>input_sequence_81216
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-----------------------------------------------ATGACCAGAGATAATCTGCTGAAAAGGAACTTA
CATAAATTCGTGGATTGTGTGTTCTATTCTAAGCTTGAAAGTATCCAACATCTTTTATTTGAGTGTGTGGTTGCCCAACA
TATTTGGCAGGAGATTAGCTCTTTCTTTAATATGCAGCT-----------------------------------------
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----------------------------------------------------------------------GGGAGATTCT
GTCACTAGTATTTCCTCTCTTTGGGTGGTTGGAAAAAGATTAGATGCTTCAAATACTGTCTTTGTTGTTGCTCTTTGGGC
TTTACGGAAGCACATAAACAGTTTGGTGTTTAATG-----GTGTGCCTTGGCTGTCTCTTGAACAGATTTGGTCGCTTCT
TTCAAGAACAATCAAGAAATTGCGCGTGCTCTACAAGGATCACATGTTGAAGATGATAGACTCGTTCTGTCTCCACCTCC
AAAATCTGCTGTGA------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G179800
ATGTGAAACTTGCTGCTGGTGCAGTTGTGTAATGGGGTAGCTGGGTGCTGAAGCTATATCATGTTGTACTCTGATGTATT
TCAATTATGAAATACTACTTCCTTAATATGGAAATGGAATATATTATGTGCTTAATATGAATGTCAATTAGATTAGTGAA
TGGATTATTAATAATAGGGCAATTAGCCCACTAATTGGCCAATTAGCTTGCTAATTGGGTTTTCCTATTGCAAACGACTA
TTGAGAAAACACCATGGACGATGACCTCAGGCAACGCACACAGATTCTAGGAATAAACCGTGTTGGATCAATGAACAATC
ACACACGACATTCTCTTGAAAACTGTTTGC-TTACGCCACCTTGTGCAAACGTTTTCCTTGGAGTGACTGTGTGGTGTGT
ATATACGAACGGAAACATTTAGCGGTGACTGACTGTGTGGGATGTACTTACGACCGAAAATGATTTCGCATAGGGCTCGC
CGGTCGCACACGACCTTATTTTGCCGAGCGTGTGTGCAAGGAGGGCATATCCCCGACGGTTTCCGGGTCGTGTGGGAAGG
ACCCCCCTATCGCCCACACTCACTAGGTGACGGTTCCGAACACCGTCGCGGAAAGGGGTTAAAAACCATTTGTATATCAC
CGACGTGTACCAGTGTTTGTCTGTTCAATTCTGAGATCTTTACTGCAATTGCAGAGAGCAGGGTAAAACCGTTAGTCAGG
TTTTAGATAACAATGTGATAAAACTCACATTTAGAAGGGCTTTCTCCC---CTTTGATGAATATGTGATATGAACTGGAA
GTTGTGGCCTCGAGTATTACTTTTTCTGGTGATATAGATGCCCTGGTCTGGCAATACACTGCATCTGGGTCATATTCTAC
CAGTTCTCTATATACTATCATCAACTATAGAGGAGTAACTCCAAGTTTTATTCAT---GCTATCTGGAAATTGATTGTAC
CACCTAGGATTCACATCTTTCTATGGTTGTTTGCCTACAACAAACTTATGACCAGAGATAATCTGCTGAAAAGGAACTTA
CATAAATTCGTGGATTGTGTGTTCTATTCTAAGCTTGAAAGTATCCAACATCTTTTATTTGAGTGTGTGGTTGCCCAACA
TATTTGGCAGGAGATTAGCTCTTTCTTTAATATGCAGCT-----------------------------------------
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----------------------------------------------------------------------GGGAGATTCT
GTCACTAGTATTTCCTCTCTTTGGGTGGTTGGAAAAAGATTAGATGCTTCAAATACTGTCTTTGTTGTTGCTCTTTGGGC
TTTACGGAAGCACATAAACAGTTTGGTGTTTAATG-----GTGTGCCTTGGCTGTCTCTTGAACAGATTTGGTCGCTTCT
TTCAAGAACAATCAAGAAATTGCGCGTGCTCTACAAGGATCACATGTTGAAGATGATAGACTCGTTCTGTCTCCACCTCC
AAAATCTGCTGTGAGGGACAATGGTGATCAGGATGGGGTAGACACCTTCAAGGAGATCACGTCTCCACTCAAGCTGAGGG
GAGGAGGTGTTGTTGCTGGGCAGAGCCCCGTCTCTGTTCTGGAGGTCCTGAGATCTCCAACATCCCTCCTATCATGAAAG
TGAAAGTGGAAAGTGGTCCTATTAAGTTGTCACTTATCTCAATTTAATTGTCTTGTGGTGTCAGCCGTGAGGGTGCCTAC
TGTTATCAG-CATTTTCGCTGTTTTAGCCATTACACTCTTTTCTTCTACTATCTTTTCATAATGTAGCAGACCTGTTTTT
