>input_sequence_81323
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--------------ATGGCAATCTCAAAGGAGAACACAAGCGCCCTGATTTTGATGGCCCTCATGGTCATGGCCACTGTC
CTCTCCTCGTGCAACGCAAACAATGAGGTTATGTTACATCCATCCCTTTTCTCACCCCCATGAAGACAACTTCATGCGCA
TTATATAATAGTGAACTCCCCACAAAATTTATATATATATCTAGTATTGGGGAAACATAAGATGGTGAATAACCTTCCAC
AAAATCGGCCTAACAATGTGTGCTTTTGTGTTTGCAGAAACAGATAGATGCTCTCCCCCTACCCGATAAATGCTACAGCA
TGGAACTCCCTAACTGCACAAAGGAGGCGTGCGAGAAACTTTGCAACAGCCCAGGGGGGTATTGCAGGCTCGCATCCGAC
TGTTGTTGCCCTGTTTCCTAA-----------------------------------------------------------
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--
>chr5A_1_TraesCS5A01G320800
GGTCACAATGCTGAAAATAAATAATTTACCACTACCAGATGAATAATACTTTATTCTAGACAACAGAATAAGACACAATG
CTGAAATAATAATTATTTTTGCATCAATAGACAATTGCTCACCCGCAAAAATAAAAAAAAATCAATAGACAATTGTTGAG
CAGTGCCGATGTGCGGCTATTCATCTACGAGACTAGAAACCTCGATATGAATAGAAGATATACCTTGGGTGGTCGAATCG
TTCATAGACGTAGAGCAAATCAGGGTTGCGACGGCCCGCAGGGAATTGAAATTTGGTGGACGATCTGAATTAGGGAGGAA
AATTGAATTTAGGAGAAAAGGGAAAAGGAACGGCAAGCGCGCAATTACGAAGAGACAAGCGTCGGCGGCTGCTGGGAAAT
TGAGAATCGTTGCCTGAAATGCATGTGTGATGGA----------------------------------------------
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-------TTAGGAAGGGATCAATCAGTTCTTTTTTTTCGGCATGCACTTACTAGCTAACAAATCGGAAGGATCAATCAGT
TCCTTTTTTCCC-ACGTGCTCGTATTAACTAGGAACGAATCAATCGCTGGCTCCTTTCCTGGCTACTAGTACGTGCGTAC
GTTTCAGCCTGCTCCGTGAGGCCGAGGCGTCAAAATTGATGACCGAAAATATGTTTCGTCATAGCCTATTTTGTACACAT
GTATAAAAAAAGACACTGTTTATCAAAATTAATGTATTTATTTCATAGAGAAACCGCGGCTATATTAAAAGGATATCGTA
TTATTTTTTTTGCATCTAATGCATTAAGTTGGCAATAGGTGCTATTGACACAGAAGATATTGTTTCCGACAATCAAGGAT
TTAATTGACAACCAAAATATTGATAGGAAATATTATTTATTCACCATTAATTGTATGCCATAAAAAGATCCTCCGTATGC
ATCTATATAATTCCGTGAAAGAAACATTGCAATGCGCAAAAAAATACAAGCAGATCAACTGAGCATAAAACAAAGCATTA
GCAGGGCTCTCGAAATGGCAATCTCAAAGGAGAACACAAGCGCCCTGATTTTGATGGCCCTCATGGTCATGGCCACTGTC
CTCTCCTCGTGCAACGCAAACAATGAGGTTATGTTACATCCATCCCTTTTCTCACCCCCATGAAGACAACTTCATGCGCA
TTATATAATAGTGAACTCCCCACAAAATTTATATATATATCTAGTATTGGGGAAACATAAGATGGTGAATAACCTTCCAC
AAAATCGGCCTAACAATGTGTGCTTTTGTGTTTGCAGAAACAGATAGATGCTCTCCCCCTACCCGATAAATGCTACAGCA
TGGAACTCCCTAACTGCACAAAGGAGGCGTGCGAGAAACTTTGCAACAGCCCAGGGGGGTATTGCAGGCTCGCATCCGAC
TGTTGTTGCCCTGTTTCCTAAATGGGACTGAAATGATACAAAGATGCCATGAATAATTCAATGCATGTATGGATTATATA
TGGTAGTTCTAGCATATCAATATAAATTCTTTTTATCATCTTCATAATTTACAAATGAAAAAAGCTTGTTGTTTCTTTAG
TTCTGCAATGGCTGGTGTTGATCACGAATTATAGTTATAACCTACCTAAATACAACATGTGAAATAAAATGAAAACATGA
AAAAAAAGTCTAAACCATCTTGGAGATGAATTTCAGAAGGAAAAAACACATGTGGTCGCTATAAACACCTCAATAACCCA
ACAATTTTCTCACATGACATTCCAACCTATTAATGATAGCTTCCTCTTTTATCATGACAGTGAACCATCAAGGTACACCA
