>input_sequence_81273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATGCCCTCCTCTACCCAACACA
ACACCAGCTCGACGCCTCGACCTCGCTCCCGCACCGC-CATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCAT
CAGGACGCCGTCCTCGTCGGAGGAGGCGGCGGCGAAGCGTCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGA
TCCGCGCCGGCGAGGCCACGCGGCGGCTGCCCTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTC
TGCAAGCGGACCTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGCGGCGGAAGGCAGGCCGCGGCCAAGCACGC
CGGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr2B_1_TraesCS2B01G077400
TGTATGCATGTATATATGAGCGCTTGCGTCTGGGAAAGTATTAGTGCTCCCAGGCTTGGGGTGCTCCCGGTGCTCCAAAT
GTCCGAAAAACATTTTTAAAATGTTCAAAAAATTCTGCAAAAAATGCAGCACATCGACGGAACATCGATGTCTCTTGTCA
CAAAATTTCAAATCAAAATTCGAAACATTGCTCGAGATACAAAAATGACAAATTTTTGTACATAACATAAGTTGGGCTTT
AGTTTTGGCCCATTATCACAGATGTCAAATTTGTCATTTTTGTATCTCGAGCAATGTTTCGAATTTTTATTTGAAATTTT
CTGACAAGAGACATCGATGTTCCGTCGATGTGCTGCATTTTTTTCAGAAATTTTTGAACATTTTAAAAAATGTTTTTCGC
ATCGAAGCACCGGGAGCACCCTAGATCTGGGAGCAGTAGATACTTTCCCGCTTGCGTCTGTACTGTATTAAAAAAACCAT
TATTATACTTGCTCCATTGGAGTTTAGAAAAAACACGTTTTGTGCTACTTGTTTTGACTCATGTACAGGAACGTTGCCTT
ATGTTATCAGGCGAGATCAGTGTCAACTTTATGCCAAGGAA--AAATATGTGGCCCCTGCAATGGAAATGGACACAGCAA
CTAATGCTTGTCCCTAATTCAAAAAAAAAAAACTAATGCTTGTCCCTGCAACACAAAAAGAAAAACCCAACGTTATGCAT
TTCTTGATTCCTACATTGCTTTTCTCCCCTGAGAACGACATGCTCCCGGCCGCGAACGAACGAGCGAACGTACCTCCGTC
CGTCCGTCCATGTCTTGTGTGCGCACAAGATCACTTCCTTTCTCCAGGGTTTGGTGGCGATAGAGAAAATAAAGTTGAGG
CGCAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTAGGATAGTGG----------------CACCCTCAC
CAACAAAGCGTCCGCACCAGCCCAGCCACCTGACCCCCGACCTAAGGCCCCATTACATATGCCCTCCTCTACCCAACACA
ACACCAGCTCGACGCCTCGACCTCGCTCCCGCACCGC-CATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCAT
CAGGACGCCGTCCTCGTCGGAGGAGGCGGCGGCGAAGCGTCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGA
TCCGCGCCGGCGAGGCCACGCGGCGGCTGCCCTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTC
TGCAAGCGGACCTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGCGGCGGAAGGCAGGCCGCGGCCAAGCACGC
CGGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGAGAC-GACGATCAA
GGATGATGTTTCTTTTTGCTCTTCGCTCCTCGTGTTTATTTTCTCCTTTGAAATGATGGCGACGCATGACGCATGTAGCT
AGGGTTGTAGGTAGC-AAACGTTTTCGCATGCGGATCGTCGGCGAATGGGCTCCTGCAAATTTTGTATTCGAGGTTTATC
GTCGCTTTACGAATGTGGGTGTAAATAAGAAGCATGATTGGTCTTCTACTAACCTTAATTT-GGATACATATGCATGCAT
GGTGTGTGTATATATATATATGTGTGTGTATTATACTCACTGCATGGAAGGTTGGCAAAATATTAATATTTCAAACTTTA
TC--CATCGCTGTAAAGCTCTACTCCGCGACTA------------ACGCGTTGCCTTTGGAGATAAAGAAACAGAAACTT
TTGCACGTTCTTAA-TTTTAGTCCCGCCTTTTGGAGCACAAAAAAATTAG--TAGGGGTGGTTGGGCCATAACCAATTCG
ACCATACACT--AATCTTTCCTGAAAGAATTCATTTTTTGTAATGAATACTTCGGTTAACACGAAGAAAAAGAAACCGCT
