>input_sequence_81282
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-----------------ATGAAGGCGTCCTACTTCCTGGTCGTGCTTCTGCTCGCCGCCGCCACGGGGAGCAGGCTCTCG
CTCGCCGCCCGCGAGGGCACCACCCTGGGCGGCGAGCTC------------GGCGCGCTCATAGCCAAGGCCGGCAGCTT
CCTCACGTCGGCGGGCCGCGCGGGAGCGGACGGCTGGCACTCCGCCGCGGCCGCGGAGGTGGACGCCTCGGCGAGGAAGG
GGCACGGCCATCCGGCGGGGGCGAAGAAGCGGCTGAAGAAGTCTTCCGTGAACTGCATCCCCGCCGACATGTGCCGGAGG
AAGAAGGTGCTGTGCGGCAAGCGGTGCTACAAGACGTCGCACGCCG---G---CGCCGGCCTCGACCACGTCCCCTCCAG
CCGGTGCGTCGTCAGGTGCAAGAAGTGCGTGCCCACCTGCTAG-------------------------------------
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>chr2D_1_TraesCS2D01G370500
TCATATAGACTGAAGTGTTGCGAATATGAGTATTAC---GCCGTACATGTAGCATAGAGCATAGCGCACACATCATTTTC
AGTGGTCACCGCAAATTTGGTTTTAATTACATCGTTTTCATTTGCAAAGTTTTCCCTCCCTGAGGAAGAGTTTCCTTCTA
GAGTTGGACTCTTTATCATGTACGTACCAACTTTCTATATATTTATTAAATTGCAATTATACTTCTTCCCCCAGTGCTCG
TACGTGTG--CTTGACTTGCTACAGTGAAGAAGGAACTCTTCGACACCAAGCATGGCTGAAAGCCCTTCGACACC-GGGG
TCATGGGATACAGTTCAATGTCGTCCTAATAAATGACAATGTTGTGATCTTTTAAATCAGTCAATCAATCAATCAATCAA
ATATTTTATTTTATCATCTTCATAGTTTAGTTTC--------CCTCGAGCTTAAGAGACCATAACAC--CAGACACCTGG
CTCGGGATAGAAACAAGTCCTTGCAATCAAACTACGCAGACACAATCACAGCGGCGTCCTGAGAAGCCACTGTCAGTACA
CCTGTCTTATGGTG---CTGTGGAAGGAGAGCTACTGCTCATGCAA-----GTGACCTGACCATTA-----------TCG
TGCCCGACTGAAGCACCATCAGGCATCCATCCCCGAAATTTTGCAAGGAAGGATGCCATCTGAAACCCACAAATCAT---
---GGCACCCCCATGGCTGTTTCGTCCACGGCTCCTCACACGCAGTGTCACGCATCGCGCCCCACCCCG-TACGTTCATC
GCCATGTTGACACGCATTTGATGTTCACCGCAGTTAGGTAGCCCATGCAGATGGCTCCCATTTCCATGCCAAAGTCACTT
CCATGCCATGCATCC-TTGCTGATGATGACTTGATCGCCTATATAAGAGAACAGTGTTACCATGACCTCACCTGCACCGG
TAACT----AGTGG-CAAGTGGTACTGT------AACATCACATCACAGG---GTGACGGTGTTCGGCCGAGCTGGTCGA
TCGACACGGCGGCCAGCATGAAGGCGTCCTACTTCCTGGTCGTGCTTCTGCTCGCCGCCGCCACGGGGAGCAGGCTCTCG
CTCGCCGCCCGCGAGGGCACCACCCTGGGCGGCGAGCTC------------GGCGCGCTCATAGCCAAGGCCGGCAGCTT
CCTCACGTCGGCGGGCCGCGCGGGAGCGGACGGCTGGCACTCCGCCGCGGCCGCGGAGGTGGACGCCTCGGCGAGGAAGG
GGCACGGCCATCCGGCGGGGGCGAAGAAGCGGCTGAAGAAGTCTTCCGTGAACTGCATCCCCGCCGACATGTGCCGGAGG
AAGAAGGTGCTGTGCGGCAAGCGGTGCTACAAGACGTCGCACGCCG---G---CGCCGGCCTCGACCACGTCCCCTCCAG
CCGGTGCGTCGTCAGGTGCAAGAAGTGCGTGCCCACCTGCTAGATCGTTCGTTGGTTGCTCCTTCCCTTCCATCTTCTGA
GTTCCGTGTCGTGTCGTGTCGTGGTGCTCGATCCGTGCATGTTAGT-----TACATTTGCTTTTCCCTCCATAGGGTTTC
ATTCATGCATCAGTTGAATAAGCTGGCAGGCTTCCCGCCATCAT----GCATGCAGCATAGGTAGTGGACATACGGGTTC
TACTCTAAAAGAAGTGTACCACGGTTGTGTGCTAAGTTTGAACGTGATCTCATCTCGTCTCATCTTCTCCCCTGGCGATG
AATAGTTTCCTACACGTGACAAATGCCGACTCTACGTAGTGGAGAAACGAAACCGTCGG-----GCACTGCGATCGTTGT
GTGCAGCTTTCTGAGACGCAAAAGTCATGTGGTCATGCGGTTGTAGGGCATGGCGACTCCCGCGTCATGACGGCTGTGGG
GATGAGGGAGACCTCAACCTGAACGAACCAACTGTTCTTCTAGTGTACTACACGGATCATCGTCACGTGTTGTGGA----
TGGATGGATGGTGGTGCCACTAGCACTCCTTTCCAGTTCGACCCG--TTTTGCTATTCTGGCACCGTTTTCCTCGCTGGA
