>input_sequence_81338
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-------------------------------------------------------------------------------A
TGACGAGCCACCTTGCATACGGGCAAGCGTGCCGTGCATCGCAGGAAGCAGCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGTGGATGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCACGGCCGCTACAG
TCCCAACACGTCACAACTCGACCTGATCCGAGGCGTCGCCAAGCGCGTCGTGGACGTGGAGGCGTGCATCAAGGCCACGG
CGGCCCTGCGCGAGTGTTTTGCCGGCAACCCCGCGGTGTTCAAGCATCAGTACCTCCGCCGCATGGACGAGGGCCTCGAC
CAGGACACCAACCCGTCGCCGGATGATATTTCAAGGGATGAACGTGCCATGTTCAGGTGGTGGACTGGCATGAAGAGAAG
CTAA----------------------------------------------------------------------------
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--------------------------------------------
>chr1B_1_TraesCS1B01G473000
AGCTTCAGTTGAAAATACGGAGTGGAGAAAGAGATGCTCCGTAGATTCTTGTATTTCTTGGAGCAGTGGATTGACGAACA
GGCCTTTAGTAGCCAGAGCCATGCCCTCCACCCCTCTTGGCACTACTTGTCCGCGGTCTTGCCCGAGTGTGGACCCATTT
ATCCGTAAGCATATAGCCTGACACCATGGCCCCGGCTAAACCCAAGAAATCGTTGAGTCGCTTCGAGAACCGCTTCGACC
GCCTGCATCGGCTGTCGATAGGGAAGAACAGAATTCATCAGCGAATTATCATAATAATATGAACCCCAAAAAAAAGGATC
AGGACAAAGGATCAGCAGCATAGTCACAGAGTAATTAATACCACAGTGGGTCGTCGGGCCTAGGATCGATCTGCACGTAC
GGCAAGCTGCTGGAGCATGCCTACGTTCTGAAACCCTTCCTTGATGAGGCGGGTGTAGTATCGCCGTTCGTGTCGGCGAT
CAGGGTGAACAAATCTTCCTTCTTCTGTTTGATTTCCTTCAGCGCGTACTATAATACTCCCTCCGTTCCGATTTACTCGT
CGTGGTTTTAGTTCAAGAGTAAATCGGAACGGAGGGAGTACCTCTCAATCTGGGCATGCATGACAAGCGTTCAACTAGGC
AATCTGGCCATGATCGTTTTTCAGTACCTGAGCAGCGGT-GGAGGAGGCGGGAGTTTAGAGGCCGCAAGCGGCA------
--------------------------------------------------------------------------------
-------------------------------------------------------------GGCGGCCGTGCTCCAAGTC
GGCCACCT---CCAGGAAACCCCCCGACATGGACTGATCGTGATACGTACGGTGCCCCGTG-AACGGAGACCGATCGTGA
TACGTACGGTGCCGGGT-------------------------------------------GCAAGCCAATCGTCGCTTGG
TATTCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTACAT
GATATCTCTCTGTAATAAAGGGAGAAATACATAGT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGCGATCGACAGATCAATTTTGACCCTAGCTGGTAACGCCA
TGACGAGCCACCTTGCATACGGGCAAGCGTGCCGTGCATCGCAGGAAGCAGCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGTGGATGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCACGGCCGCTACAG
TCCCAACACGTCACAACTCGACCTGATCCGAGGCGTCGCCAAGCGCGTCGTGGACGTGGAGGCGTGCATCAAGGCCACGG
CGGCCCTGCGCGAGTGTTTTGCCGGCAACCCCGCGGTGTTCAAGCATCAGTACCTCCGCCGCATGGACGAGGGCCTCGAC
CAGGACACCAACCCGTCGCCGGATGATATTTCAAGGGATGAACGTGCCATGTTCAGGTGGTGGACTGGCATGAAGAGAAG
CTAATCAAGCATACTCGTAT---AGATATATAGACAGATGGGTTAGTCGATTATATTAGCATACTACTTGCTGGATATAA
TTAATAGGCACAAGCTATTTCGGTGTCTAATTTCTCTTTTCCTTTTAGTTGTCGAGTTCTTTTGGTATTGTA--------
--------------------------------------------------------------------------------
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------------------AGAGGATTAGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCGATCACACGTATGAGCGATGAAGTTACTATATACTGGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TAT--ATAATAGGCAAAAGTTATG
AGATTGTTTACAGTACAT----CTAATTAATATGAGCTGTCCATTCTTGATCA-TTCAATGGACTAGATCCATCAATACT
ACTGAACAAGAGTAGTATTTTCTGTCCAAAGATAAAATCGGAAGATAAACAAAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAAAATACTAAAA
CTCTACACGCAAAATCAAAACCGCGTGTTTTCTTCTCGATGCAGTCCATCCGTTCCGGGACTGTTGGCGGAAGCCCGATT