TTTATGACGGGCCGAAATAGGAGAACATAGCTATGTTAGGGCATCTCCAGCCGCGCCCCCAACAGGCCCTCCCCAGGCGA
TTTTGCCGCGCCGGCGCCAAAAAAGGCCCCAGTCGCGCCCCCAGAAGCCCGTTTTTCGCCGGCTCGGGCCAAAACTGGTG
TCGGCGGACCCAGGCCGAACCCGGCACCCTGGGGGGCGCTTGGGGAGCCGGCAGAAGCGAAAAAGGCGCGTGGGCCCGCC
CTGGAAGCGCACCGAGGGCCTTTTCCCGCCGTTTCTTGACGCTTTTCCCTCGCATCTCTCCCGCTCGCTCGCTTCCCTCC
CGCCATTCTCTCCCTTTCTCCCGCCAAACCTCCTCCCGCTCGCCGCGAAGAAACACGCCATGCCGCCGAGGAAGTACGCC
ATGTCGCGCGCGACGGCAACCGCGACTGGCACCGTGGCCCAGCCGAAGC
>chr2D_521
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGTGCTCCTTGTTTTGACTCATGTACACGAACATTGCCTT
GTGTTATCAGGCGACATCGGTGTCAACTTTATGTCAAGGAAAAAAATATGCGGGCCCTGCAATGGAAATGGACACAGCAA
CTAAT----------------------------TAATGCTTGCCCCTGCAACACAAAAAACA--TAATGTTG---TGCAT
TTCTTGATTCCTACATTGCTTTTCTCCCCTGAGAGCGACATGCTCCCGGCCGTGAACGAGCGT----ACGTACCTCCGTC
CGTCCGTCCATGTCTTGTGTGTGCACAAAACCACTTGCTTTATCCAGGGTTTGGTGGTGATAAAGAAAATAAAGTTGAAG
TGTAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTCCGATAGTGGCGAGTAGCAACGCAACCACCCTCAC
CAACAAAGCGTCCGCACCAGCCCA----CCTGACCCCCGACCTAAGACCCCATTACATATGCCCTCCTCTACCCAACACA
ACACCAGCTCGAC----CGATCTCGCTCCCGCATCAC-CATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCAT
CAAGACGCCG---TCGTCGGAGGAGGCGGCGGCGAAGCAGCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGA
TCCGCGCCGGCGAGGCCACGCGGCGGCTCCCGTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTC
TGCAAGCGGACGTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGC---GGC------AGGCAGGCCGCGGCCAAGCACGC
CGGCGAGGGCGCCCTAGCCGACGACCTCGTGATCTGGTTCTCCACCATGCTCGTCCCAGGATTCTGAGAC-GA---TCAA
CGATGATGTTCCCTTTGAT----------------------------------TGATGGCCACGCATGGCACATGCAGCT
AGGGTTGTAGGTAGCAAAACGTTTTCGCATATGGATCGTCGGCGAATGGGCTCTTTCAAGTTTTGTATTCCAGGTTTATC
GTCCCTTTACGAATGTGGGTGTAAATAAGAAGCATGATCGATCTTCTACTAACCTTAATTTCGGATACATATGCGTGCTA
TAGATGTGTAT----------------------TACTCACTGCATGGAAGATTGGCAAAATATT------TCAAACAGTA
TTTTTCTCGCTGTAAAGCTC------------A------------ACGCGTTGTGTTTGGAGATAAAGAAACAGAAACTT
TTG-ACGTTCTTAATTTTTAGTCCCGCCTTTTGGAGCACAAAAAATATTAGCTAGCGGTGGTTGGGCCATGACCAATTCG
ACCATACTCT--AATCTTTCCGAAAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr2A_521
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TGTGCTACTTGTTTTGACTCATGTACACGAACATTGCCTT
GTGTTATCAGGCGATATCGGTGTCAACTTTATGTCAAGGAAAAAAATATGCGGGCCCTGCAATGGAAATGGACACAGCAA
--------------------------------CTAATGCTTGTCCCTGCAACACAAAAAAACCCTAATGCTG---TTCAT
TTCTTGATTCCTACATTGCTTTTCTCCCCTGAGAGCGACATGCTCCCGGCCGTGAACGAACGT----ACGAACCTCCGTC
CGTCCGTCCATGTCTTGTGTGTGTGCAAAATCACTTGCTTTATCCAGGGTTTGGTGGTGCTAAAGAAAATAAAGTTGAAG
TGTAGTGTAGGTGCACCCTCTCCAACGGGGATCTCCCAACACACTCGGACAGTGGCAAGTAGCGTAGCAACCACCCTCAC
CAACAAAGCGTCCGCAGCAGCCCA----CCTGACCCCCGACCTAAGACCCCATTACATATGCCCTCCTCTACCCAACACC
