>input_sequence_81239
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-------ATGGAGGAGCGGGGCAGGGGCGGGAGCAACAAGATCCGGGACATCGTGCGGCTGCAGCAGCTGCTCAAGCGGT
GGAAGCGGATGGCGGTGGCGCCGGGCGGCGGCGGCAGGGGCAAGAACGGCGGCGGCGGCGGCGCCGTGCCCAAGGGGTCC
TTCGCGGTGTACGTGGGCGAGGAGATGCGGCGGTTCGTGATCCCCACCGAGTACCTGGGCCACTGGGCGTTCGAGGAGCT
GCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCGGCACGAGGGCGCGCTCCGGATCCCCTGCGACGTCGAGGCCTTCGAGG
GCATCCTCCGGCTCGTCGCCGCCGGGAAGAAGGACTCCGCCGGCGCCG------ACATGTGCGACCGCTCCTGCTCCTCC
GAGACCGAGATCCTCTGCAGATGA--------------------------------------------------------
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>chr7D_1_TraesCS7D01G411100
TCTATTTATAACACTCTAGTTCATTAAAAAAATTATAACACTCTAGATATTTTGTTGCCCTTTCTTTTGGTGCAACCAAA
CAATATTTACTGTCAGTCCTGCTAAGTCTCGGTCGATTGAGACTTCACTCGCTCATCATTCTAACCGCTTGGTCGCTTTG
GAAACACCGTAACGGGAAGATCTTCGACGGCGCACAAGTCTCCATCGACAACCTGCTGACCTCAATCAAAGACGAGGCAA
GACTTTGGGCTAGAGCTGGAGCCACAGGGCTTGAGAGCATCATTCCTCTAATATGAACTTCTGTAGGGGCTGAGCAACCC
CTTCTGATGCTCACTCTGCTTTCCCTTTTGCTGCCAGCATGCGTACGGCCAAGGGACAAGCTCTTCTGTTACTCTCCCCC
ATCAATGAAAAGATACTACCCTGAGTGTATTCCTGAAAAAAAGTCTCAGCCAATACTATATCCGTGAGATCTTACATTAA
GATATGTGGAAAATTTTCTTTTCAGTTTTTTCTCTCTTTTGCAAATT-ATGTCACTTGAGTGAAACTTGATTAAATCTCG
ATCGACTGAGACCTAGCCACACCCATTTACTATACGTAATTATGTTCTTAGTTCTTGCGGAAT-----------------
------------TTAACATTGCCATGACAGTTGTTCCT-AAGTGATCTTTCATGCTCTATTGGTATTTTCGAAACCTTGC
TAAACAAATAAACCCTTATTATACCTCAATAATAGTGCAT-AGACCTTTGCAAAATAAA----------TGCCTCGAGAA
AAAG-AAAAAAATGGTGCATCGATTTGAGCA----ACTGATAAACAAACCGAAGAGACTCAGGGGTCACGAGGAGGCGGG
CTCGGAGCCACAGGCAACCACGAGAGGTCGCCGATCTCCCTCCCCTATATATACAGCCCCCGCCGCAGTTCTCTGCACCA
GCCAAACCAACCGAAGCCAACCATCAACCAGCAGCGCCCAGCCACACAGCGCCGCCGCAGTCCCGCTCGACCGATCAATC
GGCGGCAATGGAGGAGCGGGGCAGGGGCGGGAGCAACAAGATCCGGGACATCGTGCGGCTGCAGCAGCTGCTCAAGCGGT
GGAAGCGGATGGCGGTGGCGCCGGGCGGCGGCGGCAGGGGCAAGAACGGCGGCGGCGGCGGCGCCGTGCCCAAGGGGTCC
TTCGCGGTGTACGTGGGCGAGGAGATGCGGCGGTTCGTGATCCCCACCGAGTACCTGGGCCACTGGGCGTTCGAGGAGCT
GCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCGGCACGAGGGCGCGCTCCGGATCCCCTGCGACGTCGAGGCCTTCGAGG
GCATCCTCCGGCTCGTCGCCGCCGGGAAGAAGGACTCCGCCGGCGCCG------ACATGTGCGACCGCTCCTGCTCCTCC
GAGACCGAGATCCTCTGCAGATGAGGCGACGGGCGGCTGGCTG----------CTCCCTTGCTCTGAAGAATGAGTTCAG
ACAGGGAGCAGAGATCTCCTTCCTTC--CTTC-TTTTTTTCCTCTCTCCTTTCTTGCGTTCTCCCGATCTTTCTTCTCGG
