>input_sequence_81286
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGGA
GACCGTCGTGAAGAAACCGGAGCGCCACTTCGTGCTGGTCCACGGCCTCTGCCACGGCGCGTGGTGCTGGTACAGGCTGG
CCACCATCCTGCGCTCCGCCGGCCACCGCGTCACGGCGCCCGACCTTGCCGCGTGCGGCGCCAGCCCGGTGCGCGTCGAC
GAGGTGCGCTCGTTCGCCGAGTACAGCCGGCCGCTAACCGACGCCGTGGCCGCGGTGCCGCCGGGCGAGAAAGTGGTGCT
CGTCGGCCACAGCTACGGCGGCTACAGCCTCGCGCTGGCCATGGAGGCGCACCCGGACAAGGTGGCTGTCGCCGTCTTCG
TCGCCGCGGCCATGCCGGCCGCCGGCTGCCCCATGTCACATCTACTCTCGCAGGTACCGACTGAACTTCTAGTACTGACG
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr3A_1_TraesCS3A01G455100
ACAAAATCTGGACGACGGCGTCTCAGTTATGCAGACAAGAGCAGGATGCTTAATTGCTTTTTTTGGGCCGGTTGCTTTAG
TTTTAGTGGGATCTTTCTCTTCCGGCCTGCGTGCCGTGTACTGGCGAGGGAGCCATGTACTTGACTTTCTTCTCTGTCGT
CTCGCCCGTCGTTAGGGCTTGGGTGTGTGTGATACATATCTGTGTTTGTGGTTGCTACATGCCTTACGGCTTTATTTATA
AAGTCGGGCGCATGCCTTTTCTCAAACAAAAAAATGCACGTTACTCTCTAGTTGAGATAGTAAGCTCCCTAGAATTGAAG
CTCTCTGATGTGTCAATAGTTATGGTAGAAAAAAGGGATACTAAATCTTATGTTCCTAGTTGTGCCCCATTCGGTTGTTT
TGTCCCTATTTTTCGAAAACACTGAGGCCTCCTTTGGTTTGAAGGAATTTTGTAGGATTTTCATAGGATAGGATTTCTAT
AGGAAAAATTCCTTCAGAGCTCTTTGGTTTGTAGGAATGAAATCCTATTCCTATGGAGGAATTCTTTCTATCCTTCACAT
TTCATAGGAAAATAAATATTAGTCTAGACTCAATGGAAAAAATCCTATGGTGTGAATCAAAGGGCATCTCCTTTTCTATT
CCTATGCATAGGATTTGAGATGCATGTCATCTCATTTCCTATGACTTTCCTATTCTTATGACTTTTCAATCCTATGAATC
AAAGGAGGCCTCACTTTTGTTCAAGCCACATCTGCTCCATTTATGTGTCAATGATCAAGCCGGCTCCAGTAAGGGAGCGG
CGACAACTGTGCGTCGGCGGTTCAT--TGACAGCGATAGTGGTCGTTCGGTGATCTTGCAATCTCTATGTGATTA-TATT
ATGTTTGATATGCTTTGTACTTCCGGTGAACTTTTTAATACTATATGTCGATCATTTTTTGAAAGAAAAAA-CATGTTGC
A-CGACGTATATCTTACCGTTCTATGCACAAGTGGA------------------------------GTTCCACAGATGGA
GACCGTCGTGAAGAAACCGGAGCGCCACTTCGTGCTGGTCCACGGCCTCTGCCACGGCGCGTGGTGCTGGTACAGGCTGG
CCACCATCCTGCGCTCCGCCGGCCACCGCGTCACGGCGCCCGACCTTGCCGCGTGCGGCGCCAGCCCGGTGCGCGTCGAC
GAGGTGCGCTCGTTCGCCGAGTACAGCCGGCCGCTAACCGACGCCGTGGCCGCGGTGCCGCCGGGCGAGAAAGTGGTGCT
CGTCGGCCACAGCTACGGCGGCTACAGCCTCGCGCTGGCCATGGAGGCGCACCCGGACAAGGTGGCTGTCGCCGTCTTCG
TCGCCGCGGCCATGCCGGCCGCCGGCTGCCCCATGTCACATCTACTCTCGCAGGTACCGACTGAACTTCTAGTACTGACG
TGATCTTCCACTCGATTGGTTAGATCCATCGATACGATCGATGCCAATCTTTTGAATCTTCTCTGCCATT---TCGTTCC
AGATCATGGAGGAAACCGCGACGGACGCCGCCACGGACAGCGTGCCCGCGGTGATCGGCGCGGCGGAAACGTTTCTCCTG
GGCCCCGAGCGCCTGTCGCGGCGGCTGTACCAGCGAAGCTCGGCCGAGGACCTGGCGCTGGCGACGGCGCTGGTGAGGCC
GGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGACCTGACCGCCGACAGGTACGGCGCGGTGAGGCGCGCGT
GCGTGGTCACCGAGGAGGACGCGACGTGGGCGGCGGAGTCGCAGCGCCGGATGGCCTCGCGTTGCCCCGGCGTGGAGGTG
GCGGCCGTCGAGGGTGCCGACCACATGCCCATGCTCTCCACGCCCCACCAGCTCGCCGCGATCCTCATGGAGATCGCCGA
CAAGCACATCTGAGCTAGCCATCAGCTCATCGTCGGTACAGGCTGCCGTTTGCCGTTCGCCGGCG---------------
---------------ACAGCTGAAGAAGCAGAGCATCTCGCTGTCATATGGACTAGCAGTGCATTATTCCAAAGCCTTGT
CACAATCAAAAA--TACTTTTCGTACAGCACAACCACCACTCGTACAAAAGTGGAGAAATGGACGTGATCATGTGGCGTG
GACTACCACTGCACTTGTCCA----------------------GGGGATTTGTACCAGCGAGAGAGAGCTCGCCGGCCCG
