>input_sequence_81319
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---------------------------------------------------------------ATGGTGCGGAAGGCGAA
GGTTGAGTTCGACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACA
GGGAGCACCTGGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGG
ATCGAGGGCGTCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGATGGGG
CAAGGACCACCGCCCGGCGGACCTGCACGGTACCGCCGCCCGAATCCTT-CTCTGCCTGCAGGCTATGGTTCC-GTTTGT
TTCACTGGCTGATATGGTTTGGTTGTTTGGTGTTGCGCAGAGCCCAAGAAGGTGGTTGAGGTCGAGGAGTAG--------
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>chr1B_1_TraesCS1B01G209000
CACACTTGGGTCACCTAAATATCCTAGCATGTACTTGGAAATGATTTAGCAGAATGCAACTACAGGTGACTGAAATCAGG
--------------TGATAGCCCCTAGGAGCACAGCCTGGATGGAAAACCTATAATGCCTAGCAGTTCCTTGTCTTCTTG
AGCGCTTGATCCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAGAAGAACATGCCAAACCGGAAATC
AAACCTTAAATTCTTATGCATTTTGTATCCCATTCTTGTAATCGTATTACACCACAATCTCAGTTCCTAGCGGGGTACAA
TAAACCATAGTCAACCTTAAACTCTTATGCCCATTTTGTATTTGAGTGAGATTTATGGTGTTGCTGTCTGTTGCTACCTG
GCCTGGAGACGAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGCGACCTGACCTCCTTTTGC
AGCGCCTCCATGACCTCCGACTTGAGCTCTGCGGGGGA---ACCAGACAGACCAATTCGACTGCTTAACTGAGAGGGGGA
GGACATGAAGGGAGGGGAACTAGGGCTTGCGAGGTGCCGAGGGGGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTA
GAGCGCGTCGATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCCCGCCACCCGCGCTCGCCGCCGAGACGGTCG
ACCTCGCCGGAGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTTCCGTAGGGGTGGTCACTGGTCAGACT
CAACAGCGAATTATAGGAACCCGCCAAGTGGGCCGTGTAAATGGGCCATATAAATGGGCCGGGCTGCTACTGCACTCTGT
CTGT---AAGTGGGAAGCCATCCGCTCGTCTCTCTCCCCCATTCCCCAATCCCCACGACGAGATCCATCCACCCCAGAGG
CCAAGAAGAGAAGGGAGGAGAGAGAGAGGCCGGCGGCGGCGGAGGAT---CAGACGATCGGAGATGGTGCGGAAGGCGAA
GGTTGAGTTCGACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACA
GGGAGCACCTGGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGG
ATCGAGGGCGTCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGATGGGG
CAAGGACCACCGCCCGGCGGACCTGCACGGTACCGCCGCCCGAATCCTT-CTCTGCCTGCAGGCTATGGTTCC-GTTTGT
TTCACTGGCTGATATGGTTTGGTTGTTTGGTGTTGCGCAGAGCCCAAGAAGGTGGTTGAGGTCGAGGAGTAGCTC---TG
CTTCCGCTGCCGTTCCTGGAATGGAGAGGTCAGGGTGCTTCTTGTTATT-------------------------------
-------ATGTACGCTCGATGCAGTTTATGGTGAAATGCACATGATTTGTTTCAAATGTTTACCATTCCATTAACCAA-T
TGAGATCTCTGTTTGGGGTCACATCGCCATGCTTAGATAGTTGAGAGCTTGGGAATGTAGTAGTAG---AACACCAAACA
TTAGCACTGGTGAACATTTTTGGTTTATAAGGGGGTTTGAACTAGGACAAAAGGTTTTGTCCAAGAGTTGAGGAGGAAGG
CGGAAGGGGTTTGAACTGGAAGGGTGTTTGTCTTGGCATCTTAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTATTGA
AATGGATTTTCCTCTTGTCGAACAACAAATACTGCTTGTCATGCAGACGAGCGGTATTAAATCCTAAAACTTCCCAAAGA
AATATCCCTCACTCTAATGCCCACTAAGTTGACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGTTATCTGT
TAAGGGGCTAGCATCGTTTTCCCTATG-TGTTACCTCGCTGCTAAGACTCACTATTGCTGCTGGCCTATTTCTTATTTTT
CCTGAACCTAAGATATTTGAATCAAAAT----------------------------------------------------
---CTACATGAAGTCAACTTTATGTAGTGTTTACATTTAGTGATATCCAGACAACTAATATTTTTGGATGTTTTTGGTTC
TTGCGGTCATATTTCCCTGGATCAAATCATGATCGATTCATAATTTTGTTAGCCATCATCATACCTTATCTGGCCTAACG
CTGAAAGGATATCATGATTCACACATCCATGCTATAACCTTGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGATG
TGCTCTGCTACTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCACTCTGCTCTTTCAGAGTACGAGGAGTATCTTTG
CTAAGCA-ATTTGTCATTGCATCACCCCTTTTGGGAGTGAGCTAAAGCTACTCT
>chr1D_1
CACAATTGGGTCACTTAAATATCCTAGCATGTACTTGGAAATGATTTAGCAGAATGAACTAA---------------AGG
--------------TGATAGCCCCTAAGAGCACAGCCTGGATGGAAAGCCTATAATCCCTAGCAGTTCCTTGTCTTCTTG
GACGCTTGATCCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAGAAGAACATGCCAAGCCGGAAACA
AACATAAAC------------------------TCTTGTGATCGTATTGCA-AACAGTATCAATTC--------GAACAA
TAAACCATAATCAACCCTAAATTCTTATGCTCATTTTGAATTTGAGTGAGATTTATGGTGTTG----------TTACCTG
GCCTGGAGATGAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGCGACCTGACCTCCTTTTGC
AGCGCCTCCATGACCTCCGACTTGAGCTCTGCGGGGGGAAGACCAGCCAGACCAATTCGACTGCTTAACCGAGCGGCGGA
GGAGAAAAGTGGAAGGGGACTA-GGGTTGCGAGGTGCCGATGGCGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTA
GAGCGCGTCGATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCGCGCCTCCCGCGCTCGCCGCCGAGACGGTCG
ACCTCGCCGGAGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTTCCGTAGGGGTGGTCACTGGTCAGACA
ACG----GAATTATAGGACCCCGCCAAGTGGGCCGTG-------------TAAATGGGCCGGGCTGCTACTGCACTCTGT
AAGTGGGAACTGGGAAGCGATCCGTTTGTCTCTCTCCCCCATTCTCCAATCCCCACGACGAGATCCATCCACCCTAGAGG
CCAAGAAGAGAAGGGAGGAGAGAGAGAGGCCGGCGGCGGCGGC---GGAGCAGGCGATCGGAGATGGTGCGGAAGGCCAA
GGTCGAGTTCGACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACA
GGGAGCACCTGGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGG
ATCGAGGGCGTCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGGTGGGG
CAAGGACCACCGCCCGGCGGACCTCCACGGTACCGCCACCCGAATCCTAACTCTGCCTTCAGGCTATGGTCTCGGTTTGT
TTCACTGGCTGATATGGTTCGGTTGACTGGTGTCGCGCAGAGCCCAAGAAGGTGGTCGAGGTCGAGGACTAGCACGGTTG
CTTCCGCCGCCATTCCTGGAATGGAGAGGTCAGGGTGATTCTTGTTATT-------------------------------
-------ATGTACGCACGATGCAGTTTGTGGTGAAATGCACATGATTTGTTTCAAATGTTTATCATTCCATTAACCAA-T
TCAGATTTCTGTTTGGGGTCACATCGCCATGCTTAGATAGTTGGGAGCTTGGGAATGTGGTAGTAC---AACACCAAACA
TTAGCACTGGTGAACATTTTTGGTTTATA-GGGGGTTTGAACTAGCACAAAAGGTTTTGTCGAGGAGTTGGGGA------
-GGAAGGGGTTTGAACTGGAAGGGTGTTTGTCTTGGCACC-TAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTATTGA
AATGGATTTTCCTCTTGTCGAACAAGAAATACTGCTTGTCATGCGGACGAGGGGTATTAAATCCTAAAACTTCCCAAAGA
AATATCCCTCACTCAAATGCCCACTAAGTTGACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGATATATGG
TAACGGGCTAGCATCGTTTTCCCGATG-TGTTACCTCGCTGCTAAGACTCACTGTTGCTGCTGGCCTATTTCTTATTTTT
CCTGAACCTAAGTTATTTGAATCAAAAT----------------------------------------------------
---CTACATGAAGTCAACTTTATATAGTGTTTACATTTAGTGATATCCAGACAACTAATATTTTGGGATGTTTTTGGTTC
TTGCGATCATATTTCCCTGGATCAAATCATGATCGATTCGTAA-TTTGTTAGCCATCATCATACCTTATCTGGCCTAACA
ATGAAAGGATATCATGATTCACACATCGATGCTATAACCTAGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGGTG
TGCTCTGATACTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCAGTCTGCTCTTTCAGAGTACGAGGAGTATCTTTG
CTAAGCG-ATTTGTCATTGCATCATCCCTTTTGGGAGTGAGCTAAAGCTAC---
>chr1A_1
CACACTTGGGTCACTTAAATA---TAGCATGTACGTGGAAATGATTTAGCAGAATGAACTAC---------------AGG
TGAGTGGAATCAGATGATAGCCCCTAGGAACATAGCCTGGATGGAAAGCCTATAATCCCTAGCAGTTCCTTGTCTTCTTG
GACGCTTGATCCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAAAAGAACAAACCAAGCCGGAATCA
AACATAAAC------------------------TCTCGTGATCGTGTTACA-CACAATCTCAATTCCTAGCTGGGAACAA
TAAACCATAATCAACCTCAAACTCGTGTGCTCATTCTGTATTTCAATGAGATTTACGGTGTCACTGTGTGTTGTTACCTG
GCCTGGAGACGAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGAGACCTGACCTCCTTTTGT
AGCGCCTCCATGACCTCCGACTTGAGCTCTGCGGGGGA---ACCAGACAGACCAATTCGACTGCTTAACTGAGAGGGGGA
GGACATGAAGGGAGGGGAACTAGGGCTTGCGAGGTGCCGAGGGGGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTA
GAGCGCGTCGATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCCCGCCTCCCGCGCTCGCCGCCGAGACGGTCG
ACCTCGCCGGAGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTCCGTGTGTGTGGGTCACTGGTCAGACT
CAACAGCGAATTATACGACCGCGCCAAGTGGGCCGTGTAAATGGGCCATATAAATGGGCCGGGCTGCTACTGCGCTCTGT
AAGTGGGAA-------GCCATCCGTTCGTCTCTCTCCCCCATTCCCCAATCCCCACGACGAGATCCATCCACCCCAGAGG
CCAAGAAGAGAGGAGA-GAGAGAGAGAGGCCGGCGGCGGCGGCGGAGGAGCAGGCGATCGGAGATGGTGCGGAAGGCGAA
GGTCGAGTTCGACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACA
GGGAGCACCTGGTGCGGGAGAAGTGGATCCAGATTGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGG
ATCGAGGGCGTCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGGTGGGG
CAAGGACCACCGCCCGGCGGACCTCCACGGTACCGCCGCCCAAATCCTAACTCTGCCTTCAGGCCATGGTCTAGGTTTGT
TTCACTGGCTGATATGGTTTGGTTGTTTGGTGTCGCGCAGAGCCCAAGAAGGTGGTCGAGGTCGAGGAGTAGCACGGTCG