CAA---TTATTTTTCAATAGATCTAATCGCTTTGGAGCTTTTCATTTATTTCTCGCCTACACACAGTTTTGGTGTTACAA
GACTTTGCTAGTTGCTGGCGTGTTTTTGGATGTGT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GTGAGTTGGAGTTCGATATGTGCAACCTAGCCATGCAAAGACC
AGGTGTGTGCTCTTTGTTTTATGTATCTTCTTAATTCTCCATTCTAAGCCAACATAATCCACTTTTTTGGCGGAAAAAAG
GAGACGACGGTACCTTGCCTGGAAGACATCACGTACAAAGCTATCGAAGCTAGCCTCCCTAACTAGATCAATCATGTCCA
GATGCATTAGTACGATACATATGATGAGCATCCTTTTCTAAA----------------------ACACAAGTCGGCGGCG
GCACACAATCAACATATGCATACAATGCAATCGAATCTCGCTAGAACACAGGATGGGCGAACAATGGTGGC---------
---------AGCACATAGGGAATACATGGCGGACTGTCATACAGTATAGACGGATGCCGCCGTTGGCAGGCGCCGGCAAC
GATGTGCCTCCAAGAGGGGTTCTATAAATTACGAACCAAACATT
>chr1A_599
TACA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTCAATCTGGCCATGCATGACAAGCGTTCAACTAGGC
AATCTTAACATGATCGTTTTTGAGTACTTCGGCAGCGGTGGGAGGAGGCTGGAGTTTAGAGGCCGCAAGCGGCGGGCTGG
CGGGCCGTGGACGAGCCCCCTCGGCAGCTCCGCCACCCAGTGTCCACTGGAGCGCGTGCCGAATCGCCGGTGTCATCGCC
TACGATCCGACCAGTGGATTGCGAGGAGGAAAGGATTGAACACACATTTATATAGGCGCGCGGCGGCAGTGCTCCGAGTC
GGCCACGACGACCAGGAAACG-CCCGACTTGGACCGATCGTGATACGTACGGTTCCCGGTGCAACCGAGACCGATCGTGT
TACGTACGGCGGCGGATTTGGATTGTTCACAGCCAAACCTAAAACCTTATAGTATATATAGCAAGCCAATCGTCGGCTGG
TATTCTTATCTATTTTTGAAGCGAAATACGTAGCCATCGATCCACCGATCAGATCAATTGATTTCGTTGTTGACCCTAGC
TAGCTAACGCCATGGCGAGTACGTACATGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGAC
GAGAGGCTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCG
CTACAGTCCCGACACGTCATAACTCAACCTGATCCGAGATCAAACAAATCCTAGTACAAGTCGTAGGAGTTTACATCTGT
GTGAAAACCAGAACGATGTCAAGTTGTAAACGGCCTGGGATACACACAGTTGTAAACCAGAACGATGTCAAAATTTTGTA
CAAGTCGTGTTGGTCTCCGGTTCGGTGATGTGTGGGTTTGTGCCCCTTTATATAGCAGCCAGGCAAGACCAACGAAAAGG
TCACACGCACCACCAAAAATCAATTTCGATCCGTGTTTTTCTATTGCAAGTTTACATAGGCGACAGTTTCCGCCGGCTAA
GGACCAAAATCGATCATCTACCACAAGCTAGCATCACGTAGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCTGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTATATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATTTTTTTTGCATGAT
AATACGTGTCTTCATCGACCACAAGAGTTTTGTGTTCTCTCAGCGATCAACAACTCAAAACGGAGCTTCACCACAAGGCC
ATGTTGAAGATGACGGGACTCCAATTTTCCTTCAGGTACATGTGCGAGGCTGGGACAACGACGCCGCAGACGCTTGGTCT
CACGTAGGTCTCTTGCTCTCTGTTGACGCCCTGTCAGTGTGCCAATCTCAGTGGATGCAAGAGGTGGCCAACTTTCTACC
AGACAAACTCTAAAGTGTGAGACATGCTCCAGTGCCTTGCCTTGTCCAGCCCAAATGATCAAGGCTACGAGCTTCGACAA
GGTGTCACTTGCTTCAAAGAGAGACTATGGATCGGGGTGAACACCACGCTCGAGACCGAAGGGGGTGGGACGGGCCCACA
CCCGTGAAAATCAGGGGGGCGAGAGAAATTTATTAGGCAAGTTACGTACGATTAAGTAGACACTACGTAGGTGTAGCATT
TTCGTTTAGGTATGCGCTGAAAGAATTAGACCACGGCGTTATGTAGATGTAATGCACGATGATATCGATAATAGCCACCA
TTCATTGCTGTTGAGTGGCGTCTTAAAATAAATCAATCATCGCTTATTGACCGCGGCGTGGGACGAGGGAGTACATACTG
TTTTGGAGGAAATTTTCATCATGTGATATAACAGCTACACGAGAAGGAGGATCTCGCAGACATGACAACGAGCTCAATTA
AGTCAGTTGGGGATGGTACGGATGAGTAGGCTATGGAGGCATTTCGACGAACACCGTGCAGATGTCAGCGACAAAGCATT
TCGTCGTACACCATAAAGATGTTGGTTACTTGATCATGAAAATGTACAGAATAATCTAGTTGAATTTATGAAACGGGTTT
GTTAATTCTCATCTAGGTAAGAATTAACAATGTCTGTCTAAGAGCATCTACAGCCAGGCGCCCAATACTCTCCTCAAACG
CCAGGGCAGTTGGTCCGGTCACTTATCAATCAGAAAAAAGTCAACACTGACGGACGCCTCAAACCAACCTTAAACGCCCA
AGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGGCAG
GGGGGCGGCCACTGCGGGCCCCCAAACTCTAGGGGCCACTTCCCAGGTATGCTTCATGTACGCATGAGGCCTGAGGCATG
CTGCTACGATGTGTGAGCAGAGGAGTAACTCCTATTTTTTCCATCCGGGATCGTGCTGCTTCCCTCCCTACGATGCAAGT