GCGGGCTTCTTTCTAAGTAATGGAGCCAGTGAACCCCTCTCAGTTGATCTAAGAAACCTAAATGCCCCTGACCCCGTACA
TATAGCGGCGGAGAGGCGCATATCCGGGTCCCTTCATA-TTTTTTTACACGACGACGAGCTTTTAGTGGATCTATTCGGA
CCGTAAAACAGTCAAAACCCGCATATTGTCTGAAAATTTCCGGACAGATGAACTTTTAGCGGATACTAACGGTAGAGATG
CTCTTAATGAAAAAGCAGCAACTTGCCATGTTTCGTCAATTTTCTTTTCTACATCAAACATATTATCTTATATAAGAGTG
TCTCCTAACTTCATGTTAAAAAAAGTCTCTTAATAAGCACCGTTCCTTATCTGATCGAACGATCAGAAGGAAAAACGCAG
TCCATCCGTGGATCTAAATCCTGTTTTCGACGAGGGCCAAGGACGGGCCAGAAACAAACAACACATTTGGCAATATTTGG
GAAGGGGATTGGAAGTTTAGCATAGGGAGTTATATTAAGATTAGACATGTGATGAGCCATTTTATTCCCAATCCCTATGT
GGTGCATGATAGGAATTATGTGTGGAAATTTAAGGAGAATTTTTATTCCTTTGTTTGGTTCATGGGAATTGACGAGAGAT
TAGACCAGGGAAGTGAACATAAAGGAAAAACTAACGCCCACACGTGTGACATCTTG
>chr3A_1
ATGTGAGACCTGCTGCTGGTGTAGTTGTGTAATGGGGTGGCTGAGTGCTAAAGCTATATCATGTTGTACTACGATGTATT
TCAATTATGAAATCCTGCTTCCTTAACATGGAAATGGAATATATTATGTGCTTAATATGAATGTCAATTAGAATAGTAAA
TGGATTATTAATAATAGGACAATTAGCCCGCTAATTGGCCAATTAGCTTGCTAATTGGTTTTCCTTATAGCAAACGGTTA
ATGAGAAAACACCGTGGGCGATGACCTCAGGCAACGCACATAGTTTCTAGGAATAAACCATGTTGGATCAATGAACAATC
ACACACGACATTCTCTTCAAAACTGTTTGCGTTACGCCACCTTGCG----------------------------------
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-------------------------------------------------CAAATGTTTTCCTTGTAGTGACTATGTGGGA
TGTACATACGAACGG-AAACGTTTAGTGTGGACTGACTATGTGGGATGTACTTGTGACCAGAAACGATTTGAGCGCTCGC
CGGTCGCACACGACCTCATTTTTCC-------------------------------------------------------
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GAGCATGTGTGCTAGGATGGCATATCCCCGACAGTTTCTGG---------------------------------------
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--GTCATGTGGGAAAGACCCCCCTATCTCCCATACTCACTTGGCAACGGTTCCAAATGCCGTCGCGGAAAGGG-------
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--------------GTTAAAAACCGTTTGTTTAGGACCGACGTGCACCAGTG----------------------------
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>chr6B_655
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---------------TTTTTCTGTTCAATTCTAGGATCTTTACTGCATTTGCAGAGAGCAGTGTAAAATTGTTAGTCAGG
TTTTAGATAACGATATGATAAAACTCACTTTTAGAAGGGCTTTATCCCCTACTTTGATGAATATGTGGTATGAACTGGAA
GCTGTGGCCTCGAGTATTACTTTTTCTGGTGATATAGATGCCCTGGTCTGGCAATACACTGCATCTGGATTGTTTTCTAC
CAGTTCTCTATATACTATCATCAACTATAGAGGAGTAGCTCCAATATAGTTTATTGTAGCTATCTGGAAATTGATTGTAC
CACCTAGGATTCACATCTTTCTATGGTTGTTTGCCTACAACAAACTTATGACCAGAGATAATCTCTTGAAAAGGAACTTA
CATAAATTTGTGGATTGTGTGTTCTATTCCGAGCTTGAAAGTACCCAACATCTTTTCTTTGACTGTGTGGTTGCCCAACA
TATTTGGCAGGAGATTAGCTCTTTCTTTAACATGCATCT-----------------------------------------
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----------------------------------------------------------------------AGGAGATTCT
ATCACTAGTATTTCCTCTCTTTGGGTGGCTAGAAAAAGATCAGATGCTCCAAATACTGTCTTTGCTATTGCTCTTTTGGC
