>input_sequence_81234
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------------------------------------------------------------ATGGCCCGCACGAAGCAGAC
GGCGCGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCG
GCGGCGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAG
CTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAG
CTCCGCCGTGTCGGCGCTGCAGGAGGCCGCCGAGGCGTACCTGGTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCC
ACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCTCGCCGCATCCGTGGGGAGCGCGCCTAG---------
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>chr7D_1_TraesCS7D01G143500
TTTTAGATCAACAACAAATTCAACTAGGTCAAGGCTTACGTCGCCGCCCTTCTCCTCCTGGTCAATGTACAAATTGGCCT
ACTGGGTGTACATGTCCGTGCCCGGCTGGGTGTACGCAGTGGCGGAGCTATACAAGATTGATTGGGGGGCCAATGAGAAA
ATACAGTTTCTAAGGGTGGCAAAAGCTCTATTTTTTCTAATATAAAACTCCCTATATGAATTATCTTCACTAAATTTGCT
AGGCTGGGGGGCCATGGCCCCTGCAATCATGCATGTAGCTCCGCCAGTGCGTGTACGTGCTTTGTGTGTGCCCGGCTAGA
TGTACGTGTCGAGCTGTTGGGTGTATGTGTCGGACTGTGTGTACGTGCCCGACAGGGTGTACGTGTCGAACCGTGTATGA
GCCCGACTGCATAAGGTTTGAGGGTCCACGTTGAAGACGCCCTAAGATAAACGCTAAAAATAATAATGCAGGAACAATCA
TTACCAGGGAATGTGCACTATATGCATCTAGTAGTACAAATAAATAAACAAACAAATGTGCACTCCATTGATAAACTTTT
ATAGTAATAACAACTCTTACACAAGCGATTTTCAGTAAGTTGTTTTCTTCATCAGGGCACATACAAGATGGTACAAAT-A
TGAATGAAATTCAGTTGCCAATCAGCAACATACAGTGCGAGCGAAGCCAAAATGCTAGTACTCCCACGGATCACGATCCG
TGGCCAA-CCCGCACAAGCGCATCTGCACCGTCAGT------CCATCCCTGATCTAACGTCTCACCCAACCCCGCGCGCC
CC-TCCCTCCGTGGCGCCTTCACCCCTCCCAAACCCAAAAATTTCCGCTCC--ATCTCCCACCCGCGCGCGCCATGCCCC
AAATTCCCACCCCTGCTACTTAAACCCTCCGCCGCTCCCCACGAATCCTCACAACTCAGCCAGCCGCACCGCCCCCGCT-
-----CCCTCCCAAGAATCCCCCACCGCAGTCCCCCGGCAGCCCCCGCGCG---GCTCCGATGGCCCGCACGAAGCAGAC
GGCGCGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCG
GCGGCGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAG
CTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAG
CTCCGCCGTGTCGGCGCTGCAGGAGGCCGCCGAGGCGTACCTGGTGGGGCTGTTCGAGGACACCAACCTCTGCGCCATCC
ACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCTCGCCGCATCCGTGGGGAGCGCGCCTAGGCCTCTCTG
CCTCTGCGTCACGCCTGCCGCCGCGGTTCCTTCCTGGTTGATCCCGCCGACGGATTTGTTCTGCCCTGTTAGTCTAGTCT
CGTCGTGCTTCGAGTTGTCATTAGAATTTGTTCTGTTCTATTAGTCTCAC--GCTGTTGATTACCCGCTCG-AAAATTGC
AACGGAGGTGATGCAATTCATCTTAATTTCCGAGTTCATGTTGATTGCCCATAGTATTTTCTTTGATTGGATGTTTATAT
TTGGTGAGTGATCTCGACCTGGGACTGATTTCTGGGCTGGAGTTTTGCTGGCCGTGCTTGCTGCTTTCAGATGGCTCTTG
CGCGTCAGACATTTGCTGCAGAGATTGCAATC---TTTTTTTGTACATTTTGGCG-TGATCTTTTCACTACCATCCATTC
GGCCAAACAAGGACACGTCAGGTGGTCCATTATAAGCAAAACCAAACAAAATTCGACCTGAACTTATTTCAAGGTCATAT
TCCATATTGTTGTGCTT-TTCCTTATGATGATTCATCGACAGGGTTCATAATTTGGTTTAATCAATGCTGTGCCTGACTT
TTTTTTTGAGCTAATCTGTACTCTTTATTAAACATTCAAAATCAGCGGAATACAGATAATTTCGGGCAAAATAGCAAGCC
ACACACGGCGCCCGGGAGGGAGAGATGCAGCAGCCTTGGCTAAGGCATGGGTCTCTCCATTATGTCTCCTCTCGTAAATA
AATTCAACATCACTAAAAGACCTCCTTTGATGCTTGATATCTTGTAGAATTGGAAAGAACCTGCACGGGGAGTCATTTGC
AATCCTAGTCACAACTTCTTGACAGTCTGACGTCACACATACGGATCGAACGGGTAAATCCAAAGCGAGTGCTAGCGTCT
CGCTGCATGCCTGTGCCTCAAGAATTGCCGGATCCAAAAGACCCTAAAAAATGACGGCAGAAGCGCCAAGATATTTACCA
TGCTTGTCTCGGCACACAACGGCTGATGCGCCCTTATCC
>chr7A_540
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-----------------------------------------------------------GCACTCCATTGATCAATTTT-
---GTAATAACAACTCCTACACAAGCGATTTTCAGTAAGTGGTTTTCTTCATCGGGGCACATACAAGATGGTACAAAACA
TGAGTGAAATTCAGTTGCGAATCAGCAACATACAGTGCTAGGGAAGCCAAAATGCTAGTACTGCCACGGATCACGATCCG
TGGCCAA-CCCGCACAATCGCATCTGCACCGTCCAT------CCACCCCTGATCCAACGTCTCACCCAGCCCCGCGCGAC
CC-TCCCTTCGTAGCGCCTTCATCCCTCCCAAACCCAAAAATTTCCGCTCCAAATCTCCCACCCGCGCGCGCCAT-CCCC
AAATTCCCACCCCTGCTACTTAAACTCCCCGCCGTTCCCCACGAACCCTCACAACTCAGCCAGCCACACCGCCGCCCCTC
TCCCACCCTCCCAAGAATCCGCCACCGCAGTCCCCCGGCGACCCACGCGCG---GCACCGATGGCCCGCACGAAGCAGAC
GGCGCGCAAGTCGACGGGCGGCAAGGCGCCGCGGAAGCAGCTGGCCACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACTG
GCGGCGTGAAGAAGCCGCACCGGTTCCGCCCGGGCACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAG
CTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGAG
CTCCGCCGTGTCGGCGCTCCAGGAGGCCTCCGAGGCGTACCTGGTGGGCCTGTTCGAGGACACCAACCTCTGCGCCATCC
ACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGTGGGGAGCGCGCCTAGGCCTCTCTG