CACGCCCTACGCGGCGGCCGCCAGGAAACAAATGCGCGAGGCCGCAAGCGGATCCAGCGGGTTGCGACGTTCAGACGGCC
TGCCGGGAACAAGATGGTTGGCTTGTTGCTTCTGATCTGATTGCTCCAGGACTCCTTTTGTTTTTCTACCACAAAGCTCC
TTCCACCTATGATATGTGTATCAAGCAGTCGATCACACCAGTTCACCCATCAGCCCTATTTGCTTCACCGGCCGGATCTC
CTAGGTATACTATTAATCACTAATTCACTAACCATTGTCACTACATGTATGTTGGCAATTAGATTATTTTAGCTCAACAG
ATTTTGTAATTGTTGTGTTTTAGCACTGCCTGATATTATATCATCTGGAAAGTATCGATTTGGTAATGAGCAAGAAAAAG
GAAAATAGGCTTATGGATGAGTTAATATAATTACAGAGAGGAACTATGGATAAATTTTATCAAGAGTAATAGGGGCACTT
CGACGAGTTGGCAGTAATTCCCGTGGACGAACCAACTACTGTTGTTAAGAATCAAGTAAGTGTTTATGATTCTATTTGTT
ATTTGAATCAACATTAAGATGTTTTGTAGAAATTATTTTAGTGCATTGAATATTACGTCCTAAATTGATGAGTATTATAA
CACTACATACATACATTTTAATGTGTCCCTGTTGCAACGCACGGGCGTTCTTCTAGTAT--ATAATAGGCAAAAGTTATG
AGATTATTTACAGTACATCTAC--------TATGAGCTGTCCATTCTTGATCAATTCAATGGACTAGATCAATCAATATT
ACTGAACAAGAGTAGTATTTTCTGTCCAAAGGTAAAATCGGAAGATAAATAAAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAAAATACTAAAA
CTCTACACGCAAAATCAAAACCGCGTGTTTTCTTCTCGATGCAGTCCATCCGTTCCGGGACTGTTGGCGGAAGCCCGATT
CCTCAGTTATTTTCCAATAGATCTAATCGCTTTGGAGCTTTTCATTGAATTCTCGCCTTCATACAGTTTTGGTCTTACAA
GACTTTGCTAGTTGCTCGCGTGTTTTTTGGTATGCGTGAGTTGGTGTTTTTTTTGAACATCAGTACAGACACAAGGGTTC
ATATACACGCGCATACACTCACCTCTATGAACGTACATACGCACATCCTATCCCTACGAGCACCTCCGAAAGACTGAGCC
GGCATATCATCTTGAGACTTACGAATTCATCGTAGGCGCCTCGTCGTCGACGAGAACGTCTCCTCCCACTGAATGAGCAT
CACCGGAAATCTTAGAATAAATCCAGAAATAAATGTGAGCACCAGGATTTGAACCCTAATGGGCTAGGGATATATACCGC
AGTCTCTCTAACCATCCAACCACAAGTTGGTTCGCACGTGAGTTGGTGTTCGATGTGTGCAACCTAGCTATGCAAAGACC
AGGTGTGTGGTCTTTGTTTTATCTATCT-CTTAATTCTCCATTCTAAGCCAACAAAATCCACTTTTTTGGCGGGAAAAAG
GAGATGACTGTACCTTGCCTGGAAGACATCACGTACAAAGCTATCGAAGCTAGCCTCCCTAATTAGATCAATCATGTCCA
GATGCATTAGTATGGTATATATGATAAGCAGCCGATAGATCCGGCGATCACGCATGGTATACGTACACAAGTCGGCGGCG
GCACGCAATCAACACATGCAGACAATGCAATCGAATCTCGCTAGAACACAGGATGGACGAACAATGGTGGCCGCACCGCA
TGACGAGTGAGCACATAGGGAATACATGGCGGGCTGTCATACAGTATAGACGGATGCCGCCGTTGGCAGGCGGCGGCAAC
GATGTGCCTCCAAGAGGGGTTCTATAAATTACGAACCAAACATT
>chrUn_955
CAT-----------------------------------------------------------------------------
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-------------------------------------GTAGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTACATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
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>chr1A_955
CAT-----------------------------------------------------------------------------
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-------------------------------------GTAGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTACATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
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>chr1A_955
CAT-----------------------------------------------------------------------------
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-------------------------------------GTAGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTACATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
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>chr1D_959
--------------------------------------------------------------------------------
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---------------------------------GT---------------------------------------------