TTTATGGAAGCACATAAACAGCTTGGTGTTTAATG-----GTGTGCCTTGGTAGTCTCTTGAACACATTTGATTGCTTCT
TTTAAGAACAATCAAGAAATTGCGCGTGCGCTACAAGGATCACATGCTGAAAATGATAGACTCGTTCTGCCTCTACCTCC
ATAATCTGTTGTGATGGCCAATGGTGATCAGGATGGGGTAGACACCTTCAAGGAGATCACGTCTCCACTCAAGCCGAGGG
GAGGAGGTGTTGCTGTTGGGCAGAGCCCCGTCTCTGTTATGGAAGTGCTGGGATCTCCAACATCCCTCCTATCATGAAAG
TGAAAGTGAAAAGTGGTCCTGTTAAGCTGTCACTTATCTCAGTTTAATTGTCTTGTGGTGTCAGCCGTGAGGGTGCCTAT
TGTTATCAGTCATTTTAGTTTTTTTAGCCGTTAGACTCTTTTCTTCTACTGTCTTTGCATAATGTAGCATACCTGTTTTT
CCAGGCTTCTTTCTAAGTAATGGAGCCGGGGAACCCCTTCC-GTTGATCTAAGAAACCTAAATGCCCCTGACCCCGTACA
TATAGCGGTGGAGAGGCGCATATCCGGGTCCCCTCATG-TTTTTCTACACGACAATGACCTTTTAGTGGATCTGTTCGGA
CAGTAAAATAGTCAAAACCTGCATATCACCTAAAATTTTCCGGACTGACAAGCTTTTAGCGGATACTGACGGTACA-ATG
CTCTTAATGAAAA-GCAGCAACTTGTTGTGTTTCGCCAATTTTCTTTTCTACATCAAACATATTATCTTATATAAGAGTG
TCTCCTAACTTCATGTTAAAAAATGTCTCTTAATAAGCATCATCCCTTATCTGATCGGACAATCAGAAGGAAAAACGCAG
TCCTTCCGTGGATCTAAATCCTCTTTTCGACTAGGGCCAAGGAGGGGCCAGAAACAAACAACGCGTTTGGCAATATTTGG
GAAGGGGATTGGGAGTTTAGTATAGGGAGTTATATTAAGATTAGAGATGTGATGAGCCGTTTTATTCCCAATCCCTATTT
GGTGTATGATAGGAATTATATGTGGAAATTTGAGGAGAACTTTTATTCCTTTGTTTGGTTCATGGGAATTGACGAGAGAG
TAGACTAGAGAAGTGAACATAAA---------------------------------
>chr6A_655
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---------------TTTGTCTGTTCAATTTTGGGATCTTTACTGCATTTGCAGAGAGCAGGGTAAAACTGTTAGTCAGG
TTTTAGATAACAATGTGATAAAACTCACATTTAGAAGGGTTTTCTCCC---CTTTGATGAATATGTGGTATGAACTGGAA
GCTGTGGCCTCGAGTATTACTTTTTCTAGTGATATAGATGCCTTGGTATGGCAATACACTGCATCTCGGTCATATTCTAC
CAATTCTCTATATATTATCATCAACTATAGAGGAGTAACTCCAATTTTTATTCAT---GCTATCTGGAAATTGGTTGTAC
CACCTAGGATTCACATCTTTCTATGGTTGTTTGCCCACAACAAACTTGTGACCAGAGATAATCTCCTGAAAAGGAACTTA
CATAAATCCGTGGATTGT--GTTCTATTCTAAGCTTTAAAGTATCCAACATCTTTTATTTGAGTGTGTGGTTGCCCAACA
TATTTGGCAGGAGGTTAGCTCTTTCTTTAATACTAGATCATTGATGGCGCGCGTTGCTGCTCCCATCCATTTTGGCATTA
TAGTGTTAGGGACTGATAAAAATATATGAAGCCATATAGTCTACTTGTTAAATTGAAACAACATGGCAATTCGTTTCATG
GTGTAGCCTTATGATGCAAAATTTCAAGAGTACTGCTATATGGAGAACTTCCCCTTGAATTAGTTACATGTACTAATAAG
TATTTATGCAAATATATGGTGGCATGATTGGGTGCCAATATGTTACATATTTAGGAGGGTCACTACGTAGCCCAACTGCT
GACATTACTTAGTTGGCGACATCAGTTAATACAATGCATAATCTGACAATTGACAACTCGTTACATAAGATTAGTCCCAT
CAGATTTACTCCGTGTTCCTCAAAATATAGTTCCCACCATCATGAATGTTTTGAACATAAATTTATGCATAGTTGATCAT
GACAGCACATTTCTTAGTATCATATATTTCTTGAATGTTAGCATAGGTCATGCAGATAAGGAAACAGATTGTTTAACTGC
ATCATAAAGAAAAGATTCTCTTGAAACTTCACGTCAGTAATACTCATGCATTTCAAGCATATGAAGTGGCAAACTCCTTG
GTATCAACTTTGTATCAGTAGATGGTATCAGAGAATAAGAGAGAAAGCTTATTATAACCTTACATAATAAAATTGGTAGA
GAAGTGACTCACAACAATTGGGTCATCTTGTTATCATAACACTTATCATCAAATCGGGAGCCCCCCTGGCTCTCCATTCA
TGCGCCATGGTTGTATTAAATAAAAACATGAGCATGTTTTTTAGGGGGGGGGACATGAGCATGTTAGAGACAAACGAACA
TTTCAAGGATACTGAAAGCTATAGTTAATATCATTTACCAAAGATAGTCACTTTTTCTTTTAAAAACACACAACCTGTAG
