>input_sequence_81235
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------------------------ATGGCGCGTACGAAGCAGACCGCCCGGAAGTCCACCGGCGGCAAGGCGCCCCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACGGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCA
CCGTGGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTG
CGGGAGATCGCGCAGGACTTCAAGACGGACCTCAGGTTCCAGAGCCACGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGC
GTACCTCGTCGGGCTCTTTGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTCGCCCGCCGCATTCGCGGGGAGCGCGCATAG---------------------------------------------
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>chr7D_1_TraesCS7D01G159300
AGAGGCCGTGAGCGGTGAGCCTGTGCCTATTGGATTAAGAGCATCACGAGCAATTCCCTAA-CCCCTCCCTTTGAGTGTG
TTTAAG----GGCTCTTTCAATAATTTTATTGAGTTTCACGGGTGTTCGGCTGTAGTAATTCCGCTCTAAACCTCTTCCC
AAA-CTAAGACTGACATATGTGTCCTGTCTGTCAGTGGATCACACGCACACACACTCTCTCTCCCCCTCTCTAACGCGCG
TGTATGGAAGACTCCCGCGACC----------------------------------------------------------
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------------------------------------GATGAAGCTCCGATGGCTGCCTACATGCGGCGGC----------
-AGTGCAGTAGGCGACGATTGGGCAGGTAGCGGCGGCGGCT---GCGC---GTGTGTCCGGCAGTCATTTGCGGCGACAC
ACTGACATTGCATGGGTGGAAAAAATATAGGGAGAGAAGCAACGCTTCTTCTATTTGAGGGGTGATGCGTGTTTTTTTCC
GAAGAGATTCAATTCTTTTTTACGGTTAGGG--AAACTGCTGGATCATTTTTTATTTGTCTCAATTTTTCTTATACGTGT
ATTTTTTTAAAACGGGATTATATGTGTATTTTTTTCCGACGTGATATGTGTTT-TTTTAATA-----GACTGGAGATGTT
TTAAGAATGAAACGTCGTTGAGAAAAGAAGTCAACTGACTCGGTCGACGAACGCACGAGACCCACAGCCATATGCACCGC
CACGTCACCGATCCGCACCTCGTCGGGGATCTTGCACCAATCACCGCCAAGCACGGGGATCGTGTGCTTCCTGGCCGCAG
CCTCCAGCCGTTAGATCCAATCAATCACCCAAACGCAATCCGAGACACTCTCCCCCACGATCGGAAGAAACCGCCTCGGC
CAGGCTTCCCTTCCCCCACACCCGTCACCTATAAAATTCCCACCCCACTT---CCCCTCTCCTCCCCTCACTACCGAATT
CGTTGCCTTCCACTTCA------AGTTCTCCAA---------ACCACAGCGAGCGCAAGCCGAATCCCAGTTCGAAGTCC
TCGACAAGGAGAAGGAGAGA-TTGATGGCGCGTACGAAGCAGACCGCCCGGAAGTCCACCGGCGGCAAGGCGCCCCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACGGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCA
CCGTGGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTG
CGGGAGATCGCGCAGGACTTCAAGACGGACCTCAGGTTCCAGAGCCACGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGC
GTACCTCGTCGGGCTCTTTGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTCGCCCGCCGCATTCGCGGGGAGCGCGCATAGATCAAGCGTCTGCCTACTCGACTTAGGCCTTGTACAATGGGAGGT
GTTTAGAGAGATGCTTAGAAAAATAAATCGGGTTTTTCTGAAGCACCGGTACCTATTTCTATAGAAATAGAAAAATAAAT
CGAGTTTTTTTGAAGCACCGGTGCCTATTTCTACAGGAAGGGTCTTTCCTGTACAAATAAGCATCGGCACTTAAGAAAAG
CCTCGTTTATTTCTCGAAACACCTCCCATTGTACAATGCCTTAGCAACTTCCGTAGCCGGGTTGCAGCAA-----TGTAG
AGCTGTCCGTTCGTCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTTGTTGTAGAAAAAGG
TTACAGCAATGTAGAGCTGTCCGTTCGTCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTT
GTTGTAG-AAAA--AACTCTGGTTGGCTACATAGTTACAATGACTCATTTCC-TATTTCGTCTATATGGTTGGTTTGTGA
TAAAAATGCAAACAAATG-TCTCATTGTTTCCGAGTAATTCTGAAATTTCAGCGTTCTGTTCCTTAGATCCTGATGAAAT
TTGCTGCTGCGTTGTATGCAATTCTTGTGGCCTGTCTTGCTTACAGTTTTCTTGGTGTGGTGCCGTTTGGCCGTCCGTAT
TCTCGTCTTGCTGTGTTGGAGAATTTTGATTTCGGAGGGCGAACATGAAAGACATGGAGCCGGATCCCCTAACTTAGATA
