>input_sequence_81342
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-----------------------------------------------------ATGCAGTACGGCGCGGCGGCCGAGCAG
GCGTGGTACATGCCGGCGATGCCGGTCACCTTGGCGGCGGAAACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAGAG
CGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCACCTCTTCTGCGGCATGGGCGTGCACC
CCACCGTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCGTC
CCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCCGC
GCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGA----------------------
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>chr2A_1_TraesCS2A01G285600
CGTAGGCCAGCAAAATGAGCCAGCTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAA-TGATCGCCTCC
ATCGCTAGCCGCATTAGATGTAAAATCAACATTTTCAATAGTCATCGTGATGCCTAGGAATATAATCACTCAACTGTCAA
CTTATTAAGCTTATTTTTGGTTTTTTTGAGAAACTATTAAGCTTATTTCCAGTCCGCTGCCCTTTCAACATGCGCAAAAA
ATATTTTACCTTTATGTTCAAAACAAAACATGACGTAGTTTTCCCTAAAGAAAAGGACATCACG--TAGTTTTATTAGTA
CCATATTTCTAGGGTGCCACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACATGTATTATGAAAAT
ATAGAACAAATGCAAATATAGTATTTTGATTAATAGTGACAATATTTAATAAATTAGTAGTCAACACCGACAAGTTTGAC
TGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAG----GCTTG
ACTTTTTAGCATTGCTGTGGCCTCTTTAAGCAGAACATATACTGTTTAACTTCGAGCTGCTGAAACAATCAAGATGTATA
TGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAA--GTTGC
ATGCGTCTCTTGAGATCGTCTAGTATCGAAAACCTGCATGTACATCTTGGAAAAGAAAAAGGCAT----TCCTTCTCCTT
TCCGTGAAGACGCACCACCCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCCGCTCTATAAATACATGCGCCT
CTTCTCACTTGTAGCTCGCCAGCACTAAAACAGCTCACGCTAGCTCCCTCAAACCACCTCCCGCGCTTAGCTACTTAATA
AGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCTGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGCAG
GCGTGGTACATGCCGGCGATGCCGGTCACCTTGGCGGCGGAAACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAGAG
CGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCACCTCTTCTGCGGCATGGGCGTGCACC
CCACCGTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCGTC
CCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCCGC
GCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCACGATATTGTCAGTGAC
ACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGCGT
GTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTGTTTTTTTTT-TACCACTACTGCCTCCGTCTTGTTTGAGCTTCTGGGAG
CTAGTGCGTGCATGCTTGCACTACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGAT
CTAGTGTTCATCTCCCTTTGATTAG-TATTTGGCTTGCCTTGTTTAAAACTTCTGTTAGTCGTGTGTTCATCCTTTGGCA
TT-TTGTCTCGTGTGTCCTTTCGGCGTTAATGGTCAGATGCTGGCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGTT
GCTATATGATAAGAGAAATTCTTATATATTAGATACACATAGAGAGACCGGGATACAACTACTATTCTTTGAAAAAATAA
AGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAATTATACAAACTTGATTTTGTAGAGA
CAAGTGGGCAACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATGC
TCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGCTATCTTTATGCTTTGTTCGAGATAGCTTTACACTGTT
TGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCGTTTTTTA
GGGCGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCAAACAGATATTATACTTTGAACACAGCTAACTAGTT
AGCTTGGCTTCTACGTGCATGCAAACTGTGGACCATACTGGCCAGCCTGGACCAGGAACAAAAGATTTTGCTTAGTTAAC
TCTTACTCCCTCCCTAAACTA
>chr2D_1
CGTAGGCCAGCAAAATGAGCCAGCTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAACTGATCGCCTCC
ATCGCTAGCCGCATTAGATGTAAA-TCAACATTTTCAATAGTCATCCGGATGCCTAGGAATATAATCACTCAACTGTCAA
CTTATTAAGCTTATTTTGGTTTTTTT--AGAAACTATTAAGCTTATTTCCAGTCCGCTGCCCTTTCATCATGCGCAAAAA