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---------------------------------------AGCGATCGACCGATCAATTTTGACCCAAGCTGGTAACGCCA
TGACGAGCCACCTTACATACGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAAATCGACCTGATCCGAGGCGTCGCCAAGCGCGTGGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CGGCGCTGCGCGAGTGCTTCGCCGGCAACCCCGCCGTGTTCAAGCACCAGTATCTCCGCCGCATGGACGAGGGCCTCGAT
CAGGACACCAACCCGTCGCCGGATGATATTTTAAGGGATGAACGTGCCATGTTCAGGTGGTGGACTGGCATGAAGAGAAG
CTAATCAAGCATACTCGTAT---TGATATATAGACAGATGGGTTAGTCGATTATATTAGCATACTACTTACTGGATATA-
--------------------------------------------------------------------------------
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--------------------------------------------
>chrUn_959
--------------------------------------------------------------------------------
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---------------------------------GT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------AGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTACATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chrUn_959
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------AGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACATATATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr1A_959
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACGTACATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr1A_959
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGCGATCGACCGATCAATTTTGACCCAT-----TAACGCCA
TGCAGGCGAGCCTTACATATGGGCAAGCGTGCCGTGCATCGCAGGAAGCATCAATGGCCGGCGCCAGGTGCGACGAGAGG
CTCGTCATACATCACGTGACCAACGGCGGGTGCTTCGACGACTTCAACAAGGCGATGGAAGAGTGCCGCGGCCGCTACAG
TCCCGACACGTCACAACTCAACCTGATCCGAGGCGTGGCCAAGCGCGTCGTGGACGTGGAGGCGTGCGTCAAGGCCACGG
CAGCGCTGCGTGAGTGCTTTGCCGACAACCCCGCCGTGTTCAAGCACCAGTACCTCCGCCGCATGGACGAAGGCCTCGAC
CAGGACACCAACGCATCGCCGGACGATATTTGGAGGGATGAACGTGACATGTTCAGGTGGTGGACTGGCATGACGAGAAG
CTAAGCAAGCATACACATATATAAGATATATAGATAGATGGGCTAGTCGATTATAGTGACATACTAG-TACTGGATA---
-TAATAGGCACAAGCTATTTCGGTGTTGAATTTTTCTTTTCCTTTTAGTTGTAGAGTTTTTCGGATT-------------
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>chr1D_1462
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---------------------------------------------------------------CTCCTTACTGGATATAA
TTAATAGGCACAAGCTACTTCGTTGTCCAATGTCTCTGTTCCTTTTAGTTATCGAGTTCTTTTGGTATTGTA--------
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------------------AGAGGAGTAGA---------------------------------------------------
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----------------------------TCGATTATACATATGAGCGATGAAGTTAGTATATACTGGA------------
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--------------------------------------------------------TAGAAATAATAGGCAAAAGTTATG
AGATTGTTTCTAGTACATCTGTCTAATTAATATGAGCTGTTCATTCTTGATCA-TTCAATGGACTAGATCCATCAATACT
ACTGAACAAGAGTAGTATTTTCTGTCCAAAGGTAAAATCGGAAGATAAACAAAACAAAAACAGTTTTGCTAAAACACATC
TAGATGTGCCTTAAGTATTGCACATCTAAGTCCTCGAAGCACCCGCCGTTGGTAACGTGATGTATGACGAGCCTCTCATT
GATCTTAGACGAGTATCTCATTGATCTTACGTTGAGATTCGTGTGGATATTTTCTTTTTCCTGTTTCTTTTCTTTTTTAT
GCTTGAGTCACTCACTTAGATGTGCAATAATTAGAGCACATCTAGATGTGCCCTAGACACACCCAAAAAAAATACTAAAA
CTCTACACGCAAAATCGAAACCGCGTGTTTTCTTTTCGATGTAGTCCATCCGTTCCAGGACTGTTGGCGGAAGCCCGATT
CAA---TTATTTTCCAGTAGATCTAATCGCTTTGGAGCTTTTCATTTATTTCTCGCCTACACACAATTTTGGTGTTGCAA