TGAACCGAGAGG----CCGATGGAGAGCGCGGCCGGCGGGGAGAG------GCGGGGGCACCGGTTCGTGCTCGTGCACG
GCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCGCGGCCCTGCGGTCCGCCGGCCACCGCGTCGACGCGCTCGAC
ATGGCCGCGTGCGGCGCCAGGCCGGGGCGCGCCGAGGAGGTGGGCTCGTTCGAGGAGTACAGCCGGCCGCTGCTGGACTT
GCTGGCGGCCCTGTCGCCGGGGGAGAAGGC
>chr3D_775
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TCAAGCCAGCTCCAGTAAGGGAGCGG
CTACAGCTGCGCGTCGGCGGCTCATTCTGACGGCCATAGTGGTCGTTCGGTGATTTCGGAATCTCGATATAATGTTTATT
ATGTTTGAGGTGCTTTGTACTTCCCGTGAACTTTTTAATACTATATCTTGATCATTTTTTAAAAGAAAAAAACATGTTGC
ACCGACGTATATCTTACCGTTCTATGCACAAGTGGAGGTTCCACCAGTCGCAAAAAAAAAGTGGAGGTTCCACAGATGGA
GACCGTCGTGAAGAAACCGGAGAGCCACTTCGTGCTGGTCCACGGCCTCTGCCACGGCGCGTGGTGCTGGTACAGGCTGG
CCACCATCCTGCGTTCCGCCGGCCACCGCGTCACGGCGCCCGACCTGGCCGCGTGCGGCGCCAGCCCGGTGCGCGTCGAC
GAGGTGCGCTCGTTCGCCGAGTACAGCCGGCCACTGACCGACGCCGTCGACGCGGTCCCGCCAGGCGAGAAGGTGGTCCT
CGTCGGCCACAGCTACGGCGGCTACAGCCTTGCGCTGGCCATGCACGCTCACCCGGACAAGGTGGACGTCGCCGTCTTCG
TCGCCGCGGCCATGCCGGCCGCCGGGTGCCCCATGTCACATCTACTGTCGCAGGCACTGGCTGAAC---TACTACTGATC
TGATCTTCCACTCAATTGCTGTGATCCATCCACACGATCGGTGACAATCTTT-GAATCTTCTTTGCCATT---TCCTTCC
AGATCATGGAGGAAACGGCGCCGGACGCCGCCACGGACAGCGTGCCCGCGGTGACCGGCGGGGCGGAAACGTTTCTCCTG
GGCCCCGAACGCCTGTCGCGGCGTCTGTACCAGCGAAGCCCGCCCGAGGACCTGGCGCTGGCGACGGCGCTGGTGAGGCC
GGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGTCCTGACCGCCGACAGGTACGGCGCGGTGAGGCGCGCGT
GCGTGGTCACCGAGGAGGACGCGACGTGGGCGGCGGAGTCGCAGCGCCGGATGGCGTCGCGGTGCCCCGGCGTGGAGGTG
GTGGCCGTCGAGGGGGCCGACCACATGCCCATGTTCTCCACGCCCCACCGACTCGCCGCGATCCTCATGGAGATCGCCGA
CAAGTACATCTGAGCTAGCCATCAACTCATCGCCAGTACAGGCTGCCGTTCGCCGGAAACAGCGA---------------
---------------------AAAAAAGCAGAGCATCTCGCTGTCATAAG---------------------TAA------
-ACAATCCAAAGTGTACTTTTCATTCAGCACAACCACCACTCAGA-AAAAGTGGAGAAATTGAGGTGATCATGTCGCGTG
GACTACCACCACACTTGTCCACCTTGTGTCGCAATCCAGCCCAGGGGATTTGTACCAGCAAGAAAGAGCTCGGCGGACCG
TGAACGGAGGGACAAACCGATGGAGAGCGCCGGCGCCGGCGAGGAGCGGCCGCGGGGCCACCGGTTCGTGCTCGTGCACG
GCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCACGGCCCTGCGGTCGGCCGGCCACCGCGTCGACGCGCTCGAC
ATGGCCGCGTGCGGCGCCAGGCCGGGGCGCGCCGAGGAGGTGGGCTCGTTCCAGGAGTACAGCCGGCCGCTGCTGGACGC
GCTGGGGGCGCTGCCGCCGGGGGAGAAGGC
>chr3B_775
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TCAAGCCGGCTTTA-TATGGGAGCGG
CCATAGCTACGCATCGGCGGCTCATTCTGACGGCGGCAGTGGTTGTTCGCTAATCTCAGAATCTTAATGTAATTTTTATT
ATGTTTGAGGTGCTTTATACTACTGATGAACTTTTTTAATATTGAA--------------AAGAGAAAAAA-GATGCTGC
A-CG-CGTATATCTTACTGTTCTATACACAAGCGGAGGTTCCGG-----------------------------AGATGGA
GAGCGTCGTGAAGAAACCGGAGCGGCACTTCGTGCTGGTCCACGGCCTCTGCCACGGCGCGTGGTGCTGGTACAGGCTGG
CCACCATCCTGCGCTCCGCCGGCCACCGCGTCACGGCGCCCGACCTGGCCGCGTGCGGCGCCAGCCCGGTGCGCGTCGAC
GAGGTGCGCTCCTTCGCCGAGTACAGCCGGCCCCTGACCGACGCCGTGGCCGCGGTGCCGCCCGGCGAGAAGGTGGTCCT
CGTCGGCCACAGCTACGGCGGCTACAGCCTCGCGCTGGCCATGGAGGCGCACCCGGACAAGGTGGCCGTCGCCGTCTTCG
