>input_sequence_81228
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-----------------------------------------------------------------------------ATG
GCGCGTACGAAGCAGACGGCCCGGAAGTCGACCGGCGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCACGGTGGCGCTGCGGGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCATTCCAACGCCTGGTGCGGGAGATCGCACAGGACTTCAAGACG
GACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGAGGGGAGC
GCGCCTAG------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G063000
AGTACTACTAGTCCAAACTAGATCAAGTTTGGATCAATAGTATACTTTTGACATGGACCACACATTGCCTCCACTTGAAC
CTAATCCACCTTCATTTGACACACTATTATGGACATAATGATGTAAACCTCATAACTGGTATTGTATCAATATTTGTACG
ATGACGCATAAATACACTAAAAATAAAAAAATAAAAAAAGAATACTAATAGCAATGGACAGAAAACACGTTGTCAGTAGT
TACATTAGCAATAGTGTGGGCTTGAACAAATGCTGCAGCTATTTGTCCTATCAGTAGCGCGTGCGGGCACGCGCTACTGC
TAAGTAATAGCTGTAGCGCCTTATTAGTAGCGCGCCTGCCCGCGCTACTGATATATCTGAAATCCGCGTTGTTGCTAGCC
TTTTTCCTAATAGTGTAACTTTGTAAAGTTAGTATAAAATTGAGTCATGTATCTCGGAACGGAGCGAGTAGTATTCAGCC
CGGGAATTGTAACCAACCAGCATATGTGCTGGCACCCTATGACGGTCGAAACATCCCGGATGGCCAGTATGTGTGGCTCT
CGGGGTTCCCTGTAGATGTAATCCGAGCTGTCACCGTAACCATGGAATGCAAGGTATTTATTTATTTTTTAAATGTCAAC
TCACTGGGGCGATAAACTAACGATAACGAGACGGCAGCCCATTTATGCATGGACACGTCAGCGATCCACACCTCGTCGGG
GGCCTCCCACCAACTAGCGCCGAGGACGCGGATCGTGTGCTTCGCCTCGGCAACCCACAGCCGTCCGATGCAAAT-----
--------------GAAACTTTTTCCCAGACGATCGGAAGAAGAAACCGCGTCGGCCACGTTTCCCCTG-CC--CACCCG
TCACCTATAAA-TTCCCACCGCACTTTCCCTCGACTATCCTCAGTACACAATCCGTTGCCTTCCAGTTCGATTTCGAGTT
CCCCAA---------ACCGCAGCGCGCGCAAGTCGAAGCCCAGTTCGAATT---CGCGGAGAAGGA-GAGGGA-TCGATG
GCGCGTACGAAGCAGACGGCCCGGAAGTCGACCGGCGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCACGGTGGCGCTGCGGGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTGATCCGCAAGCTGCCATTCCAACGCCTGGTGCGGGAGATCGCACAGGACTTCAAGACG
GACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGAGGGGAGC
GCGCCTAGATCAGG------------------------------------------------------------------
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------------CTTAGCAACTTCCGTCGCGGGATTGCTGCAA-----TGT-----------------------------
-------------------------------------------------------------------AGCTGTCCGTTCG
TTGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAATAGGCGACTTCTATTCTGTTGTAA-AAAAAGAATTCTGGTTGGT
TACATTGTTACAATGACTCGTCTT---------TCCATATGGTTTGTTTGTGCTAAAATTGCAAACAAATGCTTGTGAGT
TGTGACCATTATCGTTTCCAAGGAAGTGCTGAGTTTCAGCCTCATGTTCTTTGATCCTGGTGAACTTTGCTGCTGCACTG
TATATTATTTGTTCTTCACAGTTTTGTTGCTGTGGCGCCGTTTGGCCTTGGGATTGAAGTTTCGCGGCGGCGGAGATTTT
TTTTTATTTTGGTGCCCACGTGGAACATGGTTGTTATGCTGATCTTGTAACAGCGCGAAGATTTGTTGGTTTTCTTGAGC
AGTTCTGTAACTGATCGCTTCAGTAATAATTTGGAGAATTCGAGATTTTACCTTAGTTGGACAACTGAGACACAACAATT
CTGTTTGTATCCCATCATTTTTAGAGTGGACACTCTAAATATCCTTACTAGGTTTTATTGATTATGTTATGCCTCCCATC
ACTTAAAACCTCCAGTCCCTGCCTCCAACTATCCTTGAAATTCTGCCTTTTATATGGTCGCGTACTCTCGAAAAGAGAAG
TTAGTTGAGGAGCCAAAACTAAGGCGGATGGCTGTGGAAGGTGTGGCGATTGCGGTCGAATTACTTGAAACGGAATAAAA
AATCCAGGGTGTTGCACCTGTGGTTGCAACATTGGACCATAAATTCGACCTAGAGCTACATTTTCTCTCATTGCTCCATT
CGATGCATTCCCTAATACCTTCCATTCCTAATTAGCCTCTCAATGTCGCATCAAGATGCATTTTGTAACTGTACCAAGGT
TCACATTGGTGAAGAAGCAGAGCTACGCAACGACTTCTGTTGATGATAGGTCACGACAAATTTATAGGGTACCTCGC
>chr7A_666
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-------------------------ACGAGACCCCAGCCA---TATGTATCGCCAGGTCACCGATCCGCACCTCGTCCGG