TTTTAGCTGAAGAAAGGGGAAGAGGTTGCAGCTAGCTGGATCTGTAATTTGTACAACA-----------CCAAGGATTGT
TCCAATGCAAAAACTTAGGCATTTGATCCTGTTTGTGCGTGCCATTCTCGGTTG-CTTACATTCCACTGCCTCCATTGTT
TCAGAAACTGAAACCAATTAAGCAACTGAAGAACAGTAGCCTT-------------------------CTTTGCTTAACA
GTTGAGCAACCGGAACAAAGGGTGCATTTCACTTCACGCAGACGATAACATCCCATCATTGGGCACCAGGGTTTCAGCTC
AAGGCACCGGCAGCAGGTCACAAGAGTGTTGGGGAAAATGCAACTGTTCTGACATTAAGAAAAGCCGTTTTCTTTCTGAT
GGCTCATGGCATACGCATGTACAGACGCACCATGCCCACTCCATTGACAATAGTTGCTTATTATCCACTACTACGTCCAG
TCTCGCCTGCGCTTCACGCCATGGCGGCCG-GATGATCCATCGACCCCATGTGCGTACCGGTGCTCCGGCCCCAGGCCCG
CCGCGGCCCTAACTCACTCCATTGCTCATTGTCAATACATGGATGGAATCAGCATCTTCTGAATCATGTTGCCACTACCT
CACATAGTGTCAAGGCATTAATAAGAGAGAAGCCAGATAAAAAGGGAGATTGTGTAGTACATGTTCACATGGCAGGCGCA
CGGCGCACCTGGCCGCAGGCCCTCGGAGCATCAACACACGAGGGGGGAGGCTCTCTGCATCTTTACCTGAATCTTGCATG
TGCTGCTGAAATGGAGCAGCAGGTGTGTGCAGGTAGCCAGAGATCGATCGGTTTCATTTGTTTGGTGTCTGAGTTCTTGA
TTTTGGAATCGGAATAATAATCTCTAGTTGGTTTG
>chr7A_1
TCTACTTATAACACTCTGGTTCATTAAAAAAAT-ATAACACTCTAGATATTTTGTTGCCTTTTCTTTTGGTGCAACCAAA
CAATATTTACTATCAGTCCTGCTAAGTCTCGGTCGACTAAGACTTCACTCGCTCATCATTCTAACCGCTTGGTTGCTCTA
GAAACATTGTAATGGGAAGATTTTCGATGATGCACAAGTCCCCATCGACAACCTGCTGACTTTAATCAAAGACGAGGCAA
GACTTTCGGCTAGAGCTGGAGCCACAGGGCTCGAGAGCATCATTCCTGTAATATGAACCTCTGTAGGGGCTGAGCAACCC
CTTCCGATGCTCACTCTGTTTTCCTTTTTGCCTCCAGCATGTGTACGGCCAAGGGACAAGCTCTTCTGTTACTCTCCCCT
ATCAATGAAAAGATACGCCCCTGAGCGTATTTCTC-AAAAAAGTCTCAGTCGATGCTATAGCCGTGAGATCTTATATTAA
AATCTGTGTAAAATTTTCTTTTCAGTTTTTTTCCCCTCTTGCATGTTAATGTCACTTGACTGAAACTTGATTAAATTTCA
ATCGACTAAGACCTAGGCACACCCATTTACTATATGTAATTCTGTTCTCAGTTCTTGCGGAATTTAACTCTTTTTTTGCG
GGGTTGCGGAAGTTAACATTGCCATGACAGTTGTTCCT-AAGTGATCTTTTATGCTCTA---GCAATTTCGAAACCCTGC
TAAACAAACAAACCCTTATTATACCTCAATAATAGTGCATTAGACCTTTGCAAAAAAAA--------ATTGCCTCGAGAA
AAAGAAAAAAAATGGTGCATCGATTTGAGCA----ACTGATAAACAAACCGAAGAGACTCAGAGGTCACGAGGAGGCGGG
CTCGGAGCCGCAGGCAACCACGAGAGGTCGCCGAGCTCCCTCCTCTATATATACACCCCCCGCCGCAGTTCTCTGCACCA
GCCAAACCAACCGAGGCCAACCATCAACCAGCAGCGCCCAGCCACACAGCGCCGCCGCAG-CCCGCTCGACCGATCAATC
GGCGGCAATGGAGGAGCGGGGCAGGGGCGCGAGCAACAAGATCCGGGACATCGTGCGGCTGCAGCAGCTGCTAAAGCGGT
GGAAGCGGATGGCGGTGGCGCCGGGCGGCCGGGGCAAGAA------------CGGCGGCGGCGCCGTGCCCAAGGGGTCC
TTCGCGGTGTACGTGGGCGAGGAGATGCGGCGGTTCGTGATCCCCACCGAGTACCTGGGCCACTGGGCCTTCGAGGAGCT
GCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCGGCACGAGGGCGCGCTCCGGATCCCCTGCGACGTCGAGGCCTTCGAGG
GCATCCTCCGCCTCGTCGCCGCCGGGAAGAAGGACTCCGCCGGCGCCGCCGCCGACATGTGCGACCGCTCCTGCTCCTCC
GAGACCGAGATCCTCTGCAGATGAGGCGACGGCCGGCTGGCTG----------CTCCCTCGCTCTGAAGAATGAGTTCAG
ACGGGGAGCGGGGATCTCCTCCTTCCTTCTTCTTTTTTTTCCTCTCTCCTTTCTTGCGTTCTCCCGATCTTTCTTCTCGG
TTTTAGCTGAAGAAAGGGGAAGAGGTTGCAGCTAGCTGGATCTGTAATTTGTACAACA-----------CCAAGGATTGT
TCCAATGCAAAAACTTAGGCATTTGATGCTGTTTGTGCGCGCCATTATCCGTGTCTCTGCATTCCCCTGCCTCCATTGTT
TCAGAAACTGAAACCAATTAAGCAACTGAAGAACAGTAGCCTGTAGTACTTCACAGTTCAGATGCCCCCTTTGCTTAACA
GTTCAGCAACCGAAACT-----------------------------------------------------GTTCCAGGCC
AAGGCACCGGCAGCAGGTCACAAGAGTGTTGGGGAAAATGCAACTGCTCTGGCATTAAGAAAAGCCGTTTTCTTTCTCAT
GGCTCATGGCATACGCATGTACAGATGCACCATGCCCACTCCATTGACAAGAGTTGCTTATCATCTACTACTACGTCCAG
GCTCGCCTGCGCTTCACGCCATGGCGGCCGAGATGATCGATCGGCCCCATGTGCGCACCGGTGCTCCGGCCCCAGGCCCG
CCGCGGCCCTAACTCCATTCT----TCATTGTCAATACATGGGTGGAATCAGCATCTTCTGAATCATGTTGCCACTACCT
CATATAGTGTCAAGGCATTAATAAGAGAGGAGCCAGATAAAAAGGGAGATTGCGTAGTACATGTTCACATGGCAGGCGCA
CGGCGCACCTGGCCTCAGGCCCTCGGAGCATCAACACACGAGGGGGGAGGCTCTCTGCATCTTTACCTGAATCTTGCATG
TGCTGCTGCAATGGAGCAGCAGGTGTGTGTGGGTAGCCGGGGATCGATCGGTTTCATTTGTTTGGTGTCCGAGCTCTTGA
TTTTGGAATCGGAATCATAATCTCTACTTGCTTTG
>chr7B_44
-------------------------------------------TAGATATTTTGTTGCCTTTTCTTTTGGTGCAACCAAA
CAATATTTTTCA--------------------------------------------------------------------
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------------------------------------TAATTCTTTTCTCAGTTCTTGCAGAAT-----------------
------------TTAACATTGCCATGACAGTTGTTTCTCAAGTGATCTTTTACGCTCTA---GTATTTCCGAAACCCTGC
TAAACAAACAAACCCTTATTATACCTCAATAATAGTGCAT-AGACCTTTGCAAAAAAAAGAAAAATTATTGCCTCGAGAA
AAAG-AAAAAAATGGTGCATCGATTTGAGGCAACTACTAATAAACAAACCGAAGAGACTCAGAGGTCACGAGGAGGCGGG
CTCGGAGCCACAGGCAACCACGAGAGGTCGCCGATCTCCCTCCTCTATATATACACCCCACGCCGCAGTTCTCTGCACCA
GCCAAACCAACCGAAGCCAACCATCAATCAGCAGCACCCAGCCACACAGCGCCGCCGCAGTCCCGCTCGACCGATCGC--
--CGGCAATGGAGGAGCGGGGCAGGGGCGGGAGCAACAAGATCCGGGACATCGTGCGGCTGCAGCAGCTGCTCAAGCGGT
GGAAGCGGATGGCGGTGGCGCCGGGCGGCCGAGGCAAGAACGG---CGGCGGCGGCGGCGGCGCCGTGCCCAAGGGGTCC
TTCGCGGTGTACGTCGGCGAGGAGATGCGGCGGTTCGTGATCCCCACCGAGTACCTGGGCCACTGGGCCTTCGAGGAGCT
GCTCCGGGAGGCGGAGGAGGAGTTCGGGTTCCGGCACGAGGGCGCGCTCCGGATCCCCTGCGACGTCGAGGCCTTCGAGG
