>input_sequence_81212
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-----------------------------------------------------------------------ATGGCACCC
AAGGCGGAGAAGAAGCCGGTGGCCA------CGGAGAAGGCTCCAGCGGGGAAGAAGCCCAAGGCAGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCGGCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATC
TTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGAC
CTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CAGCCTAG------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G046600
CCACCTGAGGCGCAAAACTACGACGACCAAAGAGACTAGCGTAAAGGACCCTCATTTCCCACCCATGGGCAGCCCCAAGA
ACCCCCCCCCCCCACATGTCGTCCAGATCTGGCTGCCACTGCCCCGCGCTACCGCTCCCGGATAATGGACGAACTCACCA
GTGGCACACCACCAATCGAAGGGACGCAACGATGATTCCTTGGCCCTCTTGGCAAGGGAATCGTCCTCAATAGTGGACGA
TGATTGGGAGAGGACCAATCCTCCGGCGAAGACAGCATAAGCGCAACGAGGAAAGGAGACAGAAGCCGAAACGGTCCGCT
TGCTGACGAGCCGACGCCGAAGAAGCCAACTGTCACCGCAAACGGAACTGCCAAACTACCATGTAGCGGCGCGTTGTAGG
AAGGCCACCACACACTGGACCTCACCTTGCCATCCGCCCCACGGTTAGAGCAGCAACCACGCCAAGCTGTTGCCCCAACC
CGCGCCACCTGCCGGCCACAACAACAACAGGGACTCCCAGATCCGCCAGCAGCACGCCCCCGGGACCCCGGAGCCCCATG
AACAGGCCCGAGTGCCTGACGCCGCCGAACAGAAGGAGACGAAATGGGTCATCGTGTCGGAGTTGGCCTTAGTCCAACAT
ATTATGTATTAAAAAAGTGTAAATAACCAAATATACCTTTTTTACGGGAATAGCCAAATAC-AGTATACCTTAGTAGGTG
GCTGGTGATAAATGCCCAACAGATTTTGGCCAGGTCACCGATCCGCGCCAAAACGAACCCTGTCCGTCCATCTCAAACAC
CAGCGAACGGCTGGAACTACTCCGAGGCATCGATCCGGAGCACCAGCCCATCCACCAATCACAGCTCATCTCCTTCCTCC
TTCCACCTTCCTATTTAACGATCTC---------T-CCGCCTCCTCACATCACAGCATCTGCACACTCCGCCTCCCGCCT
CTTGCAGCCTAACCCCACCTCTCGAGTCTCGACACCCTCGAAT--------CAGCGT------------CCATGGCACCC
AAGGCGGAGAAGAAGCCGGTGGCCA------CGGAGAAGGCTCCAGCGGGGAAGAAGCCCAAGGCAGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCGGCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATC
TTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGAC
CTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CAGCCTAGGCTTCATC-------GGACGAATGGATGGTCGC---------------------------------------
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-----------------------------ATTCTGTATGTAGCTAGCTGCCAGTTTGTGTTCTGAAGATGTTATCTCGTG
AGAATCAAATTGTATCGCCTGTCGGTCTGAAGAAATAGTAATG-------------------------------------
--------------------------------------------------------------------------------
--------------TTCCTTTCAGTGTAACTTTCTGCCTTCGTCTGATTCTTGAGTCC----------------------
TGCAGATACAACCTCTGAAGTTGTAGAGAGATTGCTTTTGTTCTAACTATAATTC---TACA------------------
----------------------------AGAACTGTCCTTTG--TGTTGCGTTCCAGGCAGCTAGGCTTTGAATCTTTGA
CCAGGAGGCGTTGC--------------------------T---------------------TCCACGATTGACCTGCAG
ATTTTGTGTTCTCTGTTCCACAATGTGATCGAGACGTGACGGTTGCATATGCACAATGGAGAGGCTGAATAGCACTGACG
CGTAGGCACCTGTAGAA-GAAATTGTGTCAAGATGGGTGATAATTTTGGTGATGTTTATGCAAATTTGCTGAGCAAGCTC
CATCTGATGCAAAGGGAGTTTTGGTGAGTGCAGTTGATGAATCATCCCGGGTCAGGCGAGAATGAACACTGTAAATGC--
