATCTGCTGCACCACGGGCACGAGATGAGGAGGCCGT
CCGTGC------CCGGCCATGAGGCGGCGCTGAGGGCCGTCCAGAAGCCGCCGGCCAAGCCGTGGCGCGCGGGCGGCGGC
TTGACCCCGGCGCCGACGCCGCCCAAGGTGTACCGCGTGGAGCCCCGGGAGTTCCGCGACCTCGTGCAGAGGCTCACCGG
CGCGCCCGCCGCGGCCATGGCCAGGCCGCACCAGCACGGCCAGCACCAGCAGCTGCAGCGCGCGCCGACGCAGCCCGTGC
CCGTGCGCCCCGGAGGTGTTGAGGACGCCGCCGCCGCG---GGGCAGATGTACGCGCCCTGGTGCTCGTTCCCGCTCATG
GGCACGCCGGCGTCCATGCACCCCGGCCTCGACGGCCACCACCTCATGTAG-----------------------------
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>chr3B_1_TraesCS3B01G478300
CTATCTATTGTGTAAAAACTTTGTGTATGTATGAACTATGTATGGTGATCTCAATTACGATGAACTCGTTCTGTTTGTCC
CGCAAAAGCCTTGAATTTAAAATTTACAGTTTCGTTTGAGGTTTCTGTTCTTTCATGGAGTTTTTCGGTCCGTATCCGAG
ACAACGAGCGAACCATAAACTGAGTGTACAGGTCCGTGCTTTGTGGGGTCTGCTAGAGATGCTCTAAGTCGGTTGAGATT
TAGCAAGACTGTGTATGTTCATGTAACTTATGTGGAGCCTCGCTTCTCATCAAGGGATACACAAAAATTGTGGGTGAATG
AACAGGCTAAGATTATATGGCGATCCATACGTACGTACGTGTCAGCCGTGGCTGCAGATACGTAGGTGTA---TTTTAGA
TAGGAACAAGAAGTTGAAGAGATGGATCGATCTAGAGGAGGATGGTGATGCAC-CAC--GCCGGATAAGCCA--GGCGGC
CAGCCAGCCAGCCGTCGATGCCACCAACCTCGGCATCGTAGGTCGGTAGCGTCGGTCCAAACTAGCAAGGCGCAGGTGTT
GCGCCCCCGCCGATGCCTCCAACAAGCAGCTGACGCAGAGGCCCGCAAGTCACAATAAAATAATAC------TACTCTGC
C----GAGAGATATTTGCATGGCATGCATGGCTCAT-GGCCGGCCGATGGCTGCATGGCAGGCGGGCGCCGCGATTGACC
GCCCGTCTCCATCCACGTGTTGCGTCGCCGGCGCCGC--------------------------CTCCCGCTTGCTTCAGC
TCCCATCCTTTCTAGAAGCCTCTCACGGTCTCACCCC-ACCCCGTCGCGCACGCCCACTAGCCCGCGCGGTCGCCCGCTA
TATATACCTTGCCTTCCCCGGGTCTCATCTCCATGCTCCATATAC-------------TCTCCCCTGCTCTCCCCTGCTT
CTGCTTCTTCTTCTTCTTCCTGTCGATCACTGTACCTGCACTGCAAGAGACTTCTTTACCGATCG----TTCAAGCAAGC
GCCGAGGTTCGATTTGAT--------------CGTCAATGGATCATCTGCTGCACCACGGGCACGAGATGAGGAGGCCGT
CCGTGC------CCGGCCATGAGGCGGCGCTGAGGGCCGTCCAGAAGCCGCCGGCCAAGCCGTGGCGCGCGGGCGGCGGC
TTGACCCCGGCGCCGACGCCGCCCAAGGTGTACCGCGTGGAGCCCCGGGAGTTCCGCGACCTCGTGCAGAGGCTCACCGG
CGCGCCCGCCGCGGCCATGGCCAGGCCGCACCAGCACGGCCAGCACCAGCAGCTGCAGCGCGCGCCGACGCAGCCCGTGC
CCGTGCGCCCCGGAGGTGTTGAGGACGCCGCCGCCGCG---GGGCAGATGTACGCGCCCTGGTGCTCGTTCCCGCTCATG
GGCACGCCGGCGTCCATGCACCCCGGCCTCGACGGCCACCACCTCATGTAGCTCCG------CCTCCGGCATGCCGCCGC
TCTTGTATGTACATCCTTGTTTTCTAGGACTAGGACAAGCAAGCTAGGCGCGTAAACTTCAAGGGAGCGAGTAAAAACTT
CTTAATTAATA--TCCAGTTAGTTCTAAGTTC---------------------------------TTAGCAAACATAATA
CTCCCTGTTAAAAAAAGACAAATATAACACTCGTTGCTCCCTTTGTAATATTATTATTAGCTGCAGCACAAGATGTAATT
ACCAAGGATGAAGAGACAGTATGTTTGCGATGAACAAACTCACTGACGGTTAATCATTTTTTTTATCTGGCAATCACGGG
GAAAGCTTCCCCACGGGAATACCAAGGACTACCTCTACGTCAGGTGAATGGAAAAAAAATTGCATCACTCACTTTCATTC