AT-------------CTCGATCTCACTCCCTCTCGCATCATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTCTGCAT
CAAGACGCCGTCGTCG------GAGGAGGCGGCGAAGCATCCGGCGGCCGGCGAGGAGTGCTGCGTCTGCCTCTCGAGGA
TCCGCGCCGGCGAGGCCACCAGGCGGCTCCCGTGCGAGCACGCCTTCCACCGGGACTGCGTCGACCGGTGGCTCGCGCTC
TGCAAGCGGACGTGCCCGCTCTGCCGGGTGTACGTCGCCGACGGCAACGGC------AGGCAAGCCGCGGCCAAGCACGC
CGGCGAGGGCGCCCTGGCCGACGACCTCGTCATCTGGTTCTCCACCATGCTCGTCCCAGGGTTCTGAGACAGA---TCGA
CGACGATGTTTCTTTTCGCTCTTCGCTCCTCGTGTTTTCT------------------------CATGACACATGTAGCT
AGGGCTCTAGGTAGCAAACGT------------------------------TCTTGCAAGTTTTGTATTTGAGGTTTA--
-TCCCTCTACGAATGTGGGTGTAAATAAGAAGCA-GATCGACCTTCTACTAACCTTAATTTTGGATACATATGCATGCTA
TAGATGTGTAT----------------------TACTCACTGCATGGAAGATTGGAAAAA-----ATATTTCAAACTGTA
TC--TCTCGCTGTAAAGCTC------------AGCGCCGCGACTAACGCGTCGCCTTTAGAGATAAAGAAACAGAAACTT
TTGCACGTTCCTAATTTTTAGTCCCGCCTTTTGGAGCACAAAAA-TATTAGCTAGCGGTGGTTAGCCCATGACCAATTCG
ACCATATACTCTAATCTTTCCGAAAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S----S-------
S-------------S---S--------------S----------------S--S--------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S--SSSSSSSSS-SSS-----
----------------------------------S-----------------S---------SSSSS-------------
---------------------S------S-------S----S---------------S----S---------------S-
S-S------------------------------------------S----------------------------------
------------------------SSSS------------------S---------------------------------
-------------SS-----S--------------S--------------------------------------------
--S---------S-------------------------S-----------------------------------------
----------------------------S--S------------------------------------------------
-----------S---------------------------------------SSSSSS-----------------------
-------------------------------------------------------------------------SSS----
S---------------S--------------------SS-SSSSSSSSSSSSS-------S---------S---------
------------------------------SS---------------------S-----S--------------------
---S----------------------------------S-S-------------------------------------SS
SSSS-------SSSSSSSSSSSSSSSSSSSSSS-----------------S-------------S------------S--
----SS--------------SSSSSSSSSSSS------------------------------------------------
---------------------------------------------SS-SS-----S--------------S---------
---------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_467
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCGCTTGCGTCTGTACTGTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_2259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CCTTTTCCCGCCGTTTCTTG------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