CCTCCGCGTCACGCCTGCCGCCGGTTTTCCTTCTCGGTTGACCCCGCCGAGGGATTTGTTCTGCTCTGTTAGTCTAGTCT
AGTCGTGCTTCGAGTTGTTATTAGGATTTGTTCCGTCCTGT--CAGTCTGGTGATGTTGATTACCGGCTCG-AAAATTGC
AATGGAGGTGATGCAATTCATTTTAATTTCGGAGTTCACGTTGATTGCCCATAGTATTTTCTTTGATTGGATGTTTACAT
TTGGTGAGTGATCTCGACCTAGGACTGATTTCTGGGCTGGAGTTTTGCTGGCCGTGCTTGCTGCTTTCAGATTGCTCTTG
CGCGTCAGACACTAGCTGCAGAGATTGCAATAGTTTTTTTTTGTACATTTTGACTTTGATCTTTTCAGTACCATCCATTC
GACCAAACAAGGGCACGTCAGGTGTTCCATTACAAGCAAAACTAAACAAAATTCGACCTGAACTTACTTCAAGGTCATAT
TCCATATTGTTGTGTGTGTTGCTTACGAGGATTCATTGACAGGGTTGATAATTTGGTTTGATCGACGCTGTGCCTGACT-
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>chr2A_696
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--------------------------------------------------------AGTGCTACCACGGATCATGATCCG
TGGCCAGCCCCACACAAACACATCTCCACCGTCTCCCATTCCCCACGCCCGATCCAACGGCTCAGCCGCGACGCGCTCCT
CGATCCCTTCATGGCGCCATTATCCGTCCAAAGCCCGAAATTTT-CGCTCCCATTTTTCAACC--CGCGCGCCAACCTCC
AAATTCCCATCCCTACTTAGCCATCTACCTGCACCGCAGATCATCAGAAC-------------CCACACCGCCG------
TCCCAATCTCCCACCAAGAAACCACCGCACTCCCGCCCAGGCCGCCGACCTCCAGCTCCGATGGCCCGCACGAAGCAGAC
GGCGCGCAAGTCCACCGGCGGCAAGGCGCCGCGAAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCCGCCCCGGCCACCG
GCGGCGTGAAGAAGCCGCACCGTTTCCGCCCTGGAACCGTCGCGCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAG
CTGCTCATCCGCAAGCTCCCCTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAG
CTCCGCCGTGTCCGCGCTGCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACACCAACCTCTGCGCCATCC
ACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGGATCCGAGGGGAGCGCGCCTAGCCTC-----
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>chr7B_995
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------------------------------------------------------GCTCCGATGGCCCGCACCAAGCAGAC
TGCCCGCAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCGGCCCGCAAGTCCGCCCCGGCCACCG
GCGGCGTCAAGAAGCCGCACCGCTTCCGCCCGGGAACCGTCGCCCTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAG
CTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGGGAGATCGCCCAGGACTTCAAGACGGACCTCCGCTTCCAGTC
CTCCGCCGTCTCCGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCC
ACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCACGCCGCATCCGCGGGGAGCGCGCCTAGGCTGTTCGT
CCGGCCGCCA-------CCGCCACGGTTCCATCCTGGTTGATCCTGATTGGATTCGA--TCCGTCCTGTTATTCTAGTCC
ACCCGTGCTTCGAATTGTTACTACTAGGTTCTAGTTCAAGTAACGGTCGTTTGCTGTTGATTACCAGTTGGAAAAATTGG
AAAGGAAGTGAT--------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S---S
SSS-------------S-----------------------S------------S-----------------------S--
---S--------------S-------------------S--S--------------------S-----------------
-----------------S---------------SS----------S--------S-------------S-----------
--------S-------------S----------------------------------------------------S----
-------------------------S-S-----------------S-------------------S-------S--S---
--------------------S------------------S----------------------------------------
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-------------------------------------------S------------------------------------
----S---------------------------------------------S-----------------------------
S-----------------S-----S--------S--S--S-S-SSS--SS---------------S--------------
--S------------------S--------S-------S--------------------------------------S--
--------------------S---------------------------------------------------S-------
-----------S-S-----------------S--------------------S-S------------S------------
-S----------S-----------S-------S---------S-----------------------S-------------
--------------SS----S----S--S-------S---------S------------S---S-S-------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_330
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----------------------------------------------------------------------CCCGGCTAGA
TGTACGTGTC----------------------------------------------------------------------
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>reverse_2334
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-------------TGCCTCAAGAATTGCCGGAT-----------------------------------------------
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