ACAGGGCTATCATGAAAGACAACTTAGATTACAGGGCGAACATGATAGACATGGAGCCGGATCCTCTAAGATCCCCTAAC
TTAGATAACAGGGCTAACATGAAAGGTAACTTAGATTACAGGGCGAACATGAAAGACATGGAGCCGGATCTTCTAACTTA
GAGAAGCAAAGTCATAGTGCTACAATGTAATCCTAGTGTAAGATGAAGAAAAATGTTAAAGACGTTTAGCAGATTATTTA
CTATT
>chr7A_1
AGAGGCCGTGAGCGGTGAGCCTGTGCCTATGGAATTAAGGGCATCATGAGCAATTCCCTAAACCCCTCCCCTTGAGTGTG
TTCAAGGGCGGGCTCTTTTAATAATTTTATTGAGTTTTACGGGTGTTCGGTTGTAGCAATTTCCTTGTAAACCTCTTCCC
AAAACTAAGACTAACATATGTGTCCTACCTGTCAGTGGATCACACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAGCTTCGACGGCTGCCTACATGCGGCGGTGAGCCGGCGG
TAGTACAGTAGGCGACGATTGGGCATGTAGCAGCGGCGGTGGCAGCGC---GGGTGTCCGGCCGTCATTTGCGGCGACGC
ATTGACGTTGCATGAGTGGAAAAAATATATGGAGAGAAGCAATGCTTCTTCTATTTGAGGGGTGATGCGTGTTTTTTT--
GAAGAGATTCAA--CTTTTTTAGGGTTAGAG--AAACTGCTGGATCAGTTTTT-TTTGCCTCAATTTTTCTTATACATGT
ATTTTTTTAAAACAGGATAATATATGTATTTTTT--CGACGTGATATGTGTATATTTTAATA-----TACTGGAGATGTT
TTAATAATGAAACATCGTTGAAATAAGAAGTCAACTGACTCGGTCGATGAACTCACGAGACCC-CAGCCATATGTATCGC
CAGGTCACCGATCCGCACCTCGTCCGGGATCTCGCACCAATCAGCGCCGAGCACGCGGATCGTGTGCTTCCTCCCCGCAA
CCTCCAGCCGTTAGATCCAATCAATCACCCAAACGCAATCCGAGACCCTCTCCCCCACGATCGGAAGAAACCGCCTGGGC
CACGCTTCGCTTG-CCCACACCCGTCACCTATAAA-TCCCCACCCCACTTCCCC---TCTTCTTCCCTCACTACAGAATC
CGTCGCCTTTCACTTCA------AGTTCCCCAA---------CCCGCAGCGCGCGCAAGCAGAAGCCCAGTTCGAATT--
-CCCGGCGGCGGAGGAGAGA-CCGATGGCGCGTACGAAGCAGACGGCCCGGAAGTCGACCGGCGGCAAGGCGCCCCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACGGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGGA
CCGTGGCGCTGCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTG
CGGGAGATCGCCCAGGACTTCAAGACGGACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCCGCCGAGGC
GTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTCGCCCGCCGCATCCGCGGGGAGCGCGCATAGATTGCCCAAGGAAA-------------------------------
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-----------------------------------------------------------------AGCAA-----TGTAG
AGCTGTCCGTTCGTCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTTGTTG----------
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----TAG-AAAA--AACTCTGGTTGGCTACATTGTTACAATGACACGTTTCT-TATTTCGTCTATATTGTTGGTTTGTGC
T-AAAATGCAAACAAATG-CATCATTGTTTCCGAGTAATTCTGAAATTTCAGCGTTTTGTTCCTTAGAACCTGATGAAAT
TTGCTGCTGCGCTGTATGCATTTCTTGTGGCCTTGTCTTGCTACAG----------------------------------
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>chr7B_221
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------------------------------------------------------------------CTCTCTCATGCGTG
TGCATGGAAGACTCCGACGACC----------------------------------------------------------
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------------------------------------CGTGAAGCTCCTACGGCCGCCTACGTGCTGCGGCGGC-------
----GCGGTAGGCGGCGATCGAGCAGACGGCGACGGCGGCG---ACGTTGGGGGTGTCCAGCAGTCAATTGTGGCGGCAC
GCTGACATGGCATCGGTTGAAAATATATAGGGAGAGAAGCAACGCTTCTTCTATTTGAGGGGCGATGAGTGTTTTTCTTG
GAAGAGTTTCAT--TATTTTTAGGTTTAGGGATAAACTGCTGGAGCAGTTTTTGG--GTCTAAACTTCTCTTTTACATGT
TTTTTTTGGGAA---------------------T--AGACTGGAGATGTTTTTATTTTTTTGAACACGACTGGAGATGTT
TTAATAATGAAACGTCGTTGAAATAAGAAGTCAACTGACTCGGGCGATGAAA--ACGAGACTCACAGCCATATGCACAAC
CACGTCACCGATCCGCACCTCGTCGGGGATCTGGCGCCATTCAGCGCCGAGCACGCAGATCGTGTGCTTCCTCCCCGCAA