GATCTCGCACCAATCAGCGCCGAGCACGCGGATCGTGTGCTTCCTCCCCGCAACCTCCAGCCGTTAGATCCAATCAATCA
CCCAAACGCAATCCGAGACCCTCTCCCCCACGATCG---GAAGAAACCGCCTGGGCCACGCTTCGCTTG-CCCACACCCG
TCACCTATAAA-TCCCCACCCCACTTCCCCTCTTCTTCCCTCACTACAGAATCCGTCGCCTTTCACTTCA------AGTT
CCCCAA---------CCCGCAGCGCGCGCAAGCAGAAGCCCAGTTCGAATT---CCCGGCGGCGGAGGAGAGA-CCGATG
GCGCGTACGAAGCAGACGGCCCGGAAGTCGACCGGCGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACGGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGGACCGTGGCGCTGCGTGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCCCAGGACTTCAAGACG
GACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGC
GCGCATAGATTGCCCAAGGAAA----------------------------------------------------------
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---------------------------------------------------------AGCAATGTAGAGCTGTCCGTTCG
TCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTTGTTGTAG-AAAAA--ACTCTGGTTGGC
TACATTGTTACAATGACACGTTTCT-TATTTCGTCTATATTGTTGGTTTGTGCTAAAATGCAAACAAATGC---------
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>chr7D_684
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-------------------------------------------TATGCACCGCCACGTCACCGATCCGCACCTCGTCGGG
GATCTCGCACCAGTAAGCGCCGAGCACGCGGATCGTGTGCTTCCTCCTGGCAACCTCCAGCCGTTAGATCCAATCAATCA
CCAAAACGCAATCCAAGACCCTCTCCAACACGATCG---GAAGAAACCGCCTGGGCCACGCTTCCCTTG-CCCACACCCG
TCACCTATAAAATTCCCACCCCACTTC---TCTCCTCTCCTCACAACCCAATCCGTCGCGATCCACTTCA------AGTT
CCCCAAATCCCCAACCCCGCAGCGCGCGCAGGCCGAAGCCCGGTTCGCAGT---CGACGAGAAGCAGGAGAGA-TCGATG
GCGCGTACGAAGCAGACCGCCCGGAAGTCTACCGGCGGCAAGGCGCCTCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACCGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCACGGTGGCGCTGCGTGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACG
GACCTCCGGTTCCAGAGCCACGCCGTGCTGGCGCTCCAGGAGGCTGCCGAGGCGTACCTCGTCGGGCTCTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGC
GCGCCTAGATCAAGCATC--------------------------------------------------------------
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---------TGCCTTGGCAACTTCCATCGCCGGATTGCTGCAATGTAGTGT-----------------------------
-------------------------------------------------------------------AGCTGTCCGTTCG
TCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAATAGGCCACTTCTATTTTGTTGTAA-AAAAGT-ATTCTGGTTGGT
TACATAGTTACAATGACTCATTTCCATATTTCGTCTATATGGTTGGCTTGTGCTAAAATGCAAACAAATG----------
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>chr7B_805
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-----------------------TCCCACACGATCA---GAAGAAACCGCCTGGGCCACGCTTCCCTTG-CCCACACCCG
TCACCTATAAA-TCACCACCCCACTTCCTCTGTTCTTTGCTCACAACCCAATCCGTCGCCTTCCAGTTCA------AGTT
CCCCAA---------CCGGCAGCGCGCGCAAGCCGAAGCCCAGTTAGAATT---CGCGTAGGAGGAGGAGAGATCCGATG
GCGCGCACGAAGCAGACGGCCCGGAAGTCCACCGGCGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACCGGGGGCGTGAAGAAGCCCCACCGCTACAGGCCTGGCACGGTGGCGCTGCGCGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACG
GATCTCCGCTTCCAGAGCCACGCGGTGCTGGCGCTCCAGGAGGCCGCCGAGGCGTATCTCGTCGGGCTCTTCGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCGCGCCGCATCCGAGGGGAGC
GCGCCTAGATCAAGCATC--------------------------------------------------------------
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---------TGCCTTAGCAACTTCCATCGCTGGATTGCAGCAA-----TGT-----------------------------
