>input_sequence_81334
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---------------------------------------------------ATGAGCAGGAACAATGGCAAGGGGCCGAA
GCTGGACCTGAGGCTGAGCTTCTCGCGGTCACGCGGCGGCGGCGGCGGC---GGCGGCGGCGGAGGGGGTCCATCGGCTG
CGCCGCCGGGAGGCAGCAACTCGCCGAGGAGGATGTCTTCGTCGTCTTCTTCCTCGGCATCCCCGCCGAGCTCGTGCGTG
TCGTCGGAGGGGAGCCCGGAGGCTGGCGGGGGCAGTGGTGGCTCGGCGATGATCCTCGCGGGCTGCCCCCGGTGCATGAT
GTACGTGATGCTGTCGCGGGAGGACCCCAAGTGCCCCAAGTGCCAGAGCACAGTGCTCCTCGACTTCAACGACGTGGGCG
CCGACCACCGCAACCCAGGGTTCGGCTCCGGCAAGGTCGGCAAGGGCAAGCGCGGCTGA---------------------
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>chr1A_1_TraesCS1A01G275700
GATTGTTGATGTGCCATTTGTTTGTGTGAACTTTTATGTGTCATGAACTTGGTTGGGTGATTTTGAACTTGGTTGGATGA
TGATGTGGCATGATTGTTGATTTGCTGTGCAATTGAACTATGTTATGCCTTTTATTTTGCATATTTGTTTAATGTTTGAA
ACATCATCACATTGTCAAAATGGACGTGTAAAATCTTATTTGCAAGCGCCGGCTGCTCGCGCACGCTGTAAGTTAGCACG
CCATATTTTACAGCGGCCGCTGGAGTCAGCGTCCTGCCGCGCGTAAAAACTGCTATTTCCATGCTGTAAAAAGGTTTTAG
TGCGCGTGGTTGCGCGCCTGCTAGAGATGCTCTTAGCGATGACTACAATTTAACCTAACACACATCGCC--------AAC
CACAGGAATGAGAAGAGGGACCTGACCTTTACTTGCAAAACCAAAACGGAGCTAGCATCGTGAGACGGAGGGGGGGCATG
GAGGGAAGCGACAGGGAGGGAATTTAAATGCTTCTGTTCAAGGCAATAAAGAACATCATCACCTCTCCACCTCGACGCAG
CTTAGCTGTCCGGCGCCCTCATTATATATCGCCACGGGAGCTGCACCACCACCCCTCAAATACTCAGGCACAGGGCAGGG
GGCTCTCACTTGGTCCGGTGTCCTTCACCCCGGCCGGCAGCGCTAGCTAGTACGTGCATGCAAGTGCCCTTCCAAGCGCG
CGCCTCCAAACCACCCTATCTCCA---CCTCCACCTCCACACCCACATTAGTTTGGTTTCGCGTACACGTTCCGTGTCAC
TAGCTGGGTAGCTTCAACGTACTCCAAAGGTAATGTACCGCGCGGCAACGTCGGCTATTTAATTGCATCGATGGATCATT
AGTATAGCTAGGTTGATGGAGGAGTATTCTGTTGATGTTGTTTTATGTTTGAGATCGAGCGAAAGCATGACATGAGCTAT
ATTTGGTGTGCATTGTGCAGTGCAGCGGTGGTGTGCGGAGTTAGCTTGAAGATGAGCAGGAACAATGGCAAGGGGCCGAA
GCTGGACCTGAGGCTGAGCTTCTCGCGGTCACGCGGCGGCGGCGGCGGC---GGCGGCGGCGGAGGGGGTCCATCGGCTG
CGCCGCCGGGAGGCAGCAACTCGCCGAGGAGGATGTCTTCGTCGTCTTCTTCCTCGGCATCCCCGCCGAGCTCGTGCGTG
TCGTCGGAGGGGAGCCCGGAGGCTGGCGGGGGCAGTGGTGGCTCGGCGATGATCCTCGCGGGCTGCCCCCGGTGCATGAT
GTACGTGATGCTGTCGCGGGAGGACCCCAAGTGCCCCAAGTGCCAGAGCACAGTGCTCCTCGACTTCAACGACGTGGGCG
CCGACCACCGCAACCCAGGGTTCGGCTCCGGCAAGGTCGGCAAGGGCAAGCGCGGCTGAACCGACCGGCCGGGCTTCTTC
GATCTAGATGCTTAGCCGTCGTGTCGTCGATCGCCTAGCTGC-----------------CGTCCTCTTTAGTTTCTCATC
AATCGTGTGCGTGCGTGTTCGTTGGTGTTGGTGTGTGCG----TGCGTGCGAGTTGGGTCAAGAAGAAAGGAATTATTCC
GTAGACCCGTCCCTTCCATGGACTAGCTAGTGGGACGCCGGGGTGCCCATGGAACGGGTCTAGGTAATAATTTCATCTGT
TGT---GTGAGTCGTGACTTCGTGCGTTTGTAGTACGGGGCAGTACTGGCAAGGATTAAGATTTTGTCTCTGAGGTTTTA
TAGAAGGCAGTAATGCGCTTGTCTCGCCCCGTCCTTTGGCGCCAGGCACAGCCGTGAAGCTTGACGCGGCCGGGGCATAA