GACTTTGCTAGTTGCTGGCGTGTTTTTGGATGTGCGC-------------------------------------------
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---------------------------------------GAGTTGGTGTTCAATATGTGCAACCTAGCCATGCAAAGACC
AGGTGTGTGCTCTTTGTTTTATGTATCTTCTT------------------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--------------------------
-----SSS-------------S-----S-SS------------------S-----------------------S------
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-------------------------------------------------------------------S-------S----
------SS------------SS------S-----S------------------S---S-------S-------------S
---------S-S---S-----------------------------------------------------------SS---
---------S---S-S-SS-SSS-S---SS--SSS--SS--SS-SSS--SSSSSS-SS-SSS-SSS-SSS-SS-SSSSSS
S-SS-SS-S-SS-SSSS-SSSSSS-S--S--SS-----------------------------------------------
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-------------------------------------------------S---------------S--------------
--------------S-----------------------------------S-----------------------------
--------------------------S--S-------------------------------------S------------
----S--------------------------------------------------------------S------------
----S-----------S-----------------S-----------S---------------------------------
-------------------------------S------------------------------------------------
---------------------------------------------------------------------S----------
---------------------------S----------------------------------------------------
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------------------------S-------------------------------------------------------
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--------------------------------------S-----------------S-----------------------
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-------------------------------S------------------------------------------------
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-------------S------------------------------------------------------------------
----------------------------------S---------------------------------------------
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----------------------------------------------S---------------------------------
------------------------------------------------------S------------------S------
----S---S-----------------------------------------------------S-----------------
------------S-S--S-------S----S--SS-SSSSSS--------------------------------------
----S---------S-----S-----------------------------------S-----------------------
--------------------------------S---------------------------------------S-------
--------------------------------------------
>forward_475
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-------------------------------------------------------TAGTATCGCCGTTCGTGTCG-----
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>reverse_5798
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-------------------------------------CTAAAACACAAGTCGGCGGC-----------------------
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--------------------------------------------