-------------------------------------------------------------------AGCTGTCTGTTCG
TCGCCTCTGGTTTCAGATCGTGTTGGCAA-------TAGGCGACTTTTATTTTGCTGTAAAAAAAA--ATTCTGGTTGGT
TACAGAGTTACAACGACTCATTTTCTTATTTCGTCTAA------GGCTTGTGCTAAAATGCAAAACAA------------
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>chr7D_821
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---------------------------------------GAAGAAACCGCCTCGGCCAGGCTTCCCTTCCCCCACACCCG
TCACCTATAAAATTCCCACCCCACTTCCCCTCTCCTCCCCTCACTACCGAATTCGTTGCCTTCCACTTCA------AGTT
CTCCAA---------ACCACAGCGAGCGCAAGCCGAATCCCAGTTCGAAGTCCTCGACAAGGAGAAGGAGAGA-TTGATG
GCGCGTACGAAGCAGACCGCCCGGAAGTCCACCGGCGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCGAGGAA
GTCGGCGCCGACCACGGGCGGCGTGAAGAAGCCCCACCGCTACAGGCCCGGCACCGTGGCGCTGCGCGAGATCCGCAAGT
ACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGGGAGATCGCGCAGGACTTCAAGACG
GACCTCAGGTTCCAGAGCCACGCCGTGCTGGCCCTCCAGGAGGCCGCCGAGGCGTACCTCGTCGGGCTCTTTGAGGACAC
CAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATTCGCGGGGAGC
GCGCATAGATCAAGCGTCTGCCTACTCGACTTAGGCCTTGTACAATGGGAGGTGTTTAGAGAGATGCTTAGAAAAATAAA
TCGGGTTTTTCTGAAGCACCGGTACCTATTTCTATAGAAATAGAAAAATAAATCGAGTTTTTTTGAAGCACCGGTGCCTA
TTTCTACAGGAAGGGTCTTTCCTGTACAAATAAGCATCGGCACTTAAGAAAAGCCTCGTTTATTTCTCGAAACACCTCCC
ATTGTACAATGCCTTAGCAACTTCCGTAGCCGGGTTGCAGCAA-----TGTAGAGCTGTCCGTTCGTCGCCTCTGGTTTC
AGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTTGTTGTAGAAAAAGGTTACAGCAATGTAGAGCTGTCCGTTCG
TCGCCTCTGGTTTCAGATCGTGTTAGCAATAGGCAAGAGGCGACTTTTATTTTGTTGTAG-AAAAA--ACTCTGGTTGGC
TACATAGTTACAATGACTCATTTCC-TATTTCGTCTATATGGTTGGTTTGTGATAAAAATGCAAACAAATG---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------SS-----SSSS-------S-S-------S------S------------
-SS---S------SS---------S------------------SS-S--------SS-------SS---S---SS-----
----------------S--SS-S-----S-------SSS-----------S---------S-----S-------------
--------------------S-----S-----SS--S------S-------------------------SSSSSSS----
--------------------------------S-------------------------------------S---------
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------------------------------------------------------------------S-------------
----------------------S--------------S-----S--------------------S---------------
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------------S-------------------------------------------------------------------
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------------------------------S-------------------------------------------------
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-S-------------------------------------------------S--------------SS------------
---------------------S-------------S--------S--------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_576
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----------------------------------------------------------------------------CTCT
CGGGGTTCCCTGTAGA----------------------------------------------------------------
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>reverse_2525
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--------------------------------------------GGCGATTGCGGTCGAATTAC----------------
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