TGCCACTGTGC--CAGCAACTCGCTCGGCCCATGACCATGCATGGTTCATGCA----CATGAGATGAAAACCCTTCGTGG
CTCCAAGACAGAGCCCCTTTTGCTGTTACTACCGTCGTTGTACCACAATAACTGTACGTACATGTGTTTCCCGTC-AAAA
GATAGGACTGTATACGTATCTGGTTGCAGTTGAGGGTTTGAGCTTTGAATGCCGTTCGTTTTCCAAGTGGCACGCAGGCC
GCAGACAGCCTGAATCGGTGGAT-------ATAATACTCCGGTACCATGAAACTTTCTTCTTTCGTCGCTGCTCGATCAA
ATCCTTCGTGTGAACGTCTCTCGCCCTGAACCTGAAGTCTGCACCGTGGACATCAGAAATATCGTTCATGCATCCTACTA
GTAGTAGTAGTACCACTGTACTAGCTAGCTATCGTGC
>chr2A_9
--------ACTGAAGTGTTGCAGATATGAGTATTATTATGCCTTACATGTAGCATGAAGCACAGCACACACATCATTTTC
ATTGGTCACCGCAAATTTGGTTTTAATTACATGGTTCTCGTTTGCAAAGTTTTCCCTCC-TGAGGAAGAGTTTCCTTCTA
GAGTTGGACTCTTCATCATG----TACCAACATTTTATATATTTG---AATTGCAATTATGCTTCTTCCCCCGGTGCTCG
TATGTGTGAACTTGACTTGCTACAGTGAAGGAGGAACTCTTCGACACCAAGCATGGCTGAAAGCTCTTCGACACCGGGGG
TCATGGGATACAGTTCAATGTCGTCCTAATAAATGACAATGTTGTGATCTTTTAAATCAGTCAATCAATCAAGCGATCAA
ATATTTTCTTTTATCATCTTCATAGTTTAGTTCTCCAGTTCTCCTCGAGCTTAAGAGACCATAATACCACAGACACCTGG
CTCGGGATAGAAACAGTTCCTTGCAATCAAACTACGCAGACATAATCAGGGCGGCATCATGAGAAGCCACTGTCAGTACA
CCTGTCTTTTGGTAGTACTGTGGAAGAAGAGCTACTGCTCATGCAATGCAAGTGACCTGACCATTATCGTGCCATTGTCG
TGCCCAAGTGAAGCACCATTAAGCATTCATCCCTGATATTTTGCTAGGAAGGATGCCATCTGAAACCCACAAATCGT---
---GGCACCCCCATGGCTGTTTCGTCCACGGCTCCTCACACGCAGTGTCACGCTTCACGCCCCACCCCG-TACGTTCATC
GCCATGTTGACACGCATTTGATGTTCACAGTAGTTAGGTAGCCCATGCAGATGGCTCCCGTTTCCATGCCATGCC-----
-----CCATGCATTACC-------GATGACTTGACTTCCTATATAAGAGAACAGTGTTACCATGACCTCAACTGCACCGG
TAAGTAACAAGTGG-CGAGTGATACTGT------AACATCACATCACAGG---GTGACGGTGTTCGGCCGAGCTGGTCGA
TCGACACGGCGGCCAGCATGAAGGCGTCCTGCTTCCTGGTGGTGCTTCTGCTCGCCGTGGCCACGGGGAGCAGGCTCTCG
CTCGCCGCCCGCGAGGGCAGCACC------------CTG------------GGCGAGCTCATCGCCAAGGCCGGCAGCTT
CCTCACGTCGGCGGGCCGCGCGGGGGCGGACGGCTGGCGGTCCGCCGCCGCCGCGGAGGTGGACGCCTCGGCGAAGAAGG
GGCACGGCCATCCGGCGGGGGCGAAGAAGCGGCTGAAGAAGTCTTCCGTGAACTGCATCCCCGCCGACATGTGCCGGAGG
AAGAAGGTGCTGTGCGGCAAGCGGTGCTACAAGACGTCGCACGCCGCCGCCGCCGCCGGCCTCAGCCACGTCCCCCCCAC
CCGGTGCGTCGTCAGGTGCAAGAAGTGCGTGCCCACCTGCTAGACCGTTCGTTGGCTGTTCCTTCCCTTCCCTCTTCTGG
GTTCCGTGTCGTGTCGTGTCGTCGTGGTCGATCCATGCATGTTAGCTACAGTACATTTGCTTTCCCTTCCATAGGGTT--
---CATGCACCGGTTGAATAAGCAGGCAAGCTTCCCGCCATCATGGTCGCATGCAGTGTAGGTAGTGGATGGGTTCTACG
TACTCTAAAAGAAATGTACCACGGTTGTGTGCCAAGTTTGAACGTGATCTCGTCTCATCTCATCTTCTCCCCTGTCGATG
AATAGTTTCCCGCACGTGAC-AATGCCGACTGTACGTAGCGGAGAAACGAAACCGTCGAGCACTGCACTGCGATCGTTGT
GTGCAGCTTTCCGAGACGCAAAAGTCATGTGGTCATGCGGTTGTAGGGCATGACGACTCCCGCGTCATGACGGCTGTGGG
GATGAGGGAGACCTCAACCTGAACGAACCAACTGTTCTTCTAGTGTACTACACGGATTATCGTCACGTGTTGTGGATGGA
TGGATGGATGGTGGTGCCACTAGCACTCCTTTCCAGTTCGATCCG--TT--GCTGTTCTGGCACCGTTTTCCTCGCTGGA
TGCCACTGTGCGCCAGCAACTCGCTCGGCCCATGACCATGCACGGTTCATGCATGCACATAAGATGAAAACCCT-CGTGG
CTCCAAGACAAAGCCCCTTTTGCTGTTACTACCGTCGTTGTACCACAATGACTGTACGTACCTGTGTTTCCCGTCAAAAA