-----------------------------TACTCCTATTACTTACCATCATGC-AAAGAGTATCAGTTCAGAGCATAGTG
AAGTAGCAC--TAAAACGATCAG--------CAATGCCGTTACTCTTAAACTAATGTTGATCTCTTCT-------GTGGA
TCCACAAACAAAATGCAGACAGACAATTGTACCTGAGAGGGAGATCAGAGAACGTACACACTTGTTTTAGAATATAACTC
AGAGCAACTTCAACAAAGGTGCATCGATTTGACCCCCAAAAAAAAGGTGCATGGAGTACCCGTTTAGAAGAAGTTTGGGC
AAAAATGGTCTCGAACAGATTCCGTAAACATGGAATAAAGTTAGAGGATTATGTAAATTTGACATGAATTTCCCTCTAGT
CCAGGGGAAGTATTACATCCCGTAATATTTTGGCCAACTAAAACTTCAGGCCACCTCGCCGCTGCAACGCTGGGCAGTTG
CGCCGCCGCGGCCCCGCTGCGGTG
>chr6A_580
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-------------------CGCCGCCGAACAGAAGGAGAGGAAATGGGTCATCGCG-CGGGGTTGGCCTTAATCCAACAT
A-TATGTATTTAAAAAGTGTAAATAACCAAATATACCTTTTTTACGGGAATAGCCAAATACTAGTATACCTTAGTAGGTG
ACTGGTGATAAATGCCCAACAGATTTTGGCCAGGTCACCCATCCGCGCCAAAACGAACGCTGTCCGTCCATCTCAAACAC
CAGCGAACGGCTGGAACTACTCCGAGGCATCGATCCGGAGCACCAACCTATCCACCAATCACAGCTCGCTTCCTTCCTCC
TTCCTCCTTCCTATTTAACGATCTCGCCGCCTCCT-CCGCCTCCTCCCATCGCAGCATCTGAACACTCCGCCTCCCGCAT
CTTGCCGCGAAACTCCACCTCTCC-------GCACCCTCGATTAGTAGCACCAGCGT------------TCATGGCACCC
AAGGCGGAGAAGAAGCCGGTGGCGA------CGGAGAAGGCCCCGGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCAGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATC
TTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTGGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGAC
CTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CAGCCTAGGCTTCATC-------GGACGAATGGATGGTCGC---------------------------------------
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-----------------------------ATTCTGTATGTAGTTAGCTGCCAGTTTGTGTTCTGAAGATGTTATCTTGTG
AGAATCAGATTGTATCGCCTGTCGGTCTGAAGAAATAGTAATG-------------------------------------
--------------------------------------------------------------------------------
--------------CTCTTTTCAGTGGAACTTTCTGCCTTCGTCTGATTCTTGAGTCC----------------------
TGCAGATACAACCTCTGAAGTTGTAGAGAGATTGCTTTTGTTCTAACTATAATTCTAGTACA------------------
----------------------------AGAACTGTCCATTG--TGTTGCG----AGGCAGCTAGGCTTTGAATCTTTGA
CCAGGAGGCCTTGC--------------------------TGAAAAGGAAGGGATTACTGTCTCCACGATCGACCTGCAT
ATTTTGTGTTCTCTGTTCTACAATGTGACCGAGACGTGAAGGTTGCATATGCACAATGGAGAGGCTGAATAGCACTGATG
AGTAGGCACGTGTAGAAATTCG--GTGTCAAGATGGATGATAAATTTGGTGATGTTTATGCAAATTTGCCGAGCAAGCTC
CCTCTGATGCAAATGGAGTTTTGGTGAGTGCATTTGATGAATCATTCCGGGTCAGGCAAGAATGAACACTGTACATGCTA
TTTCTATCACCTTTTTTTTTGCGGGGTGTTACTCCTATTACTTACCATCATGCAAAAGAGTATCAGTTCAGAGCATGGTG
AAGTAGCAC--AAACGATCAGTTGAAGTAAACAATGCCGTTACTCTTAAACTAATGTTGATCTCTTCCGACTTCCGTGGA
TCCACAAACAAAATGCAGACAGATAAGTGTACCCGAGAGGAAGATCAGAGAACGTACACACTTTCTTTAGAATATAACTC
AGAGCAACTTTAACAAAGGTGCATATATTTGAC-----AAAAAAAGGCGCGTAGAGTAC-CGTTTAGAAGAAATTTGGGA
AAAAATGGTCTCCAACAGATCCTGTAAACATAGAATAAATTTAGAGGATCATGCAAATTTGACATGAACATCCCTCTACT
TTAGGGGAAGTATTACAACCCGTAATATTTTGGCCAACTGAAACTTCAGGCCACC-------------------------