AATCTGAATGCTGCAAGATGTTATATTTT-----------------TACAAAATGTGGCAATGTAAATTAGCATTCATAA
ACAATCGAAGTTGCAAACCTTTGAAAATTAAAAAA-TCTTCTACAGGTCAATTGATCAATTGAAACAAATCCAAGGGTAG
TGGTGTGCAATATATTGCAGACTGCTCTGCTGGCCTATGTTTTGGTGGCCCCGTTTAAAGATCGTATACACTACTTGTTG
AGACTCAGCATGTGACAGTGACTCTTTATCGGAAAAAAA-CATGTGACAATGACTTTT--TGTTTCAATTAAATTTTGTG
CAAGTGCAAAAAGTAAAAAATAAAAACTATGGAATTTGTGCTCAGAACATGTGATCAATTTATGTATCGTGCCCGGGGTT
TTGCCCAAATCAGGCAGTGACTATCTTGGGGGAGCGATTGCTTAGACGAATGGGACAGGTCGGTGTTTCTCTCCTACTTA
AAAAAAAGAGAAAAAGTTACGTCGTTCATTCGGCCTTGGTCCAATCTTATCTATGGGCCCCCTTCCTCCCATCTTTGATT
TTTTTTCTTCATCGGTTTCCCCAGAAAACCGCTTCAACTAACCTACCTTTTGTTCTGTTACCATATAAGCTTATATTTTC
TT
>chr2A_2
-GTCACAATGCTGAAAATAAATAATTTACCACCACCAGATGAATAATACTTTCTTTGAGACAACAGAATAAGACACAATG
CTGAAATAATTATTATTTTTGCATCAATAGAAAATTGCTCATCCGCAAAAA------AAAATCAATAGACAATTGTTGAG
CAGTGGCGATGTGCGGCTATTCATCTACGAGACTGGGAACCTCGATATGAATAGACGATATACCTTGGGTGGTCGAATCG
TTCATAGACGTAGAGCAAATCAGGATTGCGAGGGCCCACAGGGAATTGAAATTTGGCGGACGATCTGAATTAGGGAGGAA
AATTGAATTTAGGAGAAAAGGAAAAAGGAGCGGCAAGCGCGCAATCATGAAGAGACAAGCGTCGGCGGCTGCTGGGAAAT
TGAGAATCGCTGCCTGAAATGCATGTGTGATGGA----------------------------------------------
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-------TTAGGAAAGGATCAATCAATTCCTTTTTTTCGACATGCACTTGCTAGCTAACGAATCGGAAGGATCAATCAGT
TCCTTTTTTTTCGACGTGCTCGTATTAACTAGAAACGAATCAATCGCTGGCTCCTTTCCTGGCTACTAGTACATGCGTAC
GTTTCAGCGTGCTGCGTGAGGCCGAGCCGTCAAAATTGATGA--------------------------------------
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--
>chr3D_2
-GTCACAATGCTGAAAATAAATAATTCACCATAAT-AGATGAATAATACTTTCTTCCAGACAACAGAATAAGACACAATG
CTGAAATAATAATTATTTTTGC--------------------------------------ATCAATAGACAA-TGTTGAG
CAGTGCCGATGTGCGGCTATTCATCTACGAGACTAGGAACCTCGATATGAATAGAAGATATACCTTGGGTGGTCGAATCG
TTCATAGTTGCAGAGCAAATCATGGTTGCGACGGCCCGTAGGGAATTGAAATTTGGCGGACGATCTGAATTAGGGAGGAA
AATTGAATTTAGAAGAAAAGGGAAAAAGAGCGGCAAGCGCGCAATCACCTAGAGACCAGCGTCGGCGGCTGCTGGGAAAT
TGAGAATCGCTGCCTGAAATGCATGTGTGATGGAGGATCCGGCTTGCCTGATCCCTCCCCATGTTCCCATCCATGCTCCC
GCTTCATCCTACGACTGTTTTTTTTTCCTTTTTCCTTTCTAATCTAATCAC--CCCCAATGATTTTAAGAGATGGGGCCG
GGCCTTATTAGAAAGGGGTTAATCAGTTTCTTTTTTTCGGCATGCACTTACTAGCTAACGAATGGGAAGGATCAATCAGT
TCCTTTT-TTTCGACGTGCTCGTATTAACTAGGAACGAATCAATCGCTGGCTCCTTTCCTGGCTACTAGTACGTGCGTAC
GTTTCAGCCTGCTGCGTGAGGCCCTGCCGTCAAAATTGATGACCGAAAATATGTTTCGCCATAGCCTACTTTGTACACA-
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--
>chr3B_141
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------------------------------------------------------------ATCAATAGACAATTGTTGAG
