>input_sequence_81251
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGGTGCGGAAGGCCAAGGTCGAGTTC
GACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGGAGCACCT
GGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGGATCGAGGGCG
TCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGGTGGGGCAAGGACCAC
CGCCCGGCGGACCTCCACGGTACCGCCACCCGAATCCTAACTCTGCCTTCAGGCTATGGTCTCGGTTTGTTTCACTGGCT
GATATGGTTCGGTTGACTGGTGTCGCGCAGAGCCCAAGAAGGTGGTCGAGGTCGAGGACTAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr1D_1_TraesCS1D01G197900
CTTGGATTACTTAAATGTAAATCATGGCATGTACCTGAAACTGATTTGAACAAGTTATGAGCAGCAGCATCACAATTGGG
TCACTTAAATATCCTAGCATGTACTTGGAAATGATTTAGCAGAATGAACTAA---------------AGG----------
----TGATAGCCCCTAAGAGCACAGCCTGGATGGAAAGCCTATAATCCCTAGCAGTTCCTTGTCTTCTTGGACGCTTGAT
CCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAGAAGAACATGCCAAGCCGGAAACAAACATAAAC-
-----------------------TCTTGTGATCGTATTGCA-AACAGTATCAATTC--------GAACAATAAACCATAA
TCAACCCTAAATTCTTATGCTCATTTTGAATTTGAGTGAGATTTATGGTGTTG----------TTACCTGGCCTGGAGAT
GAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGCGACCTGACCTCCTTTTGCAGCGCCTCCA
TGACCTCCGACTTGAGCTCTGCGGGGGGAAGACCAGCCAGACCAATTCGACTGCTTAACCGAGCGGCGGAGGAGAAAAGT
GGAAGGGGACTA-GGGTTGCGAGGTGCCGATGGCGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTAGAGCGCGTCG
ATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCGCGCCTCCCGCGCTCGCCGCCGAGACGGTCGACCTCGCCGG
AGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTTCCGTAGGGGTGGTCACTGGTCAGACAACG----GAA
TTATAGGACCCCGCCAAGTGGGCCGTG-------------TAAATGGGCCGGGCTGCTACTGCACTCTGTAAGTGGGAAC
TGGGAAGCGATCCGTTTGTCTCTCTCCCCCATTCTCCAATCCCCACGACGAGATCCATCCACCCTAGAGGCCAAGAAGAG
AAGGGAGGAGAGAGAGAGGCCGGCGGCGGCGGC---GGAGCAGGCGATCGGAGATGGTGCGGAAGGCCAAGGTCGAGTTC
GACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGGAGCACCT
GGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGGATCGAGGGCG
TCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGGTGGGGCAAGGACCAC
CGCCCGGCGGACCTCCACGGTACCGCCACCCGAATCCTAACTCTGCCTTCAGGCTATGGTCTCGGTTTGTTTCACTGGCT
GATATGGTTCGGTTGACTGGTGTCGCGCAGAGCCCAAGAAGGTGGTCGAGGTCGAGGACTAGCACGGTTGCTTCCGCCGC
CATTCCTGGAATGGAGAGGTCAGGGTGATTCTTGTTATT--------------------------------------ATG
TACGCACGATGCAGTTTGTGGTGAAATGCACATGATTTGTTTCAAATGTTTATCATTCCATTAACCAA-TTCAGATTTCT
GTTTGGGGTCACATCGCCATGCTTAGATAGTTGGGAGCTTGGGAATGTGGTAGTAC---AACACCAAACATTAGCACTGG
TGAACATTTTTGGTTTATA-GGGGGTTTGAACTAGCACAAAAGGTTTTGTCGAGGAGTTGGGGA-------GGAAGGGGT
TTGAACTGGAAGGGTGTTTGTCTTGGCACC-TAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTATTGAAATGGATTTT
CCTCTTGTCGAACAAGAAATACTGCTTGTCATGCGGACGAGGGGTATTAAATCCTAAAACTTCCCAAAGAAATATCCCTC
ACTCAAATGCCCACTAAGTTGACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGATATATGGTAACGGGCTA
GCATCGTTTTCCCGATG-TGTTACCTCGCTGCTAAGACTCACTGTTGCTGCTGGCCTATTTCTTATTTTTCCTGAACCTA
AGTTATTTGAATCAAAATC-------------------------------------------------------TACATG
AAGTCAACTTTATATAGTGTTTACATTTAGTGATATCCAGACAACTAATATTTTGGGATGTTTTTGGTTCTTGCGATCAT
ATTTCCCTGGATCAAATCATGATCGATTCGTAA-TTTGTTAGCCATCATCATACCTTATCTGGCCTAACAATGAAAGGAT
ATCATGATTCACACATCGATGCTATAACCTAGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGGTGTGCTCTGATA
CTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCAGTCTGCTCTTTCAGAGTACGAGGAGTATCTTTGCTAAGCG-AT
TTGTCATTGCATCATCCCTTTTGGGAGTGAGCTAAAGCTACCCTTAATGCC
>chr1B_1
CTTGGATTACTTAAATGTAAAT--------GTACCTGAAAATGATTTAAACAAGTTATGAACAGCATCATCACACTTGGG
TCACCTAAATATCCTAGCATGTACTTGGAAATGATTTAGCAGAATGCAACTACAGGTGACTGAAATCAGG----------
----TGATAGCCCCTAGGAGCACAGCCTGGATGGAAAACCTATAATGCCTAGCAGTTCCTTGTCTTCTTGAGCGCTTGAT
CCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAGAAGAACATGCCAAACCGGAAATCAAACCTTAAA
TTCTTATGCATTTTGTATCCCATTCTTGTAATCGTATTACACCACAATCTCAGTTCCTAGCGGGGTACAATAAACCATAG
TCAACCTTAAACTCTTATGCCCATTTTGTATTTGAGTGAGATTTATGGTGTTGCTGTCTGTTGCTACCTGGCCTGGAGAC
GAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGCGACCTGACCTCCTTTTGCAGCGCCTCCA
TGACCTCCGACTTGAGCTCTGCGGGGGA---ACCAGACAGACCAATTCGACTGCTTAACTGAGAGGGGGAGGACATGAAG
GGAGGGGAACTAGGGCTTGCGAGGTGCCGAGGGGGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTAGAGCGCGTCG
ATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCCCGCCACCCGCGCTCGCCGCCGAGACGGTCGACCTCGCCGG
AGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTTCCGTAGGGGTGGTCACTGGTCAGACTCAACAGCGAA
TTATAGGAACCCGCCAAGTGGGCCGTGTAAATGGGCCATATAAATGGGCCGGGCTGCTACTGCACTCTGTCTGT---AAG
TGGGAAGCCATCCGCTCGTCTCTCTCCCCCATTCCCCAATCCCCACGACGAGATCCATCCACCCCAGAGGCCAAGAAGAG
AAGGGAGGAGAGAGAGAGGCCGGCGGCGGCGGAGGAT---CAGACGATCGGAGATGGTGCGGAAGGCGAAGGTTGAGTTC
GACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGGAGCACCT
GGTGCGGGAGAAGTGGATCCAGATCGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGGATCGAGGGCG
TCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGATGGGGCAAGGACCAC
CGCCCGGCGGACCTGCACGGTACCGCCGCCCGAATCCTT-CTCTGCCTGCAGGCTATGGTTCC-GTTTGTTTCACTGGCT
GATATGGTTTGGTTGTTTGGTGTTGCGCAGAGCCCAAGAAGGTGGTTGAGGTCGAGGAGTAGCTC---TGCTTCCGCTGC
CGTTCCTGGAATGGAGAGGTCAGGGTGCTTCTTGTTATT--------------------------------------ATG
TACGCTCGATGCAGTTTATGGTGAAATGCACATGATTTGTTTCAAATGTTTACCATTCCATTAACCAA-TTGAGATCTCT
GTTTGGGGTCACATCGCCATGCTTAGATAGTTGAGAGCTTGGGAATGTAGTAGTAG---AACACCAAACATTAGCACTGG
TGAACATTTTTGGTTTATAAGGGGGTTTGAACTAGGACAAAAGGTTTTGTCCAAGAGTTGAGGAGGAAGGCGGAAGGGGT
TTGAACTGGAAGGGTGTTTGTCTTGGCATCTTAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTATTGAAATGGATTTT
CCTCTTGTCGAACAACAAATACTGCTTGTCATGCAGACGAGCGGTATTAAATCCTAAAACTTCCCAAAGAAATATCCCTC
ACTCTAATGCCCACTAAGTTGACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGTTATCTGTTAAGGGGCTA
GCATCGTTTTCCCTATG-TGTTACCTCGCTGCTAAGACTCACTATTGCTGCTGGCCTATTTCTTATTTTTCCTGAACCTA
AGATATTTGAATCAAAATC-------------------------------------------------------TACATG
AAGTCAACTTTATGTAGTGTTTACATTTAGTGATATCCAGACAACTAATATTTTTGGATGTTTTTGGTTCTTGCGGTCAT
ATTTCCCTGGATCAAATCATGATCGATTCATAATTTTGTTAGCCATCATCATACCTTATCTGGCCTAACGCTGAAAGGAT
ATCATGATTCACACATCCATGCTATAACCTTGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGATGTGCTCTGCTA
CTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCACTCTGCTCTTTCAGAGTACGAGGAGTATCTTTGCTAAGCAA-T
TTGTCATTGCATCACCCCTTTTGGGAGTGAGCTAAAGCTACTCTTAATG--
>chr1A_1
CTTGCATTACTTAAATGTAAATCATAGCATGTACCTGAAAATGATTTACACAAGTTGTGAGCAGCTGCATCACACTTGGG
TCACTTAAATA---TAGCATGTACGTGGAAATGATTTAGCAGAATGAACTAC---------------AGGTGAGTGGAAT
CAGATGATAGCCCCTAGGAACATAGCCTGGATGGAAAGCCTATAATCCCTAGCAGTTCCTTGTCTTCTTGGACGCTTGAT
CCAGCTCCGCAATTTTCCCCTGTTGCTTGGGCAGGTAACCACCTGAAAAGAACAAACCAAGCCGGAATCAAACATAAAC-
-----------------------TCTCGTGATCGTGTTACA-CACAATCTCAATTCCTAGCTGGGAACAATAAACCATAA
TCAACCTCAAACTCGTGTGCTCATTCTGTATTTCAATGAGATTTACGGTGTCACTGTGTGTTGTTACCTGGCCTGGAGAC
GAGGTTGATGCGGGAGCGCGGGGCGGCGAACATCCAGCTGTTGTCGTCGAGAGACCTGACCTCCTTTTGTAGCGCCTCCA
TGACCTCCGACTTGAGCTCTGCGGGGGA---ACCAGACAGACCAATTCGACTGCTTAACTGAGAGGGGGAGGACATGAAG
GGAGGGGAACTAGGGCTTGCGAGGTGCCGAGGGGGATGGATTTACCGGCCATGGCCTCGTCCTTGCGGTAGAGCGCGTCG
ATCGAGTCGGCGAGGTCGTCGGCAGCGGAGATCGCGATCCCGCCTCCCGCGCTCGCCGCCGAGACGGTCGACCTCGCCGG
AGAGCTCATCGGAGATCGGCCTCGTTTGAAACGCGGCGCCCTTCCGTGTGTGTGGGTCACTGGTCAGACTCAACAGCGAA
TTATACGACCGCGCCAAGTGGGCCGTGTAAATGGGCCATATAAATGGGCCGGGCTGCTACTGCGCTCTGT-------AAG
TGGGAAGCCATCCGTTCGTCTCTCTCCCCCATTCCCCAATCCCCACGACGAGATCCATCCACCCCAGAGGCCAAGAAGAG
AGGAGA-GAGAGAGAGAGGCCGGCGGCGGCGGCGGAGGAGCAGGCGATCGGAGATGGTGCGGAAGGCGAAGGTCGAGTTC
GACGAGAGGCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGGAGCACCT
GGTGCGGGAGAAGTGGATCCAGATTGAGACCGCCAAGATCATCCGCGACCGCCTCCGCTGGTGCTACCGGATCGAGGGCG
TCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAGTACCTCGAGTCCACCCGCGGCGTCGGGTGGGGCAAGGACCAC
CGCCCGGCGGACCTCCACGGTACCGCCGCCCAAATCCTAACTCTGCCTTCAGGCCATGGTCTAGGTTTGTTTCACTGGCT
GATATGGTTTGGTTGTTTGGTGTCGCGCAGAGCCCAAGAAGGTGGTCGAGGTCGAGGAGTAGCACGGTCGCTTCCGTCGC
CGTTCCTGGAATGGAGAGGTCAGGGTGCTTCTTGTTATGCTCAGAATCTTAGTTATTATGCACATGATTTGTTTCAAATG
TACGCACGATGCAGCCTATAGTGAAATGCACATGATT-------AATGTTTATCATTCCATTCACCCACTTCAGATTTCT
GTTTGGGGTCACATCGCCGTGCTTAGATAGTTGGGAGCTTGGGAATGGTGTAGTAGTAGAACACCAAACATTAGCACTGG
TGAACATTTTTGGTTTATA-GGGGGTTTGAACTAGGACAAAAGGTTTTGTCGAGGAGTTGAGGA-------GGAAGGGGT