AGATAGCAATAGGCTTACGCAAAAAAAAACTATAAATCACCAAAAGTTGGCAAAGCTGAACGACCAAATGAAACACATAC
TGCAATGCTACATCATATGGACATAGAATATAATATCGTTGAGAGATTTTCGTGGAAAGAAAAATGTTAAGAGATAGTGG
TGCAGTCAAGCTATGGAGCCAATTACTCTAATTGCAACATATTACTCAGGACGGCCCCTAATTTGATCTCTAGCAAGCAT
GAATTGTTTCACAAGTGGGTTCACATATGCATTACTTTTGTAACAATAGTCTGATCCAATACACAGTTAATATCTTCATC
TTGCTTACACAACCCTTCTATTTTATGCTCGATTAACGATCAATATCTTATATGTATAGTCAAGATGTTGTCGTTTTCAT
CGCTGTGAAGTTTGCTTTGCTAAGTATCTACAACATTTAATATTTCATTTGCTCATTTTTTGTGAACAAACTTGCATACA
GCAAAAACAACAGCCGGTAGCTAGTGCTATTTTATTTCAATCAAAGTCACACTCACGAGTGGCATTACATAGTAATATGA
CTTGGATACTAACCTGGCCGACTGGAGCGGCAAGAGAGAACCCAACACCCAGCAGAACATAGATCAAACCCAACAATTCA
GAGCACATGCACTGGAGTAAGCAAAACAACGTCAACAAATGCATCCAGGGAGTTGCCAACATCACGTGTCAAATAAAATC
AAGGTCAAGTGCTCCACACCACTGACCTCATCTATAGATGCAGATCTGTACCAGCTGACATGATGCATACATGTCCTTTT
GTCGCATGCCCTGCTACACAAATCAACAATTAACAGATCACATGCATCGATAGTAGAATGGAATGAAAAGCAAACATCAT
GTGGCTTTGAGGAGGGAGATTATACCAATAGATAGAAGAATAAGAACCACCATAAGGAAGCACTTTTAACATCGATCGGC
CTGACCAGTCGCCCACACCCTTAGTGAAAAACATTCTCCACCTACAGAGCGAGAAGGGAGGAGGAGGAACCACTCCGGCT
GAGCCAACCCGTGTCTCCTGAAAGAAAGGAGTCAAGCCTGATGGGAGGATTTGAGATACACGCCCAGCCACGCCATAACC
ACGTCATCGGAAGGGGGAGGAGAGGTGACGAGATGGATTGTTACACGAGGAAGACTAATAGATCAAGACAAAATATCTCC
CGGTCCACTATAGGCATATTGTGTAAGGGGGTGAACTGTACTTGCAGGGAAGGAACAACGGGTGTGGAGGGAGGGCAAAA
GCGCGGCGACCATCTTGGATGTAGCTCGCCTGGGACGCCGGTTCTACCCGCAGCGCCGCCAAGTCTTCATGGGCTTTGCC
GCTCGGGTTCATGGTCGGAGGAGTGGGACGCGCGCGTCATCATGGTGCTAATCCGGATCTCTGGGATTGTCCGTCATCGT
TGTTCACTTCACCTTCGCCGACATGGGGTTAGGTCTGGAGCGTGATTGGATGGATGCGGCCGGGTGAGGGAAGAAGGTGC
GGAGTCGCTGATTCTGGATCAGATGGCTTTTGGGCTGGGAGGCCCAATCAACCACATTGCTTGGTTTTTTCTCCCGGAGT
AGCGTCCACTTAGGACAGCCCGCAAACGGTGCATTAAGGGCAGATCTACGGCCAGAGACCATCCATATGCGAAATCGAAT
GGTTAAAAATACGGGTAGCGTGAGAGAGCTCAGATTAGGCTCGCTTATACTGTCCTAAATAAATGGATCCGGGAGATTCT
GTCACTAGTATTTCCTCTCTTTGGGTGGCTGGAAAAAGATTAGATGCTCCAAATATTGTCTTTGCTATTGCTCTTTGGGC
TTTATGGAAGCACATGCACAATTTGGTGTTTAATG-----GTGTGCCTTGGCTGTCTCTTGAACATATTTGATCGCTTTT
TTTAAGAATAATCAAGAAATTGCGTGTGCTCTACAAGGATCACATGCTGAAGATGATAGACTTGTTATGTCTCCACCTCC
AAAATCTGCTGTGAGGGACAATGGTGATCATGATGGGGTAGACACCTTCAAGGAGATCACGTCTCCACACAAGCTGAGGG
GAGGAGGTGTTGTTGCTAGGCACAGCCCCGTCTCTGTTTTGGAAGTCTCGGGATCTCCAACATCCCTCCTATCATGAAAG
TGAAAGTGGAAAGTGGTCCCGTTAAGCTGTCACTTATCTCAGTTTAATTGTCTTGTGGTGTTAACCGTGAGGGTGCCTAC
TGTTATCAGTCATTTTAGCTGTTTTAGCCGCTAGACTCCTTTCTTCTACTATATTTGCATAATGTAGCAGACCTGTTTTT
GCGGGCTTCTTTCTAAGTAACGGACCCAGGGAACCCCTCTTTGTTGATCTAAGAAACCTAAATGCCCTGA--CCCGCACA
TATAGCCGCGGAGAGGCGCATATCCGGGTCCCCTCATGTTTTTTTTACACGACGACGAGTTTTTAGTGGATCTGTTCAGA
CCGTAAAACAGTCAAAACCCGCATATCGTTTGAAATTTTCCGGATCGATGAGCTTTTAGCGGATACTAACGGTACAGATG
CTCTTAATGAAAAAGCAGCAACTTGCCGTGTTTCGTCAATTTTCTTTTCTACATCAAACATATTATCTTATATAAGAGTG
TCTCCTAACTTGATGTTAAAAATTGTCTCTTAATAAGCACCGTTCCTTATCTAATCGGATGATTAGAAGGAAAAACGCAG