ATACGCTGCAGTGACGCATTTCATTTCATACGGACGAACGACCGACGTCGAGCTATAGCTCTGGCTAGCTATGTCAGATA
GGCAGCTCATTCATTCTCGTTTAACTCGCGCACATGTCCTACGTACGCCGCATCGAGCGAACATACGTACGCACGTACGT
ACGTACGCCTGCATGCATAATAACCTTTTCTGAATATATACTGTATGTATGGTTTTTGCATGATAAATTGTACTACTAGT
ACTCC-TACTCAGAACATGCAAAGATCATCATGAGATTAACA----TGAATGAAGACTCGGGCAGTCAAATCAAAGTTGA
GAAAAGTCTTGTTTTCTCGAGACCATGCATGCACTAATAAAGCTCAGACAACTTTTCCTGCAAAATAAGTTTGCATGTTG
CACGGTTCAGACTTCAGACCACACACCACACCAGAGAGAAAGAAGCAAGGGAAGAGGCAGGCACGCATGGGAAGATGCTG
GGTGGTTAGAGTCATTCAAAGGGGAGACTATTGCGGATTAACTCGCTTTTAAACCCAGAATGAATGCACGAGTAATTGGA
GACAGTTGTGCAATAACAAAGAGGGGCATCGATCGTGTCAGGGCGCCG
>chr1D_350
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-----------------------------CTCTTAGCGACGACTACAATTTAACCTAACACACATCGCC--------AAC
CACAGGAATGAGAAGAGGGACCTGACCTTTACTTGCAAAACAAAAACGGAGCTAGCATCGTGAGACGGAGGGGGGCGATG
GAGGGAAGCGACAGGGAGGGAATTTAAATGCTTCTGTTCAAGGCAATAAAGAACATCATCACCTCTCCACCTCGACGCAG
CTTAGCTGTCCGGCGCCCTCATTATATATCGCCACGGGAGCTGCACCACCACCCCTCAAATACTCAGGCACAGGGCAGGG
GGCTCTCACTTAGTCCG-TGTCCTTCACC----CCGGCAGCGCTAGCTAGTACGTGCATGCAAGTGCCCTTCCAAGCGCG
CGCCTCCAAACCACCCTATCTCCATCTCCTCCACCTCCACACCCACATTAGGTTGGTTTCGCGTACACGTTCCGTGTCAC
TAGCTGGGTAGCTTCAACGTACTCCAAAGGTAATGTACCGCGCGGCAACGTCGGCTATTTAATTGCATCGATAGATCATT
AGTATAGCTAGGTTGATGGTGGAGTATTCTGTTGATGTTGTTTTATGTTTGAGATCGAGCGAATGCATGACATGAGCTAT
ATTTGGTGTGCATTGTGCAGTGCACCGGTGGTGTGCGGAGTTAGCTTGAAGATGAGCAGGAACAATGGTAAGGGGCCGAA
GCTGGACCTGAGGCTGAGCTTTTCGCGGTCAC------GCGGCGGCGGCCGTGGCGGCGGCGGAGGGGGTCCATCGGCTG
CGCCGCCGGGAGGCAGCAACTCGCCGAGGAGGATGTCTTCGTCGTCTTCTTCCTCCGCATCCCCGCCGAGCTCGTGCGTG
TCGTCGGAGGGGAGCCCGGAGGCTGGTGGGGGCAGTGGTGGCTCGGCGATGATCCTCGCGGGCTGCCCCCGGTGCATGAT
GTACGTGATGCTGTCGCGGGAGGACCCCAAGTGCCCCAAGTGCCACAGCACTGTGCTCCTCGACTTCAACGACGTCGGCG
CCGACCACCGCAACCCAGGGTTCGGCTCCGGCAAGGTCGGCAAGGGCAAGCGCGGCTGAACCGACCGGCCGGGCTTCTTC
GATCTAGATGCTTAGCCGTCGTGTCGTCGATCGCCTAGCTGCAATCG----------ACCGTCCTCTTTCGTTTCTCATC
AATCGTGTGCGTGCGTGTTCGTTGGTGTTGGTGTGTGCGTGCGTGCGTGCGAGTTGGGTCAAGAAGAAAGGAATTATTCC
GTAGACCCGTCCCTTCCATGGACTAGCTAGTGGGACGCCGGGGTGCCCATGGAACGGGTCTAGGTAATAATTTCATCTGT
TGTAGTGTGAGTCGTGACTGCGTGCGTTTGTAGTACGGGGCAGTACTGGCAAGGATTAAGATTTTGTCTCTGAGGTTTTA
TAGAAGGCAGTAATGCCCTTGTCTCACCCCGTCCTTTGGCGCCAGGCACAGCCGTGAAGCTTGACGCGGCCGGGGCATAA
ATACGCTGCAGTGACGCATTTCATTTCATACGGACGAACGACCGACGTCGAGCTATAGCTCTGGCTAGCTATGTCAGCTA
GGCAGCTCATTCATTCTCGTTTAACTCGCGCACATGTCCTACGTACGCCGCATCGATCGAACATACGTACGCACGTACGT
ACGTACGCCTGTATGCGTAATAACCTTTTCTGAATAC--------TACATGGTTTTTGCATGACAAATGGTAGTAGTACT