AATAGAATTGTATACGTATCTGTTTGCAGTTGAGGGTCTGGGCTTTGAATGCCGTTCGTTTTCCAAGTGGCACGCAGGCC
GCGGACAGCCTGAATCGGTGGAT-------ATAACACTCCG-TGCCATGAAACTTTCCTCTTTCGTCGCTGCTCGATCAA
ATCCTTCATGTGAACGTCTCTCGCCCTGAACCTGAAGTCTGCACCGTGGACATCAGAAATGTCGTTCATGCATCCTACTA
GTAGTAGTACCACTGTAGTACTAGCTA----------
>chr2B_12
-----------GAAGTGTTGCGAATATGAGTATTATTATGCCTTACATGTAGCATAGAGCATAGCACACACATCATTTGC
ATTGGTCACCGCAAATTTGGTTTTAATTACATCGTTTTCGTTTGCAAAGTTTTCCCTCCCTAAGGAAGAATTTCCTTTTA
GAGTTGGACTCTTCATCATG----TACCAACTTTTTATATATTTA---AATTGCAATTATACCTCTCCCCCCTGTGCTCG
TATGTGTGAACTTGACTTGCTACAGTGAAGAAGGAACTCTTCGACACCAAGCATGGCTGAAAGCTCTTCGACACC-GGGG
TCATGGGATACAGTTCAATGTCGTCCTAATAAATGACAATGTTGTGATCTTTTAAATCAGTCAATCAAGCAAGCAATCAA
ATATTTTATTTTATCATCTTCATAGTTTAGTTTC--------CCTCGAGCTTAAGAG-----------------------
----------------GTCCTTGCAATCAAACTACACAGACACAATCAGAGCGGCATCCTGAGACGCCACTGTCAGTACA
CCTGTCTTTTGGTG---CCGTGGAAGGAGAGCTACTGCTCATGCAA-----GTGACCTGATCATTATCGTGTCATTGTCG
TGCCCAACTGAAGCACCATCAGGCATCCATCCCCGAAATTTTGCAAGGAAGGATGCCATCTGAAACCCACAAATCATGGC
AATGGCACCTCCTTTGCTGTTTCGTCCACGGCTTCTCACACGCACAGTCACGCATCGCGCCCCGCCCCCTTACGTTCGTC
GCCATGTTGACACGCATTTGATGTTCACCGCAGTTAGGTAGCCCATGCAGATGGTTTCCGTTTCCATGTCATGCC-----
-----CCATGCATCCTTTGCTGATGATGACTTGACCGCCTATATAAGAGAACAGTGTTACCGTGACCTCACCTGCACCGG
TAAGTAACTAGTGGGCAAGTGGTACGTACTGTAAAACATCACATCGTCGCACCGTGACGGTGTTCGGCCGAGCTGGTCGA
TCGACACGGCAGCCAGCATGAAGGCGTCCTGCTTCCTGGTCGTGCTTCTACTCGCCATCGCCACGGAGAGCAGGCTCTCG
CTCGCCGCCCGCGAGGGCAGCACC------------CTGGGCGGCGAGCTCGGCGAGCTCATCGCCAAGGCGGGCAGCTT
CCTCACATCGGCTGGCCGCGCGGGGGCGGACGGCTGGCACTCCGCCGCGGCCGCGGAGGTGGACGCCTCGGCGAAGAAGG
GGCACGGCCATCCGGCGGGGCCGAGAAAGCGTCTGAAGAAGTCGTCGGTGAACTGCATCCCCGCCGACATGTGCCGGAGG
AAGAAGGTGCTGTGCGGCAAGCGGTGCTACAAGACGTCGCACGCCGCCGG---CGCCGGCCTCGACCACGTCCCCTCCAA
CCGGTGCGTCGTCAGGTGCAAGAAGTGCGTGCCCACCTGCTAGATCGATCGTTGGTTGCTCCTACCCTTCCCTCTTCTGG
GTTACGTGTCGTGTCGTGTCGTGGTGCTCGATCCGTGCATGCTAGC-----TACATTTGCTTTTCCTTCCATAGGGTT--
---CGTGCATCAGTTGAATAAGCAGGCGGGCTTCCCGCCATCAT----GCATGCAGTATAGGTAGTGGATGGGTTCTAC-
---TCTAAAAGAAATGTACCACGGTTGTGTGCTAAGTTTGAACGTGATCTCATC-----TCATCTTCTCCCCTGGTGATG
AGTAGTTTCCTGCACGTGAT-AATGCCGACTCTACGTAGTGGAGAAACGAAACCGTGGG-----GCAATGCGATCGTTGT
GTGCAGCTTTCCGAGACGCAAAAGTCATGTGGTCATGCGGTTGTAGGGCATGGCGACTCCCGCGTCATGACGGCTGTGGG
GATGAGGGAGACCTCAACCTGAACGAACCAACTGTTGTTCTAGTGTACTATACGAATTATCGTCACGTGTTGTTTG----
TGGACGGATGGTGGTGCCACTAGCACTCCTTTCCAGTTCGACCCGTTTT--GCTACTCTGGCACCGTTTTCCTCGCTGGA
TGCCACTGT--GCCAGCAACTCGCTCGGCCCATGACCATGCATGGTTCATGCA----CATGAGATGAAAA-CCTACGTGG
CTCCAAGACAAAGCCCGTTTTGCTGTTACT---GTCGCTGTACCATAATAACTGTACGTAA--------CCCCTCAAAAA
AATCACTGCG----CGTATCTGGTTGCAGTTGAGGGTTTGAGCTTTGAATGCCGATCGTTTTCCAAGTGGCACGCAGGCC
GCAGACAGCCGGAATCCATGGATCGTTTTCATAATACTCC-GTACCATGAAACTTTCTTCTTTCGTCGCTGCTCGATCAA