TTGAACTGGAAGGGTGTTTGTCTTGGCACCTTAACTGTGTGTGCAAACTGTTCTTTCCAGCTTGTACTGAAATGGATTTT
CCTCTTGTCGAACAACAAATACTGCTTGTCATGCGGACGAGGGGTA-TAAATCCTAAAACTTCCCAAAGAAATATCCCTC
ACTCAAATGCCCACCAAGTTTACTCATGACTTATCCCCGGACCAAACCTGGGTGAAAAGGAGATATATGGTAATGGGCTA
GCATCATTTTCCCTATGTTGTTACCTCGCTGCTAAGACTCACTGTTGCCGCTGGCCTATTTCTTATTTTGCCTGAACCTA
AGATGTTTGAATGAAGATCTACATGAAGTCAACTTTATATAGTGTGTACATTTAGTGATATTTGAATGAAGGTCTACATG
AAGTCAACTTTATATAGTGTGTACATTTAGTGATATCCAGACAACTAATATTTTTGGATGTTTTTGGTTCTTGCGGTCAT
ATTTCCCTGGATCAAATCATGATTGATTCGTAATTTA-TTAGCCATCATCATACTTTATCTGGCCTAACGCTGAAAGGAT
ATCATGATTCACACATCCATGCTATAACCTTGTTCACCTCAATTGTTAGTAAAGCTGGATTGCTGAGATGTGCTCTGCTA
CTCAGGCCCAGGTAACGGGTACTGACTAACAAAGGCAGTCTGTTCTTTCAGAGTACGAGGAGTATCTTTGCTAAGCAAAT
TTGTCATTGCATCACCCCTTTTGGGAGTGAGCTAAAGCTACTCTTGATG--
>SNPs
-------------------------S--------------S------S--------------------------S-----
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S---S---S-S-------------------------------
------S----S----------------S--------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------SSSS-----S----------------------S---S--S------S-SS-SS
---S---S-------S--------------S--S----------------------------------------------
---------------------------------------S----------------------------------------
---------------------------------------------------------------------SSSS-------
----------------------------------------------------------------------SS--SSS--S
--------S-------S-----------------S-----------------------------S---------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
---------S-----SS-----------------------------------------S---------------------
-S-------------------------S----------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------------S------S------------------------
-----------------------------------S------------------------S-------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------------------------S------
-------------S------------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------------------------------S--------------------S----
---------------------------------------------------------------------SS---------
-----------------S------------S------------------------------------S---------S--
----------------------------------------------------------------------------S---
--------------S--------------------------S-------SS
>forward_644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGCGGAGGAGAAAAGT
GGAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_1821
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GGGAGGAAGGGGTTTGAACT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