TTATTTTACCTTTATGTTCAAATCAAAACATGACGTAGTTTTCCCTAAAGAAAAGGACACATCACCTAGTTTTATTAGTA
CAATATTTCTAGGGTGCGACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACAAGTATTACGGAAAA
ATAGAACAAATGCAAATATAGTATTTTGATTAATAGACACAATATTTAATAAATTAGTAGTCAACACCGATAAGTTTGAC
TGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAG----GCTTG
ACTTTGTACCATTGCTGTGGCCTCTTTAAACAGAACATATACGGTTTAACTTCGAGATGCTGAAACAATCAAGA--TATA
TGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAA--GTTGC
ATGCGTCTCGTGAGATCGTCTAGTATCGAAAACCTGCATGTACATCCTGGAAAAGAAAAAGGCAT----TCCTTCTCCTT
TCCGTGAAGACGCACCACCCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCAGCTCTATATATACATGCGCCT
CTTCTCACTTGTAGCTCGCCAGCCCTAAAACAGCTCACGCTAGCTCTCTCAAACCACCTCCCGCGCTTAGCTACTTAATA
AGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCGGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGCAG
GCGTGGTACATGCCGGCGATACCGGTCGCCTTGGCGGCGGAGACGGCGGCGGAGCGGGTGGAGCGCCTGGCGTCGGAGAG
CGCCGTGGTGGTGTTCAGCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCACC
CCACCTTGCACGAGCTGGACCTCGACCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCGGC
CCCGGAGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCCGC
GCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCACCACATTGTCAGTGAC
ACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGCGT
GTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTG--TTTTTTT-TACCACTACTGCCTCCGTCTTGTTTGAGCTTGTGGGAG
CTAGTGCGTGCATGCTTGCACTACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGAT
CTAGTGTTCATCTCCCTTTAATTAGTTATTTGGCTTGCCTTGTTTAAAACTTCTGTTAGTTGTGTGTTCATCCTTTGACA
TTTTTGTCTTGTGTGTTCTTTCGTGGTTAGTGGTCAGATGCTGTCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGTT
GCTATATGATAAGAGAAATTCTTATATATTATATGCACATAGAGAGACCGGGATACAACTCCTTTTCTTTGAAAAGATAA
AGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAGTTATACAAACTTGATTTTGTAGAGA
CAAGTGGGCAACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATGC
TCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGCCATCTTTATGCTTTGTTCGAGATAGCTTTACACTGTT
TGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCCTTTTTTA
GGGCGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCAAACAGATATTATACTTTGAACACAGCTAACTAGTT
AGCTTGGCTTCTACGTGCATGCAAACTGTGGACCATACTGGCCGGCCTGGACCAGGAACAAAAGATTTTGCTTAGTTAAA
TCTTACTCCCTCCGTAA----
>chr2B_1
CGTAGGCCAGCAAAATGAGCCAGGTATTCTAACTTGGAGTACGAGGTCTAAGCGTCGCGTGAAGTGAACTAATCGCCTCC
ATCGCTAGCCGCATTAGATGTAAA-TCAACATTTTCAATAGTCATCCGGATGCCTAGGAATATAATCACTCAACTGTCAA
CTTATTAACCTA--TTTTGGTTTTTTTGAGAAACTACTAAGCTTATTTCCAGTCCGCTGCCCTTTCATCATGCGCACAAA
TTATTTTACCTTTATGTTCAAAGCAAAACATGACGTAGTTTTGCCTAAAGAAAAGGACATCATG--TAGTTTTATTAGTA
CCATATT-CAAGGGTGCGACTTTCACTGTTACACTTCATGTCAATATGGTGTACAGTATAAATACAAGCATTGTGGCAAA
ATAGAACAAATGCAAATATAGTATTTTGATTAATAGAAACAATATTTAATAAATTAGTAGTCAACACCGACAAGTCTGAC
TGCAATTCATTCTGTATTTCTTAACCAAGATAGCAGGAAGTTTGATGCAAAAATCCTAATTTGTGAAATAGCTAGGCTTG
ACTTTGTAGCGTTGATGTGGCCTCTTTAAACAGAGCATATACGGTTTAACTTCGAGCTGCTGAAACAATCCAGA--TATA
TGAAAATATATAGGCCTACCAAAATGCTGAAAGTATGCCAAGCACGCAATCAAAGAGGTTTTCAGGGTCTAAAAAGTTGC
ATGCGTCTCGTGAGATGGTCTAGTATCAAAAACCTGCATGTACATCCTGGAAAAGAAAAAGGCATGCATTCCTTCTCCTT
TCCGTGAAGACGCACCACGCTTGGACCCCAAAAGAAAAAAACGAAACGCCGCTGCCCCCGCTCTATATATACATGCGCCT
CTTCTCACTTGTAGCTCGCCAGCCCTAAAACAGCTCACGCTAGCTCTCTCAAACCACCTCCCGCGCTTAGCTACTTAATA
AGCAGTTGTTTAGCCACCTAATTAGCTAGTTAATTTCGCAGCGGTATCGAACAATGCAGTACGGCGCGGCGGCCGAGCAG
GCGTGGTACATGCCGGCGATGCCGGTCACCTTGGCGGCGGAGACGGCGGCGGAGCGGGTGGAACGCCTGGCGTCGGAGAG
CGCCGTGGTGGTGTTCACCGTGAGCAGCTGCTGCATGTGCCACGCCGTGAAGCGCCTCTTCTGCGGCATGGGCGTGCACC