TAGTGCCGATGTGCGGCTATTCATCTACGAGACTAGGAACCTCGATATGAATAGAAGATATACCTTGTATGGTCGAATCG
TTCATAGCCGTAGAGCAAATCATGGTTGCGACGA-CCGCAGGGAATTGAAATTTGGCGGACGATCTGAATTAGGGAGGAA
AATTGAATTTAGGAGAAAAGGGAAAAGGAGCGGCAAGCGCGCAATCATGTAGAGACCAGCATGGGCGGCTGCTGGGAAAT
TGAGAATCGCTGCCTGAAATACGTGTGTGATGGAGGATCCGGCTTGCCTGCTCCCTCCTCATGCTCCCATCCATGCTCCC
GCTTCATCCTACGGTTGTC-TTTTTTCCTTTTTCCTTTTTAATCTAATCATCTCCCCATTGATTTTAAGGGGTGGGGCCG
GGCCTTATTAGGAAGGGGTCAATCAGTTTCTTTTTTTCGGCATGCACTTACTAGCTAACGAATCGGAAGGATCAATCAGT
TCCTTTT-TTTCGACGTGCTCATATTAACTAGGAACGAATCAATCGCTGGCTCCTTTCCTGGCTACTAGTACGTGCGTAC
GTTTCAGCCTGCTGCGTGAGGCCCTGCCGTCAAAATTGATGACCGAAAATATGTTTCGCCATAGCCTACTTTGTACACA-
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--
>chr5B_664
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-----------------------------------------------------------------------------CAT
GTATAAAAGAAGACATTGTTTATCAAAATTAATGTATTTATTTCATAGAGAAGCCGTGGCTATATAAAAAAGATATTGTA
TTAA-TTTTTTGCATCTAATGCATTAAGTTGGCAATAGGTGCTATTGACACAGAAGATGTTG-TTCCGACAATCCAGGAT
TTAATTGACAATCAAAATATTGATAGAAAATATTATTTATTTACCATTAATTTTATGCCATAAAAAGATCCCCAGTATGC
ATCTATATAACTCGGTGAAAGAAACAATGCAATGCACAAAAAAATATAAGAAGATCAACTGGGCATAAAACAAAGCATTA
GCGGGGCTCTCAAAATGGCAATCTCAAAGAAGAAGACAAGCGCCCTGATTTTGATGGCCCTCATAGTCATGGCCACTGTC
CTCTCCTCATGCAACGCAAACAATGAGGTTATGTTACATCCATCCCTTTTCTCA-CCCCATGAAGACAACTTCATGCGCA
TTCTATAATAGTGAACTCCCCATAAAATTTATATATAT--CTAGTATTGGGGAAACATAAGATGGTGAATAACCTTCCAC
AAAATTGGCCTCACAATGTGTGTTTTTGTGTTTGCGGATACAGATAGATGCTCTCCCCCTACCCGATAAATGCTACAGCA
CGGGACTCCCTAACTGCACAAAGGAGGCGTGCAAGAAACTTTGCAACAGCCCAGGGGGGTATTGCAGGCTCGCATCCGAC
TGTTGTTGCCCTGTTTCCTAAATGGGGCTGAAATGATACAAAGATGCCATGAATAATTCAATGCATGTATGGATTATATA
TGTTAGTTCTAGCATATCGATATAAATCCTTTTTATCATCTTCAGAATTTACAAATGAAAAAAGCTTGTTGTTTCTTTAG
TTCTGCAATGGCTGGTGTTGATCACGAATTAGAGTTATAACCTACCTAAATACAACATGTGAAACAAAATGAAAACATGA
AAAAAA--TCTAAACCATCTCGGAGATGAATTTCAGAAGGAAAAAACACATGTGATCGCTATAAACACCTAAATAACCCA
ACAATTTTCTCACATGACATTCCAACCTATTAATGATAGCTTCCTCTTTTATCATGACAGTCAACCATCAAGGTACACCA
AATCTGAATGCTGCAAGATGTTATATTTTCGTTCACTAAATGGATTTACAAAATGTGGTAATGTAAATTAGCATTCTTAA
ACAATCAAAGTTGCAAACCTTTGAAAATTAAAAAAATCTTCTACAGGTCAATTGATCAATTGAAGCAAATCCAAGGGTAG
CAGTTTGCAATATATTGCAGACTACTCTGCTCGCCTATGTTTTGGTGGCCCCATTTAAAGATCATATACACTAC-TGTTG
AGACTCAGCATGTGACAGTGACTCTTTATCGGAAAAAAA-CATGTGACAATGACTATTTCTGTTTCAATTAAATTTTGTG
CAAGTGTAAAAAATAAAAAT--AAAACAATGGAATTTGTGCTCAGAACATGCGATCAATTTATGTATTATGCCCGGGGTT
TTGCCCAAATCATGCAGTGACTATCTTGGGGGAACGATTGCTTAGACAAATGGGACGGGTCGGTGTTTGTGTCCTACTTT