CTTCCGTCGCCGTTCCTGGAATGGAGAGGTCAGGGTGCTTCTTGTTATGCTCAGAATCTTAGTTATTATGCACATGATTT
GTTTCAAATGTACGCACGATGCAGCCTATAGTGAAATGCACATGATT-------AATGTTTATCATTCCATTCACCCACT
TCAGATTTCTGTTTGGGGTCACATCGCCGTGCTTAGATAGTTGGGAGCTTGGGAATGGTGTAGTAGTAGAACACCAAACA
TTAGCACTGGTGAACATTTTTGGTTTATA-GGGGGTTTGAACTAGGACAAAAGGTTTTGTCGAGGAGTTGAGGA------
-GGAAGGGGTTTGAACTGGAAGGGTGTTTGTCTTGGCACCTTAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTACTGA
AATGGATTTTCCTCTTGTCGAACAACAAATACTGCTTGTCATGCGGACGAGGGGTA-TAAATCCTAAAACTTCCCAAAGA
AATATCCCTCACTCAAATGCCCACCAAGTTTACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGATATATGG
TAATGGGCTAGCATCATTTTCCCTATGTTGTTACCTCGCTGCTAAGACTCACTGTTGCCGCTGGCCTATTTCTTATTTTG
CCTGAACCTAAGATGTTTGAATGAAGATCTACATGAAGTCAACTTTATATAGTGTGTACATTTAGTGATATTTGAATGAA
GGTCTACATGAAGTCAACTTTATATAGTGTGTACATTTAGTGATATCCAGACAACTAATATTTTTGGATGTTTTTGGTTC
TTGCGGTCATATTTCCCTGGATCAAATCATGATTGATTCGTAA-TTTATTAGCCATCATCATACTTTATCTGGCCTAACG
CTGAAAGGATATCATGATTCACACATCCATGCTATAACCTTGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGATG
TGCTCTGCTACTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCAGTCTGTTCTTTCAGAGTACGAGGAGTATCTTTG
CTAAGCAAATTTGTCATTGCATCACCCCTTTTGGGAGTGAGCTAAAGCTACTCT
>SNPs
--------------S-----------------------------------------S-SSS-SSSSSSSSSSSSSSS---
-----------------------------------------------S--------S-----------------------
SS--------------------------------------------------------------------S-------SS
--SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS------S-----------S----------S--------S---S----
---------S--------------------S------------------------------------S-----S------
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------------------S-------------------------------------------------------------
SS-------S--------------S-------------------------------------------------------
------------------------------------------S---S------S--------------------------
---S----------------------------------------------------------------------------
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--------------------------------------------------------------------------S-----
------------------------S-----------------------S---------S-----------SS--------
---------------------------------S----------------------S----------------S------
-------S------------------------------------------------------------------------
---------------S----------------------------------------------S-----------------
-S----S------------------------------------S--------------S---------------------
-----------------------------S-------------------------------S-S----------SSSSSS
S-------------------------------------S-----------------------------------------
--------------------------------------------S------S----------------------------
--------------S---------------------------------------------------------S---S--S
---S-------------------------------------------------S--------------------------
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-----------------------S--------------------------------------------------------
---------------------------------------S---S------------------------------------
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-----------------------------------------------S--------------------------------
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>forward_316
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--------------------------------------------------------ATCTCAGTTCCTAGCGGGGT----
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>reverse_1761
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CGGAAGGGGTTTGAACTGGA------------------------------------------------------------
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