ACTACGTACTCAGAACACGCAAAGATCATCATGAGATTAACA----TGAATGAAGACTCGGGCTGTCAAATCAAAGTTGA
GAAAAGTCTTGTTTTCTCGAGACCATGCATGCACTAATAAAGCTCAGACAACTTTTCCTGCAAAATAAGTTTGCATGTTG
CACGGTTCAGACTTCAGACCACAC--CACACCAGAGGGAAAGAAGCAAGGGAAGAGGCAGGCACGCATGGGAAGATGCTG
GGTGGTTAGGGTCATTCAAAGGGGAGACTATTGCGGATTAACTCGCTTTTAAACCCAGAATGAATGCACGAGTAATTGGA
GACAGTTGTGCAATAACAAAGAGGGGCATCGATCGTGTCAGGGCGCCG
>chr1B_350
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-----------------------------CTCTTAGCGAGGACTACGATTTAACCTAACACACATCGCCAACCACACAAC
TACAGGAATGAGAAGAGGGGCCTGACCTTTACTTGCAAAACCAAAACGGAGCTAGCATCGTGAGACGGAGGGGGGCG--G
GAGGGAAGCGACAGGGAGGGAATTTAAATGCTTCTGTTCAAGGCAATAAAGAACACCATCACCTCTCCACCTCGACGCAG
CTTAGCTGTCCGGCGCCCTCATTATATATCGCCACGGGAGCTGCACCACCACCCCTCAAATACTCAGGCACAGGGCAGGG
GGCTCTCACTTGGTCCG-TGTCCTTCACC----CCGGCAGCGCTAGCTAGTACGTGCATGCAAGTGCCCTTCCAAGCGCT
CGCCTCCAAACCACCCTATCTCCACCTCCACCTCCAC----CCCACATTAGGTTGGTTTCGCGTACACGTTCCGTGTCAC
-AGCTGGGTAGCTTCAACGTACTCCAAAGGTAATGTACCGCGCAGCAACGTCGGCTATTTAATTGCATCGCTAGATCATT
AGTATAGCTAGGTTGATGGTGGAGTATTCTGTTGATGTTGTTTTATGTTTGAGATCGAGCGAGTGCATGACATGAGCTAT
ATTTGGTGTGCATTGTGCACTGCAGTGGTGCTGTGCGGAGTTAGCTTGAAGATGAGCAGGAACAATGGCAAGGGGCCGAA
GCTGGACCTGAGGCTGAGCTTCTCGCGGTCAC------GCGGCGGCGGC---GGCGGAGGCGGAGGGGGTCCTTCGGCTG
CGCCGCCGGGAGGCAGCAACTCGCCGAGGAGGATGTCTTCGTCGTCTTCTTCCTCGGCATCCCCGCCGAGCTCGTGCGTG
TCTTCGGAGGGGAGCCCGGAGGCTGGCGGGGGCAGTGGTGGCTCGGCGATGATCCTCGCGGGCTGCCCCCGGTGCATGAT
GTACGTGATGCTGTCGCGGGAGGACCCCAAGTGCCCCAAGTGCCACAGCACTGTGCTCCTCGACTTCAACGATGTCGGCG
CCGACCACCGCAACCCAGGGTTCGGCTCCGGCAAAGTCGGCAAGGGAAAGCGCGGCTGAACCGCCCGGCCGGGCTTCTTC
GATCTAGATGCTTAGCCGTCGTGTCGTCGATCGCCTAGCTGCGATCGACGAGCTACTACCGTCCTCTTTCGTTTCTCTTC
AATCGTGTGCGTGCGTGTTCGTTGGTGTTGGTGTGTGC----GTGCGTGCGAGTTGGGTCAAGAAGAAAGGAATTATTCC
GTAGACCCGTCCCTTCCATGGACTAGCTAGTGGGACGCCGGGGTGCCCATGGAACGGGTCTAGGTAATAATTTCATCTGT
TG---TGTGAGTCGTGACTGCGTGCGTTTGTAGTACGGGGCAGTACTGGCAAGGATTAAGATTTTGTCTCTGAGGTTTTA
TAGAAGGCAGTAATGCTCTTGTCTCGCCCCGTCCTTTGGCGCCAGGCACAGCCGTGAAGCTTGACGCGGCCGGGGCATAA
ATACGCTGCAGTGACGCATTTCATTTCATACGGACGAACGCCCTACGTCGAGCTATAGCTCTGGCTAGCTATGTCAGCTA
GGCAGCTCATTCATTCTCGTTTAACTCGCGCACATGTCCTACGTACGCCGCATCGATCGAACATACGTACG--------T
ACGTACGCCTGCATGCGTAATAACCTTTTCTGAATAC--------TGCATGGTTTTTGCATGACAAATGGTAGTACTAC-
--TACGTACTCAGAACACGGAAAGATCATCATGAGATTAACATGAATGAATGAAGACTCGGGCAGTCAAATCAAAGTTGA
GAAAAGTCTTGTTTTCTAGAGACCATGCATGCACTAATAAAGCTCAGACAACTTTTCCTGCAAAATAAGTTTGCATGTTG
CACGGTTCAGACTTCAGACCACAC--CACACCAGAGAGAAAGAAGCAAGGGAAGAGGCAGGCACGCATGGGAAGATACTG