TGGGTCATTAGATTTTCATTAAGTTAACAGATCGAACACTGTTCAGCTTCAGCCTCCCAACTTTTCTTCCTTGCGTAGCC
GCCGGCCAACCCAACCCTAATCGTATGCCTGCCCCCGCACCCTGCGGCTATCATCGCCCCGCCCTCGCATCGAACTGCCC
CATTGATGTGCTGGTCGCCGCCCCAACCATCCCTCTAAGCTTGCGCCGCGTGTGAACTACTCCGACGGCCCCTTGCATCC
TCCCATCCTCTTGCATCCTTCCATCCTAAGATAGATAATGTGACTGCTGCTACCCTAAGATAGATAATGACCGCTGCTTC
CCCTTAAGATAGATAGTGAGGTTGCTTCTTCTCCAGCGAGGTCTCTCATTCTCCGGTGAGGTCCGGCCTCCAAAATTAAA
AGACTGGCACAAGAATACTATTTTAGGTACCTGAAAAATAGCAAAACTGTGAATATTATCGTTACCGAAAACGCAAGGAT
TATAGGGGTGTGGTTATTAACTGCGAGGATAGATGGTCACGCCAAGGCATAGCATGTGCCTTACTATCGTCTCCTTAAAC
CGATAGTTCGAGATAGTTGGGTGATGTGAAGGCGCTTATTACTCCTGGATCG
>chr5B_220
TGCTCGT-------------------------------------------------------------------------
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----------------------------------------------------------------TAAATCGGCTGAGATT
TAGCAACACCGTGTACATTCATGTAATTTATGTGGAGCCTTGATTCTCATGGAGGGATATGTACAT-TTGTGGGTGGATG
AAGAGGTTAACATTATATGGTGATTCGTACGTACGTACGTGTCAGCCGTGGCTGCAGATACGTAGGCGTA---ATTCAGA
TAGGAACAAGAAGTTGAAGAGATGGATCGATCTAGAGGAGGATGGTGATGCACGCAC--GCCGGATAAGCCA--GGCGGC
CAGCCAGCCAGCCGTCGATGGCACCAACCTCGGCA---------------------------------------------
------CCGCCGATGCCTCCAACAAGCAGCTCACGCTGAGCTCCGCAAGTCACGAAAACTCTACAAT-AAAATACTCTGC
C----GGGAGATACTCGCATGGCATGCATGGCTGTCCGGTCGGCCGATCGCTGCATGGCAGGCGGG-------------C
GCCCGTCCCCATCCACGTGTTGCGTCGCCGGCGCCGCCACGCC-GGCCACGCGGGCAGTCCGCCTCCCGCTTGCTTCC--
-----------------GCCTCTCACGGTCTCACCCCCT------------------CGCGCACGCGCGGACGCCCGCTA
TATATACCTCCCATGCCCCCGCCCTCATCTCCATGCTCCATATAC-------------TCT-----GCTCTCCTCTGCTT
CTGCTTCTTCTTCCTGCCGCTCGCTGCGCA-----------TGCAACAGACTTCTTGACCGATCATTCATTCAAGCAAGC
GCCGAGGATCGACCGA---GCACGAGCAGGGACGTCGATGGATCATCTGCTGCACCATGGGCACGAGATGAGGAGGCCGT
CCGTGACCGTCTCCGGCCACGAGGCGGCGCTGAGGGCCGTCCAGAAGCCGCCGGCCAAGCCGTGGCGCGCGGGCGGCGGC
TTGACGCCGGCGCCGACGCCGCCCAAGGTGTACCGCGTGGAGCCCCGGGAGTTCCGCGACCTCGTGCAGAGGCTCACCGG
CGCGCCCGCCGCGGCCATGGCCAGGCAGCACCAGCACGGCCAGCAGCAGCTGCTGCCGCGCGCGCCGACGCAGCCCGTGC
CCGTGCGCCCCGGCGGTGTCGAGGACGGCCCGGCCGCGGCCGGGCAGATGTACGTGCCCTGGTGCTCGTTCCCGCTCATG
GGCCCGGCGGCGTGCATGCACCCCGGCCTCGACGGCCACCACCTAATATAGGACACAGCTCATCCTCCCG--GCCGCTGC
TCTTGCATGTACATCCTTGCTTTCTAGGACAG----------GCTAGGCGCGTGAACTGCAAAGCAGCGAGTAAAAACTC
GT---TTAATA--TTGCCTTAGTTTTAAGT--------------------------------------------------
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>chr5D_318