ATCCTTCATGTGAACGTCTCTCGCCCTGAACCTGAAGTCTGAACCATGGACATCAGAAATATCGTTCATGCATCCTACTA
GTAGTAGTACCACTGTG---CTAGCTAGCTATCGTGC
>SNPs
SSSSSSSS---------------------------S------S----------------------S--------------
-S-------------------------------------S----------------------------------------
-------------S------SSSS----------S----------SSS------------------------S-------
--S-------------------------------------------------------------S---------------
------------------------------------------------------------------------S-------
----------------------------------------------------------------S---------------
---------------S--------------------------------S------S------------------------
--------S-----------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S-----------SSSSSSSSS
SSSSS-----------------------------S---------------------------------------------
---S----------------------------------------------------------------------------
------------------------------S--------------------------S----------------------
-------------------S----SSSSSSSSSSSS--S----------------S------S-----------------
------------------------S-------------------------------------------------S-----
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-------------------------------------------------------------------------------S
-----------------------------------------------------------------------S-------S
---------------------------------------------S--------------------S-----------SS
SSS--------------------S--------------------------------S------------SSSSSSSSSSS
-------------S------------------------------------------S-----------------------
-----------S--------S-----------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------------------------------------------SS-----------------------------
--------------------------------------------------------------------------S-----
----------S--------------------------------------------------S------------------
S----S-S------------------------------------------------------------------------
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-------S------------------------------------------------------------------------
---------SS--SSSS--------------------
>forward_646
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------------------------------------------------------------------CCTGACCATTATCG
TGCCCG--------------------------------------------------------------------------
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>reverse_1737
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--------------------------------------------------------GTCTCATCTTCTCCCCTGGC----
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