TCGCCGCGGCCATGCCGGCCGCCGGGTGCCCCATGTCACATCTACTCTCGCAGGCA----CTGAAC---TACTACTGATC
TGATCTA----------------------CCATAGGATTGATGACAACCTTTTGAATCATTTCTGCTGATCTCTCGTTCC
AGATCATGGAGGAAACGGCGACGGACTCCGCCACGGACAGCGTACCGGCCGTGACCGGCGGGGCGGAAACGTTTCTCCTG
GGCCCCGAGCGCCTGTCACGGCGTCTGTACCAGCGAAGCTCGGCCGAGGACCTGGCGCTGGCGACGGCGCTGGTGAGGCC
GGCGCGGTGGTTCCTCGACGACGCGGCGATGACGGAGAGCGTCCTGACCGCCGACAGGTACGGCGCGGTGAGGCGCGCGT
GCGTGGTCACCGAGGAGGACGCGACTTGGGCGGCGGAGTCGCAGCGCCGGATGGCGTCGCGGTGTCCCGGCGTGGAGGTG
GCGGCCGTCGAGGGTGCCGACCACATGCCCATGTTCTCCACGCCCCACCGGCTCGCGGCGGTCCTCATGGAGATCGCCGA
CAAGTACATCTGAGCTAGACATCAGCTCATCGCCGGTACTGGCTGCCGTTTGCCATTGTTCGGCACTGATTCTTGCGCCG
AAAGGAGAATCATCAACAGCTAAAAAAGCAGAGCATCTCGCTATCTTATGAACTGTACCAATAATAATTAATAA------
-ACAATCGAAAA--TACTTTTCATACATCTCAACCACCACTCGTAGAAAAGTGGAGAAATGGACGTGATCATGTCGCGTG
GACTAAACTAGTCCAAGA--------------------------------------------AAAGAGCTCGGCGGAC--
-------------AAAACGATGGAGAGCGCAGCCGGCGGGGAGCTACGGC------GGCACCGGTTCGTGCTCGTGCACG
GCGTCTGCCACGGCGCGTGGAGCTGGTACAGGGTGGCCACGGCCCTGCGGTCCGCTGGTCACCGCGTCGACGCGCTCGAC
ATGGCCGCGTGCGGCGCCAGGCCCGGGCGCGCGGAGGAGGTGGGCTCGTTCGAGGAGTACAGCCGGCCGCTGCTGGACGC
GCTGGCGGCGCTGCCGACGGGGGAGAAGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-S---S---S----------S----------S------------------------S-S------S----S---S-----
--------SS------------------------------------S-S-----------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------S--S--------------------------S--------S-----S--
------------------------------------------------------------------S-------------
-------------------------S----------------------------S--S-S------SSS--S------SS
-------------S----S-SS--------S------------S------------------------------------
----------------S-------------------------------------S-----S-------------------
-----------------------S--------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------S-----S------------------
---------------------------------S---------------S------------------------------
----S---------------------------S------------------------SS-----S---------------
---------------------S--S-------------------------S---SSSSSSSS-S--S-SS-S-SSSSSSS
S------S--------------S----------------------S----------------------------S-----
---------S-------------------------------------------------S---S--------S---S---
-----S---S-S------------------S------------SS-----------------------------------
--------------------------------------S-----------------------------------------
------------------------------------------------------------------------------SS
---------S---S----------------
>forward_432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCGAAAACACTGAGGCCTCC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_2170
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGCACTTGTCCAGGGGATTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
