>input_sequence_81305
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATGTCGAGCAGAAGGT
CGTCGCGCGGCGCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCT------CACAACAGCGATGCACACGCAC----ATTACTCTACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACGGGG-AGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr6D_1_TraesCS6D01G285300
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGTTGCACGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAATGACGGAAGGGTGG-------AGAGAAGAGGTCATCGATCCATGTCCCTGTTTAGCTTT--------A
CAAGGTGCGTGTTCTTTCTCCGAAAAGCTTGTTACTCCATGATCAAAACTCTCAATTTGCACTACTCGGCTAATTAGGCA
ATGCCGACGATTGGCAGGGGTTTGATTCGTCCACACATCAGTTCGTGGTACATACACGTACG----CTTAACAAGGCTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTCGGATAACATCAAATCACAACCTCAAACGCAACGAATGATCTTGTCG
ATTTCCTGGACGTTGCTGGATCGGTCAGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACTG
AACAGTCCTGCAAGGCAGCATGGGGCACATGGCCAGTGGTGGGTGGTCATTTAAGTAGGGCCCAACGAGCTGCCTCTCCA
CCTGTGGGGCCCACGCGCCGATGACAGTGGGGCCCGGGAGGCCTGGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCT-ACCCCGTTAGCGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGGGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCTCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCAGCTCGACGTCAGCGAGGGCCTCCCTTCGCTCA
CCGGCCAACCGCCCGGCACCTTTTGAGCGTACACACTCCGTAGCTTTGTT----AGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTTGCTCATCCCGGCCGGCCAGCGACGTAGCAGCGGCTAGGAAGAAGATGTCGAGCAGAAGGT
CGTCGCGCGGCGCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCT------CACAACAGCGATGCACACGCAC----ATTACTCTACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACGGGG-AGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGATCGTACCACAGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCAGCGGCGCCAT
GGGTCTCTCCGCCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTAATGTCTCTTTTCTGCTCCCTTTCTGCCTAGATCTGATCGTGTAGATCAAAAAATGTACTGCGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTTTCGATCGTCTCCTCCGTGTGCTTCCCTCGCTAGCTCGGAGCTGGATAGATAGCTCCCCCCGT
CCTCCTGTCTGCCTCTTCCCC-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CTTTTGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATAG
ACAACCGACCGACCACTACTACGGTACTACTACTACCTA---GAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACG---TACTACGAGATCAAATTAATACTAGACTGGAGTGTACTGTACTGTACCGTACTGT
TCTTTTTTATGTATGGTATTAAGAT---ATGCAAATGATGCCGGGCTTTCATGCTTGCTTCCTCTAATGCCCTCTCGCCC
TCGATCGGCCCTAT----CCGTACGTACGCACGTGAAGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTAGG
CTATGCTATTTAT--ACTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCGCTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGATGCTACGACCAGTGACTCTGCTTGTGCTACGGAAACGGCACGGCGTTGTGTGAAAAGAGTGCAAA
CCCGGTCTCTCTCTGTGTGTCTCCGCACCAGTGCATGTGTC
>chr6B_1
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGCTGCATGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAATGACGGAAGGGTGG-------AGAGAAGAGGCCATCGATCCATGTCCCTGTTTAGCTTTACACATACA
CAAGGTGCGTGTTCTTTCTCCGAAAAGCTTATTACTCCATGATCAAGACTCTCAATTTGCACTACTCGACTAATTAGGCA
ATGCCGATGATTGACAGTGGTATG------------ATCAGTTCGTGGTACATACACGTAGTACGTCTTAACAAGGCTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTGGAATAACATCAAATCACAACCTCAAACGAAACAAGTGATTTTGTCT
ATTTCCTGGACGTTGCTGGATCGGTCAGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACCG
AACAGTCCTGCAAGGCAGCATGGGGCACGTGGCTAGTGGTGGGTGGTCATTTAAGTAGGGCCCAACGAGCTGCCTCTCCA
CCTGTGGGCCCCACAAGCCGATGACCGTGGGGCCGGGTAGGCCCGGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCT-ACCCCGTTAGAGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGAGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCCCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCAGCTCGACGTCAGCGAGGGCCGCCCTTCGCTCA
CCGGCCAACCGCCCGGCACCTTTTGAGCGTACACACTGCGAGGCTTTGTT----AGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTAGCTCATCCCGGCCGGCCAGCGACGTAGCAGCGGCTAGGAAGAAGATGTCGAGCAGAAGGT
CGTCGCGCGGCTCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCTTACCACCCAAACACGGATGCACACGCAC----ATTACTCCACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACGGGGGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTCCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGATCGTACTACGGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCGGCTGCGCTAT
GGGTCTCT---CCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTA---TCTCTTTCCTGCTCCCTTTCTGCCTAGATCTGATCGTGTAGATCAAAAAATGTACTACGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTCTCGATCGTCTCCTCCGTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATCG
ACAACCGACCGACCACTACTACGGTACTACTACTACCTA---GAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACG---TACTACGAGATCAAATTAATACTAGACTGG-------------------------
---------TGTATGGTATTAAGATAATATGCAAATGATGCCGGGCTTTCATGGTTGCTTCCTCTA-TGCCCTCTCGCCC
TCGATCGGCCCTAT----CCGTACGTACGCACGTGACGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTACG
CTATACTATTTAT--GCTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCACTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGATGCTACGACCAGTGACTCTCCTTGTGCTACGGAAACGGCACGGCGTTATGTGAAAAGAGTGCAAA
CCCGGTCTCTCTATGTGTGTCTCCACACCAGTGCATGTGTC
>chr6A_1
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGCTGCACGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAAGGACAGATGGGTGAAGGCTGAAGAGAAGAGGTCATGGATCCATGTCCCTGTTTAATTAGCTTTACA--
-AAGGTGCGTGTTCTTTCTCCGAACAGCTTATTACTCCATGACCAAAACTCTCAATTTGCACTAGCCGACTAATTAGGCA
ATGCCGATGATTGACAGGGGTTCGATTCGTCCACACATCAGTTCGTGGTACATACACGTACG----CTTAACGAGACTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTCGGATAACATCAAATCACAACCTCAAACGCAACAAATGATCTTGTCG
ATTTCCTGGACGTTGCTGCATCGGTCGGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACTG
AACAGTCCTGCAAGGC-GCATGGGGCACGTGGCCAGTGGTGGGTGGTCATTCAAGTGGGGCCCAACGAGCTGCCTCTCCG
CCTGTGGGCTCCACGCGCCGATGACAGTGGGCTC----------GGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCTCACCCCGTTAGCGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGGGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCGCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCGGCTCGACGTCAGCGAGGGCCTCCCCGCGCTCA
CCGGCCAACTGCCCGGCACCTTTTGAGCGTACACACTGTGTGGCTTTGTTAGCTAGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTAGCTCATCCCGGCCGGCCAGCGACGCAGCAGCGGCTAGGAAGACGATGTCGAGCAGAAGGT
CGTCGCGCGGCGCCATCTCCGAGGAGGAGATCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCCCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTAGCTTAAGCTTACCACCACAACAGCGATACACACGTACGCACATTACTCCACCG
CTTGCCAGCTAGCTGGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCAGGAAATAACGGGCGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCCTCCTCC
GCTCGTGATCGTACTACAGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCGGCGGCGACAT
GGGTCTCT---CCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTACCGTCTCTTTTCTGCTCCCTTTCTGCCTAGATC-----GTGTAGATCGAAAAATGTACTACGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTCTCGATCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CTTCTGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATAG
ACAACCGACCGACCACTACTACGGTACTACTACTACTACCTGGAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACGTACTACTACGAGATCAAATTAATACTAGACTGGAGTGTACTGT---------------
TCATTTTTATGTACGGTATTAAGGA---ATGCAAATGATGCCGGGCTCTCATGGTTGCTTCCTCTA-TGCCCTCTCGCCC
TCGATCGGCCCTATATATCCGTACGCACGCACGTGAAGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTACG
CTATGCTATTTATATACTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCACTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGACGCTACGACCAGTGACTCTCCTTGTGCTACGGAAATGGCACGGCGTTGTGTGAAAAGAGTGCAAA
CCCGGTCTCTCTCTGTGTGTCTCCGCACCAGTGCATGTGTC
>SNPs
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------S-----------
-------S-----S------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
--------S-------------------------S--S-----S------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S---S--------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S------------------------------------------------------S----------
--------SSS---------------------------------------------------------------------
------SS---------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-----------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------SSSSSSSSSSSSSSS
--S--------------------------------------------------S------------S-------------
------------------------------------------------------------------------------S-
---------------------------------------------------------------S----------------
----------------------------------S---------------------------------------------
-----------------------------------------
>forward_387
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCACAACCTCAAACGCAACG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>reverse_1846
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TGTCTGCCTCTTCCCCTCTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