GCATCCTCCGGCTCGTCGCCGCCGGGAAGAAGGACTCCGCCGGCGCCGCCGCCGACATGTGCGACCGCTCCTGCTCCTCC
GAGACCGAGATCCTCTGCAGATGAGGCGACGGGCGA----CTG----------CTCCCTCGCTCTGAAGAATGATTTCAG
ACAGGGAGCAGAGATCTCCTTCTTCCTTCTTC-TTTTTTTCCTCTCTCCTTTCTTGCGTTCTCCCGATCTTTCTTCTCGG
TTTTAGCTGAAGAAAGGGGAAGAGGTTGCAACTAGTTGGATCTGTAATTTGTACAACT-----------CCAAGGATTGT
TCCAATGCAAAAACTTAGGCATTTGATCCTATCTGCGCGTGCCATTATCCGTGTCTCTACATTCCCCTGCTTCCATTGTT
TCAGAAACTGAAACCAATTAAGCAACTGAAGAACAGTAGCCT-------------------------CCTTTGCTTAACA
GTTCAGCAACTGGCACAAAGTGTGCATTTCACTTCACGCAGACGATACCAGCCCATGATTGGGCGCCATGGTTTCAGCTC
AAGGCACCGGCAGTAGGTCACAAGAGCGTTGAGGAAAATGTAACTGTTCTGACATTAAGAAAAGCCGTTT-CTTTCTGAT
GGCTCATGGCATACGCATGTACAGATGCACCATGCCCACTCCATTGACAAGAGTTGCTTATTATCTACTACA---TCCAA
GCTCGCTTGCGCTTCACGCCATGGCGGCCG-GATGATCGATCGGCCCCATGTGCGTACCGGTGCTCCGGCCCCAGGCCCG
CCGCGGCCCTAACTCCGCTCT----TCATTGTCAATACATGGATGGAATCAGCATCTTCTGAATCATGCTGCCACTACCT
CACATAGTGTCAAGGCCTCAATAAGAGAGAAGCCAGATAGAAAGGGAGATTGTGTAGTACATGTTCACATGGCAGGCGCA
CGGCGCACCTGGCCTGAGGCCCTCGGAGCATCAACACACGAGGGGGGAGGCTCTCTGCATCTTTACCTGAATCTTGCATG
TGCTGCTGCAATGGAGCAGCAG----------GTAGCCAGGGATCGATCGGTTTCATTTGCTTGGTGTCTGAGCTCTTGA
TTTTGGAATCGGAATAATAATCTCCACTTGCTTTG
>chr1D_1101
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---------------------------GCGGCGGCAGGGGCAAGAGCGGT------GGCTGCGCCGTGCCCAAGGGGTCC
TTCGCAGTGTACATGGGCCAGGGGATGTGGCGGTTCGTGATCCCCACCGAGTACCTGGGTCACTGCTCGTTCGAGGAGCT
GCTTCGGGAACCGGAGGAGTTGTGA--GTTCTAGCAAGATGGCGCGGTCCGGATCCCCTGCGAGTCGA-----------G
GCATCTTCTAGCTCATTGCCCCCGGGAAGAAGGATTCCGCTGGTGTCGCCGCCGACATGTGCGACTGCTTCTGCTCCTTC
GAGACCGAGATCCCGTGCAGATGAAGCGCTGGACTCCCTAGAGTTCTGGCGTCCTCCCTTGCTCTGAAGAAT----TCAG
AAAGATAAGAGAGATGTCCTTCTTCCTTCTTA-TTTT--TCCTGTTTCCTTTATTGCGTTCTCCCGTTCTTTCTTCTCGG
TTTTATCTAAAGAAAGAGTAAGAGATTGCAGCTAGTTCGATCTGTAATTGGCAAAACACCAGGAACAGGCCAAGGAGTGC
TTCGGTGCAAAAACTTAAGCATTTGACCTTGCTTGTGTGTGCCATTCTCTTTTG-TTTACATTCCCCTGCTTTCATTATC
TC-GAAACTGAAACTAATTGAGCAACT-----------------------------------------------------
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-----------------------------------
>SNPs
----S------------S---------------S-------------------------S--------------------
-----------S------------------------S-S----------------------------------S---S-S
------SS----S--------S-----S-SS---------S-------------------S-S-----------------
------S------------------------S---------------S----------S---------------------
----S-------------S-----S------SS--------S-------------------------------------S
----------------SS-------S-----S--SS-------------S-S--S-----S-------------S-----
S--S----S----------------------SS-S--S-----SS--------------S----------------S--S
-------S--------S-----------------S------S------S-------------------------------
--------------------------------------------------S--------SSS--------------S---
--------S----------------------------------------------S------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------S-----------S------------------------
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---------------------------------------------S----------------------------------
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----------------------S-S-------------------------------------------------------
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-------------------------------------------------S-----S---------S--------------
------------------------------------------S-------------------------------------
---S----------------S--------------------------S--S-----S-------S---S-----------
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-------------------------S------------------------S--------------S--------------
S-------------------------------------S----S------------------------------------
---------------SS-S-SSSSS-------------------------------------------------------
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--------------S-----------------------------------------------------------------
--------S--------------------SS---------S--------------------------------S------
--------------------------S---S----
>forward_190
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----------AACGGGAAGATCTTCGACGG--------------------------------------------------
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>reverse_1905
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----------------------------------------------------------------ACCAGGGTTTCAGCTC
AAGG----------------------------------------------------------------------------
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-----------------------------------