AAAAAGAG-GAAAAAGTTATGTCGTTCGTTCGGCCTTGGTCCAATCTTATCTATGGGACCCCTTCCTCCCATCTTTGATT
T--TTTCTTCATCGGTTTCTCCAGAAAACCGCTTCAACTAACCCACCTTTTATTCTGTTACCAAATAAGCTTATATTCTC
TT
>chr5B_664
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-----------------------------------------------------------------------------CAT
GTATAAAAGAAGACATTGTTTATCAAAACTAATGTATTTATTTCATAGAGAAGCCGTGGCTATATAAAAAAGATATTGTA
TTAA-TTTTTTGCATCTAATGCATTAAGTTGGCAATAGGTGCTATTGACACAGAAGATGTTG-TTCCGACAATCCAGGAT
ATAATTGACAATCAAAATATTGATAGAAAATATTATTTATTTACCATTAATTTTATGCCATAAAAAGATCCCCAGTATGC
ATCTATATAACTCGGTGAAAGAAACAATGCAATGCACAAAAAAAGATAAGAAGATCAACTGGGCATAAAACAAAGCATTA
GCGGGGCTCTCGAAATGGCAATCTCAAAGAAGAACACAAGCGCCCTGATTTTGATGGCCCTCATAGTCATGGCCACTGTC
CTCTCCTCGTGCAACGCAAACAATGAGGTTATGTTACATCCATCCCTTTTCTCA-CCCCATGAAGACAACTTCATGCGCA
TTCTATAATAGTGAACTCCCCATAAAATTTATATATAT--CTAGTATTGGGGAAACATAAGATGGTGAATAACCTTCCAC
AAAATTGGCCTCACAATGTGTGTTTTTGTGTTTGCGGATACAGATAGATGCTCTCCCCCTACCCGATAAATGCTACAGCA
CGGAACTCCCTAACTGCACAAAGGAGGCGTGCAAGAAACTTTGCAACAGCCCAGGGGGGTATTGCAGGCTCGCATCCGAC
TGTTGTTGCCCTGTTTCCTAAATGGGGCTGAAATGATACAAAGATGCCATGAATAATTCAATGCATGTATGGATTATATA
TGTTAGTTCTAGCATATCGATATAAATCCTTTTTATCATCTTCAGAATTTACAAATGAAAAAAGCTTGTTGTTTCTTTAG
TTCTGCAATGGCTGGTGTTGATCACGAATTAGAGTTATAACCTACCTAAATACAACATGTGAAACAAAATGAAAACATGA
AAAAAA--TCTAAACCATCTCGGAGATGAATTTCAGAAGGAAAAAACACATGTGATCGCTATAAACACCTAAATAACCCA
ACAATTTTCTCACATGACATTCCAACCTATTAATGATAGCTTCCTCTTTTATCATGACAGTCAACCATCAAGGTACACCA
AATCTGAATGCTGCAAGATGTTATATTTTCGTTCACTAAATGGATTTACAAAATGTGGTAATGTAAATTAGCATTCTTAA
ACAATCAAAGTTGCAAACCTTTGAAAATTAAAAAAATCTTCTACAGGTCAATTGATCAATTGAAGCAAATCCAAGGGTAG
CAGTTTGCAATATATTGCAGACTACTCTGCTCGCCTATGTTTTGGTGGCCCCATTTAAAGATCATATACACTAC-TGTTG
AGACTCAGCATGTGACAGTGACTCTTTATCGGAAAAAAAACATGTGACAATGACTATTTCTGTTTCAATTAAATTTTGTG
CAAGTGTAAAAAATAAAAAT--AAAACAATGGAATTTGTGCTCAGAACATGCGATCAATTTATGTATTATGCCCGGGGTT
TTGCCCAAATCATGCAGTGACTATCTTGGGGGAACGATTGCTTAGACAAATGGGACGGGTCGGTGTTTGTGTCCTACTTT
AAAAAGAG-GAAAAAGTTATGTCGTTCGTTCGGCCTTGGTCCAATCTTATCTATGGGACCCCTTCCTCCCATCTTTGATT
T--TTTCTTCATCGGTTTCTCCAGAAAACCGCTTCAACTAACCCACCTTTTATTGTGTTACCAAATAAGCTTATATTCTC
TT
>SNPs
S-------------------------------S-------------------S---S-----------------------
-------------------------------S---------S---------SSSSSS-----------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------S-----------------------
-----------------------------S---------------S----------------------------------
---------S----------------------------------------------------------------------