------------------------
>chr6D_748
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----------------------------GCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGCCGTCAA-CCCAAACAT
CAGCCGACGGCTGAAACCGCTCCACGGCATCGATCCGAGGCACCAGCTTCTCCACCAACCACAGCCCGCCTCCTTCCTCC
-TCCAGTTTCCTATATAA--ATCTCGCCGCCCCCTCCCTCCTCCCCACATCGCAGCATCTGCATCCCCCGTCGCCTTCGA
T------CCAAACCCCACCTCCCC-------ACAACCTCGAAT--------CATCAGCAGCAGCCGCTCCCATGGCGCCC
AAGGCGGAGAAGAAGCCGGTGGCTA------CGGAGAAGTCCCCGGCGGGGAAGAAGCCCAAGGCTGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCGGCGACAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTGAAGCAGGTGCACCCGGACATTGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATC
TTCGAGAAGCTTGCCGGCGAGTCCGCCAAGCTGGCCAGATACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGAC
CTCCGTCCGCCTTGTCCTCCCCGGCGAGCTCGCCAAGCATGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CCTCCTAGGCGTCAGTCTCGTTTCTGAACCCGTTGGATTCTGTATGTAGTTAGGTGCAAGATTGTCTTCTGAATTTGTGA
TCTTGTGCTGCTTGTTGGTCTGCAGAAATGTTCATGGGACTACTTAATGATATTCTTGCTGCTTGAAGAAATATTGTGTG
TCACATCAGATTCTTCTTGCTGTTGTGTTTTTTGCTACTCGATTTCATCTGGAAGGTGTTTCTGTACCACTTGATGGAAC
TCTAACATGGCCATGAATTACTTCATTTTGCTTCTCTGTACCTTTCCCTTAGCGAGCAGTCTCTGCAGATATTGCCTCTG
AATTTGCACGGAGCTTGCATTTGTTCACATTTTAATTTTGTACTCGTATTTGTAGTTTGTATTTCTATTAAAAATTCGTT
ATTCTTGTAGTGTTGTCCATGACGTGTTGTGAGGCAACTAGCTTTAAATCAGATTCATATTCTTATTGCTTTTGTGTCTA
TTACTATTCGATTTCATCTGGAAGAGTTCTGTACCACTTGATGGAAATCTAAGAAAGGCCATGAAATGCTTCGTTTTTCT
TCACTGTACTTTTTCCTTAGCAAACAGTCTCTGCAGATACTGCCTCTGAAGTTGCATGGAGATTGCTTTTATTCTCATTT
TAATTCTGTTAATAGTTCGTTATTCTTGTAGTACTCTGTTCTCCATGTGTTTTCTGTTCCACCAAGTTCACCTCCTCCTA
GGCTTCAGACGCGTTTTTGAATCCGTTGGATTCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTGATC-----
---------TTGTGCTGCTTGTGGGTCTGAAGAAATGTTCATGGGACTGCTTAATGAATATTCTTGCCGCTTGAAGAAAT
ATTGCGTGTCACATCGGAATCTTCTTGCTGTTGTGTTTTTTGCTACTTGATTTCATCTGGAAGGTGTTTCTGTACCACTT
GATGGAACTCCAGTAGAATTTCATCAGA--------------AACAGTCT-------C----------------------
TGCAGATACAACCTCTGAAGTTGCACAAAGCTTGCCTTTGTTCTCATTTTAATTCTGTACTAGTATTTGTAGTTTGTATT
TCTG----------------------GTAGTACTGTCCATGTCATGTTGTG----AGGCAGCTAGCTTTGAATCAGACGA
ACATACAGA-----------------------------------------------------------------------
--TTTGTGTTCTCTGTTCCACAATGTGATGGAGGCGTGATCGTTCCATATGCACAATGGAGAGGCTGAATAGCA------
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>chr6A_748
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----------------------------GCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGCCGTCCACCCCAAACAT
CAGCCGACGGCTGAAACCGCTCCACGGCATCGATCCGAGGCACCAGCCTCTCCACCAACCACAGCCCGCCTCCTTCCTCC
ATCCAGTTTCCTACATAA--ATCTCGCCGCTCCCTCCGT-------------------------------TCACCGTCGA
T------CCAAACT-CATCTCCCC-------ACACCCTCGAAT--------CATCAGCCTCA---GCTCCCATGGCGCCC