CGTCCAGCCGTTAGATCCAATCAATCACCCAAACGCAATCCGAGATCCTCTCCCACACGATCAGAAGAAACCGCCTGGGC
CACGCTTCCCTTG-CCCACACCCGTCACCTATAAA-TCACCACCCCACTTCCTC---TGTTCTTTGCTCACAACCCAATC
CGTCGCCTTCCAGTTCA------AGTTCCCCAA---------CCGGCAGCGCGCGCAAGCCGAAGCCCAGTTAGAATT--
-CGCGTAGGAGGAGGAGAGATCCGATGGCGCGCACGAAGCAGACGGCCCGGAAGTCCACCGGCGGCAAGGCGCCCCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACCGGGGGCGTGAAGAAGCCCCACCGCTACAGGCCTGGCA
CGGTGGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTG
CGGGAGATCGCGCAGGACTTCAAGACGGATCTCCGCTTCCAGAGCCACGCGGTGCTGGCGCTCCAGGAGGCCGCCGAGGC
GTATCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTGGCGCGCCGCATCCGAGGGGAGCGCGCCTAGATCAAGCATC-----------------------------------
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------------------------------------TGCCTTAGCAACTTCCATCGCTGGATTGCAGCAA-----TGT--
AGCTGTCTGTTCGTCGCCTCTGGTTTCAGATCGTGTTGGCAA-------TAGGCGACTTTTATTTTGCTG----------
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----TAAAAAAA--AATTCTGGTTGGTTACAGAGTTACAACGACTCATTTTCTTATTTCGTCTAA------GGCTTGTGC
T-AAAATGCAAAACAAGTTACTCGTTGTTTTAGAGCAATTCTGTAATTTCAGCGCTCTGTTCCT----------------
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>chr7D_598
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--AATAACGAAACGTCGTTGAAATAAGAAGTCAACTGACTCGGGAGATGAGG--ACGAGACCCACAGCCATATGCACCGC
CACGTCACCGATCCGCACCTCGTCGGGGATCTCGCACCAGTAAGCGCCGAGCACGCGGATCGTGTGCTTCCTCCTGGCAA
CCTCCAGCCGTTAGATCCAATCAATCACCAAAACGCAATCCAAGACCCTCTCCAACACGATCGGAAGAAACCGCCTGGGC
CACGCTTCCCTTG-CCCACACCCGTCACCTATAAAATTCCCACCCCACTT---C---TCTCCTCTCCTCACAACCCAATC
CGTCGCGATCCACTTCA------AGTTCCCCAAATCCCCAACCCCGCAGCGCGCGCAGGCCGAAGCCCGGTTCGCAGT--
-CGACGAGAAGCAGGAGAGA-TCGATGGCGCGTACGAAGCAGACCGCCCGGAAGTCTACCGGCGGCAAGGCGCCTCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCA
CGGTGGCGCTGCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTG
CGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCTGCCGAGGC
GTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTCGCCCGCCGCATCCGCGGGGAGCGCGCCTAGATCAAGCATC-----------------------------------
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------------------------------------TGCCTTGGCAACTTCCATCGCCGGATTGCTGCAATGTAGTGT--
AGCTGTCCGTTCGTCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAATAGGCCACTTCTATTTTGTTG----------
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----TAA-AAAAGT-ATTCTGGTTGGTTACATAGTTACAATGACTCATTTCCATATTTCGTCTATATGGTTGGCTTGTGC
T-AAAATGCAAACAAATG-ACTCGTTGTTTCAGAGCAATTCTGTAATTTCAGCGCTCTGTT-CTTTGATCCTGTTGAATT
TTGCTG--------------------------------------------------------------------------
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>chr7B_819
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---------------------------------------------------------------GAAGAAACCGCGTCGGC
CACGTTTCCCCTG-CC--CACCCGTCACCTATAAA-TTCCCACCGCACTTTCCC---TCGACTATCCTCAGTACACAATC
CGTTGCCTTCCAGTTCGATTTCGAGTTCCCCAA---------ACCGCAGCGCGCGCAAGTCGAAGCCCAGTTCGAATT--
-CGCGGAGAAGGA-GAGGGA-TCGATGGCGCGTACGAAGCAGACGGCCCGGAAGTCGACCGGCGGCAAGGCGCCCCGCAA
GCAGCTGGCCACCAAGGCGGCGAGGAAGTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCA
CGGTGGCGCTGCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCATTCCAACGCCTGGTG
CGGGAGATCGCACAGGACTTCAAGACGGACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCCGCCGAGGC
GTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCC
AGCTCGCCCGCCGCATCCGAGGGGAGCGCGCCTAGATCAGG---------------------------------------
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---------------------------------------CTTAGCAACTTCCGTCGCGGGATTGCTGCAA-----TGT--
AGCTGTCCGTTCGTTGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAATAGGCGACTTCTATTCTGTTG----------
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----TAA-AAAAAGAATTCTGGTTGGTTACATTGTTACAATGACTCGTCTT---------TCCATATGGTTTGTTTGTGC
T-AAAATTGCAAACAAATG-------------------------------------------------------------
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>SNPs
------------------------------S-S------S------S-----------------------S---------
--S---------------S------------------S------------S-----S----S-SS-S-------------
------------S-------------SS-----------------S-SSSSSSSSSSSSSSSSSSS------S-S---S-
--S------------SS---------------------------------------------------------------
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-------------------------------------------------S------------------------------
----------------------------------------S-----------S---------------------------
------------------------------------------------------------------------------SS
------------SS--------S------------------------S-----S----------------------S---
-------------S----S----S----------SS--------------------------------------------
----S----------------S-S-----------------------S----S---------------------------
--------------------------------S----------S----S------S----------------SS-----S
----------------------------------------------S---------------------------------
--S---------SS----------------------------------------SSS----------------------S
----------------------------S----------------S-----S------------S-------------SS
S----S-----S----------S---------------------------------------------------------
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---------------------------------S-------------------------S--------------------
------------------S-------------------------------------------------------------
----------------S-------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----S-------------------
----------------------------------------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------------------------------------------------------------------------S
-S-----------------S------------------------------------------------------------
-----------S--------S------------SSSS-SSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_222
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------------------------------------------CACGCACACACACTCTCTCT------------------
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>reverse_1789
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----------------------------CGGGTTTTTCTGAAGCACCG--------------------------------
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