GGTGGTTAGGGTCATTCAAAGGGGAGACTATTGCGGATTAACTCGCTTTTAAACCCAGAATGAATGCACGAGTAATTGGA
GACAGTTGTGCAATAACAAAGAGGGGCATCGATCGTGTCAGGGTGCCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------------------------------
---------------------------------------------------------------------------SS---
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-----------------S-----------SSSS-----------------------------------------------
---------------------------------------------------S----------------------------
------------------------------------------------------------------------S-------
-------------------S-------------------------------------------S----------------
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--------------------------------SSSSSS------------------------------------------
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---------------------------------------------S-----S-----------------------S----
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-------------------S------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------S-----------------------
----------------S-------------------SSSSSSSSS--S---------------S----S---S-----S-
---S-------------S--------------------------------------------------------------
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------------------------SS------------------------------------------------------
---------S----------------------------------------------------------------------
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>forward_258
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------------------------------------------------------------------------------CG
CCATATTTTACAGCGGCC--------------------------------------------------------------
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>reverse_1332
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---------------------------------------------------AGTGCTCCTCGACTTCAACG---------
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>forward_259
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-------------------------------------------------------------------------------G
CCATATTTTACAGCGGCCG-------------------------------------------------------------
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>reverse_1700
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-------------------TCGTGCGTTTGTAGTACGGG-----------------------------------------
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