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-----------------------------------------------------------------------------ATG
AACAGGCTAAGATTATATGGTGATCCGTACGTACGTACGTGTCAGCTGTGGCTGCAGAGACGTAGGAGTACTATTTTAGA
TAGGAACAAGAAGTTATAGAGATGGATCGATCTAGAGGATGGTGGTGATGCA-GCAC--GCCGGATAAGCCA--GGCGGC
CAGCCAGCCAGCCGTCGATGGCACCAACCTCGGCACCGTAGGTCGGTAGCGTCGGTCCAAACTAGGAAGGCGCAGCTGTT
GCGCCCTCGCCGATGCGTCCAACAAGCAGCTGACGCAGAAATCTGCAAGTCACAAAAATTCCACAAT-AAAAAACTCCGC
C----GAGAGATATTTGCATGGCATGGCTGGCTGGCCGGCCGGCCGATCGCTGCATGGCAGGCGGGCGCCGCGATTGACC
GCCCGTCCCCATCCACGTGTTGCGTCGCCGGCGCCGCCAC-CC-AGCCACGCGGGCACCCCGCTTCCGGCTTGCTTCCAC
CGTCTTCTCTTCTAGAAGCCTCTCACGGTCTCAGCCCCT------------------CGCGCACGCGCGGACGCCCGCTA
TATATACCTCCCCTGCCCCCGCCCTCGTCTCCATGCTCCATATAC-------------TCT-----GCCTTGCTCTGCTT
CCGCTTCTTCTTCCTGTCGCTGCAAGTGTAAG-------------------TTCTTGACCGATCG----TTCAAGCGCCC
AC---GGTTCGACTTGGTCGGCCGAGCACGTACGTCGATGGACCATCTGCTGCACCATGGGCACGAGATGAGGAGGCCGT
CCGTGC------CCGGCCACGAGGCGGCGCTGAGGGCCGTCCAGAAGCCGCCGGCCAAGCCGTGGCGCGCGGGCGGCGGC
TTAACGCCGGCGCCGACGCCGCCCAAGGTGTACCGCGTGGAGCCCCGGGAGTTCCGCGACCTCGTGCAGAGGCTCACCGG
CGCGCCCGCCGCGGCCATGGCCAGGCAGCACCAGCACACACAT------CAGCTGCAGCGCGCGCCGACGCAGCCCGTGC
CCGTGCGCCCCGGCGGTGTCGAGGACGCCGCCGCCGGG---GGGCAGATGTACGCGCCCTGGTGCTCGTTCCCGCTCATG
GGCCCGCCGGCATCCATGCACCCCGGCCTCGACGGCCACCATCTCATGTAGAGTAGCTCCGCCCTCCGGCATGCCGCCGC
TCTTGTATGTACATCCTTGTTTTCTAGGACAAGCA-----AAGCTAGGCGCGTAAACTTCAAGGGAGCGAGTAAAAAACT
TTTTAATATCCAGTCCAGTTAGTTCTAAGTTCTTAGCAAACTCTTTTCCAGAAACAAAAATGTTGTTAGCAAACATAATA
CTCCCTGTTAAAAAAAAGCAAATATAATACTCGTTGCTCCCTTTGTAATATTGTTAGCACCT---GCACAAGATGTAATT
ACCAAGGTTGAAGCGACAGTATGTTTGCGATGAACAAACTCACTAACGGTTAATCATCTTTTTTATTTGGCAAT------
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>chr5A_397
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-------------------------------------------------------------------------------A
TAGGAACAAGAAGGTTAAGAAATGGATCGATCTAGACGACGATGACGCACGTAGGACGGGCCGGATAAGCCAAGGGCGGC
CAGCCAGCCAGCCGTCGATGGCAGCAACCCTGG-ATCGTAGGTCGGCGACGTCGATCCAAGCTAGGAAGGTGCAGGTGTT
GCCACCCCGCCGATGCATCCAACAAGCAGCTGACGCAGA---CCCCAAGTCTCAAACAAATATATTCAAATAAACTCCAC
CGATAGATAGATATTTGCATTGCATGCATGGCTGGCTGGCCGCTGCTCG--TGAATGGCAGGCGGGCGACGCGACTGACC
GCCCGTCCCCATCCACGTGCTGCGTCGCCGGAGCCGCCAC-CCCGGCCACGCGGGCACCCCGCCTCCCGCTTGCTTCGGC
CATCTTCTCTTCTAGAAGCCTCTCACGGTCTCACCCCCACCCCGTCGCGCACTCCCGCGCCCACGCGCGGACGACCGCTA
TATATACCTCCCACGCCTCCCCCCTCATCTCCATGCTCCATAGTCTGCCCCGCTCTGTTCT-----CCTCTCCTCTGC-T
CTGCTTCTTCTTCCTGCAAGAGA------------------------------CTTGACCGATCG----TTCAAGCAAGC