CCACCGTGCACGAGCTAGACCTCGATCCGCGCGGCCTCGAACTGGAGCGCGCCCTCGCCGACCTCCTCGGCTGCGCCGGC
CCCGGTGGAGCCGCACCGGTCGTTCCCGTCGTATTCATCGGCGGCAAGCTGGTCGGCGCCATGGACCGCGTGATGGCCGC
GCACATCAACGGCTCCCTCGTGCCGCTGCTCAAGGAGGCCGGCGCTCTCTGGCTCTGAGCGCCATCATATTGTCAGTGAC
ACCGTTACTGGTTGGGGCTAATAGTAGGATAGATGTTTACATCCACAAAGGTCAGTTAATTATAGATCACTGGTGTGCGT
GTGCGTGAGTGTGAGAGAGTGAGAGGTCGGTG--TTTTTTTTTACCACTACTGCCTCCGTCTTGTTTGAGCTTGTGGGAG
CTAGTGCGTGCATGCTTGCACCACCAGTCTACCGGGTGTATGTGCGTGTGTGCAGTGTGCTCGATTGGTGCTAAAGAGAT
CTAGTGTTCATCTCCCTTTGATTAGTTATTTGGCTTGCCTTGTTTAAAACTTCTGTTGGTTGTGTGTTCATCCTTTGACA
TT-TTGTCTCGTGTGTTCTTTCGTCGTTAGTGGTCAGATGCTGGCTTCAGATTTTGGTTGCCTGTTTAATCTACAATGTT
GCTATATGATAAGAGAAATTCTTATATATTAGATACACATAGAGAGACCGGGATACAACTCCTTTTCTTTGAAAAAATAA
AGACAACTTATATTAAATTTGCTTAGCCAGATGAACATCAAATGGCTATAAATAATTATACAAACTTGATTTTGTAGAGA
CAAGTGGGCTACGTGTTCGTACCAATGGTCGGTGCTCGCCGGCCGGTGTAATTTTATTAGGGACCTTTCTGCATGCATGC
TCATCTTTTTGCATGAGCTAGCTAGCATTGCGTGTGTGCATGATATCTTTATGCTTTGTTCGAGAGAGCTTTACACTGTT
TGCTTCGCCTGTGTCTACTTGCTGCTTGCTTCTTGCCTCCTGCCCATGGCATCATATACTCATATCCTCTGCGTTTTTTA
GGGAGGCCCTCCCTTTTGTTAACATGCATGGCCGTGTAAAGCTCGAACAGATATTATACTTTGAACACAGCTAACTAGTT
AGCTTGGCTTCTACGTGTATGCAAACTGTGGACCATACTGGCCGGCCTGGA-CAGGAACAAAAGATTTTGCTTAGTTAAC
TCTTACTCCCTCCGTAAACTA
>SNPs
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------------------------S---------------------SS--------------------------------
-------------------------------------------------------------------S------------
S---------------------S---------------------------------------------------------
-----------------S------------------------------------------------S--------S---S
------------------------------------SS------------------------------------------
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-----S-----------------------S------------S-------------------------------SS----
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---------S------------------------------------S---------------------------------
-------------------------------------------------------------------S------------
-----------------------S----------------------S---------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------S--------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------------------------------------------S-
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-----------------------------------------------------------------S--------------
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--------------------------------SS---------------------------------------S------
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------------------------------------------------------------S----------------S--
----------------S------S-----S--------------------------------------------------
------------------------------------------------------------S--S----------------
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-------------------------------------------S------------------------------------
-------------S-------
>forward_228
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-------------------------------------------------CAGTCCGCTGCCCTTTCAA------------
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>reverse_1790
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-----------------------------ATGGTCAGATGCTGGCTTCA-------------------------------
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