TCCTTCCGTGGATCTAAATCCTCTTTTCAACCATGACCAAGGAGGGGTCATAAACAAACAACGTATTTGGCAATATTTGG
GAAGAGGATCGGAAGTTTAGTATAGGGGGTTATATTAAGATTTGACATGTGATGAGCCATTTTATTCCTAATCCCTATTT
GGTGCAT-------------TGTGGAAATTTGAGGAGAATTTTTATTTCTTTGTTTGGTTCATGGGAATTGACGAAAGAG
TAGACCAGGAAAGTGAACATAAA---------------------------------
>SNPs
------S--S-----------S----------------S----S-----S--------------------SS--------
-------------S--S---------S---------------------------------------------S----S--
------------------S----------S----------------------------S---S-S---S-------SS--
S------------S---S----------------------S--S---------------S--------------------
-----------------S--------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------------------S-------------S---------------------S----------
-------------------------------------------------------------------S------------
-S------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
----------------------------------------------------------------S---------------
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----------------------------S-------------------S-------------------------------
-----------------------------------------------------------------------S--------
--S-------------------------------------------S---------------------------------
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--------------------------------------S----S------S-----------------------------
--------------------S-----S--------------S--------------------------------------
----------------S------------S---S----------------------S-----------------------
-----------------------------S-----------S--------------------------------------
--------------------------------S----S-----------------------------------S------
--------------------------S--------S---------------S----------------------S-----
---------------------------S----------------------------------------------------
-----------------------S---------------------------------S----------------------
---S------------------S--------S-----------S------------------S-----------------
--------------------S---------------------------------------------------------S-
-------------------S-----------S-----------------------------------------------S
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_510
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----------CGACCTTATTTTGCCGAGCG--------------------------------------------------
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>reverse_4844
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-------------------------------------------CGGGCCAGAAACAAACAACA-----------------
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