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-----------------------------S-----------------------------S--------------------
---------SS---------------------------------------------------------------------
-------------S------------S-------------------------------S---------S-----------
--------S------S------------------------------------S---S--------S----S-----S---
---SS-----------------------------------------------------S---S-----------S-----
-----------S--------------S--------------S----------S------------------S-S------
----------S--S------------S--------S----------S---S----------S------------------
--S--------------------------S----------------------------------S---------------
------------------------------------------------------S-------------------------
--S-------------------S---------------SS----------------------------------------
-----S-----S----------S------------S--S-----------------------------------------
S-------------------------------S-----------------------------------------------
--------------------------S-----------------------------------------------------
--S---------------S--------S----------------S-----------------------------------
-------------------------------S--------------------------------S---------------
------SS------------S---------------------------------S---------------S---------
-------------------------------------------------------------S------------------
----------------------------------------------------------S-----------------S---
------S---------------------------------------------------------S---------------
SS--S------------------S-------S--------------------S----------S----------S-----
-------------------------------------------------------S------------------------
------S-----S------SSS-----S-----------------------S---------------SS-----------
------------S--------------------S-------------S--------S-----------S-S--------S
-----S--S----------S-------S-----------------------------S----------------------
-SS----------------S-----------------------S-------S-----------S-------------S--
--
>forward_734
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--------------------------------------------------------------------------GCGTAC
GTTTCAGCCTGCTC------------------------------------------------------------------
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>reverse_2368
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-----------------------------------------------GAATGGGACAGGTCGGTGTT-------------
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--