GCCGAGGTTCGACTTGATCGCCCGAGCAGGGACGCCAATGGACCATCTGCTGCACCACGGGCACGAGATGAGGAGGCCGT
CCGTGC------CCGGCCACGAGGCGGCGCTGAGGTCCGTCCAGAAGCCGCCGGCCAAGCCGTGGCGCGCGGGCGGCGGC
TTGACGCCGGCGCCGACGCCGCCCAAGGTGTACCGCGTGGAGCCCCGGGAGTTCCGCGACCTCGTGCAGAGGCTCACCGG
CGCGCCCGCCGCGGCCATAGCCAGGCAGCACCAGCACGGCC------AGCAGCTGCAGCGCGCGCCGACGCAGCCCGTGC
CCGTGCGCCCCGGCGGTGTCGAGGACGCCGCCATGGCC---GGGCAGATGTACGCGCCGTGGTGCTCGTTCCCGCTCATG
GGCCCGCCGGCGTCCATGCACCCCGGCCTCGACGGCCACCATCTCATATAG-----------------------------
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>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S-------
------S--S-----SS---------S-------------S-S-------SS-------SSS-S-SS---------S---
--------------------S-----S---------------------------------------S-------------
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--------------------S--------------------------------------------S--------------
----------------------------------------SS-------------S-------S-S--------------
---------------------------------SSS--------------------------------------------
-------S---------------------------------------------------------------------S--
SSS-S--SS-------------------------------------------S---S-SS--S-------S---------
---------SS---S----S-SS--------------------------------------SSSSS-------S------
-------------S-S-SS---S-SS-SSSS-SSSSSSSSS-----S---------S-----------------------
------------S-------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------S------------------S----------------------------------
-------------S-----S------------------------------------------------------------
---S-----------------------------------------------SS-S-------------------------
------------------------------S--S-SSSSS----------------------------------------
S--S----------------------------------------------------------------------------
----------------SS---------S------------------------S---SS-S--SSS---------------
-------S-----S------------------------------S------------S--------S-------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_223
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-------------------------------------------TGGGGTCTGCTAGAGATGCT-----------------
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>reverse_2276
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-----------------------------------GCGAGGTCTCTCATTCTCCG-------------------------
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