>input_sequence_81347
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-------------------------------------------------------ATGCAGTACGGCGCGGCGGCCGAGC
AGGCGTGGTACATGCCGGCGATACCGGTCGCCTTGGCGGCGGAGACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAG
AGCGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCA
CCCCACCTTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCG
GCCCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCC
GCGCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGA--------------------
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>chr2D_1_TraesCS2D01G284300
CACGTAGGCCAGCAAAATGAGCCAGCTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAACTGATCGCCT
CCATCGCTAGCCGCATTAGATGTAAA-TCAACATTTTCAATAGTCATCCGGATGCCTAGGAATATAATCACTCAACTGTC
AACTTATTAAGCTTATTTTGGTTTTTTT--AGAAACTATTAAGCTTATTTCCAGTCCGCTGCCCTTTCATCATGCGCAAA
AATTATTTTACCTTTATGTTCAAATCAAAACATGACGTAGTTTTCCCTAAAGAAAAGGACACATCACCTAGTTTTATTAG
TACAATATTTCTAGGGTGCGACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACAAGTATTACGGAA
AAATAGAACAAATGCAAATATAGTATTTTGATTAATAGACACAATATTTAATAAATTAGTAGTCAACACCGATAAGTTTG
ACTGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAG----GCT
TGACTTTGTACCATTGCTGTGGCCTCTTTAAACAGAACATATACGGTTTAACTTCGAGATGCTGAAACAATCAAGA--TA
TATGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAA--GTT
GCATGCGTCTCGTGAGATCGTCTAGTATCGAAAACCTGCATGTACATCCTGGAAAAGAAAAAGGC----ATTCCTTCTCC
TTTCCGTGAAGACGCACCACCCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCAGCTCTATATATACATGCGC
CTCTTCTCACTTGTAGCTCGCCAGCCCTAAAACAGCTCACGCTAGCTCTCTCAAACCACCTCCCGCGCTTAGCTACTTAA
TAAGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCGGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGC
AGGCGTGGTACATGCCGGCGATACCGGTCGCCTTGGCGGCGGAGACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAG
AGCGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCA
CCCCACCTTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCG
GCCCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCC
GCGCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCACCACATTGTCAGTG
ACACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGC
GTGTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTG--TTTTTTTTACCACTACTGCCTCCGTCTTGTTTGAGCTTGTGGGA
GCTAGTGCGTGCATGCTTGCACTACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGA
TCTAGTGTTCATCTCCCTTTAATTAGTTATTTGGCTTGCCTTGTTTAAAACTTCTGTTAGTTGTGTGTTCATCCTTTGAC
ATTTTTGTCTTGTGTGTTCTTTCGTGGTTAGTGGTCAGATGCTGTCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGT
TGCTATATGATAAGAGAAATTCTTATATATTATATGCACATAGAGAGACCGGGATACAACTCCTTTTCTTTGAAAAGATA
AAGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAGTTATACAAACTTGATTTTGTAGAG
ACAAGTGGGCAACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATG
CTCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGCCATCTTTATGCTTTGTTCGAGATAGCTTTACACTGT
TTGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCCTTTTTT
AGGGCGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCAAACAGATATTATACTTTGAACACAGCTAACTAGT
TAGCTTGGCTTCTACGTGCATGCAAACTGTGGACCATACTGGCCGGCCTGGACCAGGAACAAAAGATTTTGCTTAGTTAA
ATCTTACTCCCTCCGTAATTAA
>chr2A_1
CACGTAGGCCAGCAAAATGAGCCAGCTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAA-TGATCGCCT
CCATCGCTAGCCGCATTAGATGTAAAATCAACATTTTCAATAGTCATCGTGATGCCTAGGAATATAATCACTCAACTGTC
AACTTATTAAGCTTATTTTTGGTTTTTTTGAGAAACTATTAAGCTTATTTCCAGTCCGCTGCCCTTTCAACATGCGCAAA
AAATATTTTACCTTTATGTTCAAAACAAAACATGACGTAGTTTTCCCTAAAGAAAAGGACA--TCACGTAGTTTTATTAG
TACCATATTTCTAGGGTGCCACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACATGTATTATGAAA
ATATAGAACAAATGCAAATATAGTATTTTGATTAATAGTGACAATATTTAATAAATTAGTAGTCAACACCGACAAGTTTG
ACTGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAG----GCT
TGACTTTTTAGCATTGCTGTGGCCTCTTTAAGCAGAACATATACTGTTTAACTTCGAGCTGCTGAAACAATCAAGATGTA
TATGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAA--GTT
GCATGCGTCTCTTGAGATCGTCTAGTATCGAAAACCTGCATGTACATCTTGGAAAAGAAAAAGGC----ATTCCTTCTCC
TTTCCGTGAAGACGCACCACCCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCCGCTCTATAAATACATGCGC
CTCTTCTCACTTGTAGCTCGCCAGCACTAAAACAGCTCACGCTAGCTCCCTCAAACCACCTCCCGCGCTTAGCTACTTAA
TAAGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCTGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGC
AGGCGTGGTACATGCCGGCGATGCCGGTCACCTTGGCGGCGGAAACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAG
AGCGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCACCTCTTCTGCGGCATGGGCGTGCA
CCCCACCGTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCG
TCCCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCC
GCGCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCACGATATTGTCAGTG
ACACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGC
GTGTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTGTTTTTTTTTTACCACTACTGCCTCCGTCTTGTTTGAGCTTCTGGGA
GCTAGTGCGTGCATGCTTGCACTACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGA
TCTAGTGTTCATCTCCCTTTGATTAG-TATTTGGCTTGCCTTGTTTAAAACTTCTGTTAGTCGTGTGTTCATCCTTTGGC
ATT-TTGTCTCGTGTGTCCTTTCGGCGTTAATGGTCAGATGCTGGCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGT
TGCTATATGATAAGAGAAATTCTTATATATTAGATACACATAGAGAGACCGGGATACAACTACTATTCTTTGAAAAAATA
AAGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAATTATACAAACTTGATTTTGTAGAG
ACAAGTGGGCAACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATG
CTCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGCTATCTTTATGCTTTGTTCGAGATAGCTTTACACTGT
TTGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCGTTTTTT
AGGGCGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCAAACAGATATTATACTTTGAACACAGCTAACTAGT
TAGCTTGGCTTCTACGTGCATGCAAACTGTGGACCATACTGGCCAGCCTGGACCAGGAACAAAAGATTTTGCTTAGTTAA
CTCTTACTCCCTCCCTAA----
>chr2B_1
CACGTAGGCCAGCAAAATGAGCCAGGTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAACTAATCGCCT
CCATCGCTAGCCGCATTAGATGTAAA-TCAACATTTTCAATAGTCATCCGGATGCCTAGGAATATAATCACTCAACTGTC
AACTTATTAACCTA--TTTTGGTTTTTTTGAGAAACTACTAAGCTTATTTCCAGTCCGCTGCCCTTTCATCATGCGCACA
AATTATTTTACCTTTATGTTCAAAGCAAAACATGACGTAGTTTTGCCTAAAGAAAAGGACA--TCATGTAGTTTTATTAG
TACCATA-TTCAAGGGTGCGACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACAAGCATTGTGGCA
AAATAGAACAAATGCAAATATAGTATTTTGATTAATAGAAACAATATTTAATAAATTAGTAGTCAACACCGACAAGTCTG
ACTGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAGCTAGGCT
TGACTTTGTAGCGTTGATGTGGCCTCTTTAAACAGAGCATATACGGTTTAACTTCGAGCTGCTGAAACAATCCAGA--TA
TATGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAAAAGTT
GCATGCGTCTCGTGAGATGGTCTAGTATCAAAAACCTGCATGTACATCCTGGAAAAGAAAAAGGCATGCATTCCTTCTCC
TTTCCGTGAAGACGCACCACGCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCCGCTCTATATATACATGCGC
CTCTTCTCACTTGTAGCTCGCCAGCCCTAAAACAGCTCACGCTAGCTCTCTCAAACCACCTCCCGCGCTTAGCTACTTAA
TAAGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCGGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGC
AGGCGTGGTACATGCCGGCGATGCCGGTCACCTTGGCGGCGGAGACGGCGGCGGAGCGGGTGGAACGCCTGGCGTCGGAG
AGCGCCGTGGTGGTGTTCACCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCA
CCCCACCGTGCACGAGCTAGACCTCGATCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCG
GCCCCGGTGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCC
GCGCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCATCATATTGTCAGTG
ACACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGC
GTGTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTG-TTTTTTTTTACCACTACTGCCTCCGTCTTGTTTGAGCTTGTGGGA
GCTAGTGCGTGCATGCTTGCACCACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGA
TCTAGTGTTCATCTCCCTTTGATTAGTTATTTGGCTTGCCTTGTTTAAAACTTCTGTTGGTTGTGTGTTCATCCTTTGAC
ATT-TTGTCTCGTGTGTTCTTTCGTCGTTAGTGGTCAGATGCTGGCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGT
TGCTATATGATAAGAGAAATTCTTATATATTAGATACACATAGAGAGACCGGGATACAACTCCTTTTCTTTGAAAAAATA
AAGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAATTATACAAACTTGATTTTGTAGAG
ACAAGTGGGCTACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATG
CTCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGATATCTTTATGCTTTGTTCGAGAGAGCTTTACACTGT
TTGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCGTTTTTT
AGGGAGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCGAACAGATATTATACTTTGAACACAGCTAACTAGT
TAGCTTGGCTTCTACGTGTATGCAAACTGTGGACCATACTGGCCGGCCTGGA-CAGGAACAAAAGATTTTGCTTAGTTAA
CTCTTACTCCCTCCGTAA----
>SNPs
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-------------------S-S----------------------------------------------------------
------------------------S------------------------------------SS----S------------
---S-----------------------------------------------------------------------S----
---------------------------------------S--------------------------------S-------
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----------S-----------------------------------------------S---------------------
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------------------------------------------------------------S-------------------
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----------------------S------S--------------------------------------------------
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-------S------------------------------------------------------------------------
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---------------------------------------------------------------------S----------
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--------------------S-----------------------------------------------------------
---S------S--------------S------------------S-----------------------------------
--------------------------------S--S----------------------------------------S---
-------------------------------------------------------S------------------------
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--------------------------------------------S-----------------------------------
-------------------------------------------------------------------------S------
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S-----------------SSSS
>forward_308
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--------------------------------------------CCCTAAAGAAAAGGACACATCACC------------
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>reverse_1876
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-----------------------------------GCACATAGAGAGACCGGGAT-------------------------
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