AAGGCGGAGAAGAAGCCGGTGGCGGAGAAGGCCGAGAAGACCACGACGGCGAAGAAGACCAAGGCCGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTCAAACAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAGCGACATC
TTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACGTCAAGGGAGATCCAGAC
CTCCGTCCGCCTCGTCCTCCCTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CCTCCTAGGCTTCATCCTCGTTTCTCAATCCGTTGGAC------------------------------------------
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-------------------------------TCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTAATC-----
---------TTGTGCTGCTTGTGGGTCTGAAGAAATATTCATAGGACTGGTTAATGAATATTTTTGCCGCTTGAAGAAAT
ATTGTGTGTCACATCAGATTCTTCTTGCTGT-GTGTGTTTTACTACTCGGTTTCATCTGGAAGGGGTTCATGGGATGGCC
ATGAAATACTTCATTTTTCTTCTTTGTACCTTTCCCTTAGCGAACAGTCT-------C----------------------
TGCCGATGCTGCCTCTGAAGTTGCATGGAGCTTGCCTTTGTTCTCCTTTTAATT-TGTACTTGTATTTGTAGTTTGTATT
TCTGT----------TGATTCTTGTAGTGCTGTTCGTG-TTG--TGTTGTG----AGGCCACTAGCTTTGAATCAGATGA
ACATGCCGAT----------------------------------------------------------------------
-TTTTGTGTTCTCTGTTCCACAATGTGATGGAGGTGTGACAGTTCTATATGCACAAAGGAGACTCTGAATAGCA------
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>chr6D_999
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---------------------------------------------------------------------CCATGGCGCCC
AAGGCAGAGAAGAAGC-GGTGGCGA------CCGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCCGCC
GGCGTCCAAGGAGGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTACAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATC
TTCGAGAAGCTCGTCGGCGAGTCCGCCAAGCTCGCGCGCTACAACAAGAAGCCCACCATCACCTCTAGGGAGATTCAAAC
CTCTGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCAAGGCTGTCACCAAGTTCACCT
CGTCCTAGGCTTCATCCTTGTATGGACGAATCGATGGTGGC---------------------------------------
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-----------------------------ATTCTGTATGTAGTTAGCTGCCAGTTTGTGTTATGAAGATGTTATCTTGTG
AGAATCAGATTGTATCGCTTGCCGGTCTGAAGAAATAGTAATG-------------------------------------
--------------------------------------------------------------------------------
--------------TTCTTTTCAGTGTAACTTTCCGCCTTTGTCTGATTCTTGTGCTGACTACTATGGTTTGCAATTCCT
TGCAGATACAATCTCTGAAGTTGTAGAGAGATTGCTTTTG-----CTCTAATTC-TGTACTAGTATTTGTACTTTTCTTT
TCTGTCATTAATCCATGATTCATGTAGTACTACTGTCCATCG--TGTTGTG----AGGCAGCTAGGCTTTGAATCTTTGA
CTAGGAGGTGCCATTTTGCTGAAAAGGAATGGACTCCTGTT---------------------TCCACGATTGACCTGCAG
ATTTTGTGTTCTCTGTTCCACAATGTGATGCAGACA-GACGGTTGCATACGCACAATGGAGAGGCTGAA--GCAATGATG
CGTAGGCACGTGTTGAAAGAATTTGTGTCAAGATGGATGATAAA-TTGGTGGTGTTTCTGCAAATTTGCTGAGCAAGCTC
CGTCTGTCTGCC--------------------------------------------------------------------
-----------------------------------------------TCATGC-AAAGAGTATTAGTTCAGAGCATGGTG
AAGTAGCAGTAAAACGATCAGTTGAAGTAAACAATGCCGTTACTCTTAAACTGATGTTGATCTCTTCT-------GTGGA
TCCACAAACCAAATGCTGATAGACAATTGTACCTGACACGAAGATCAGAGAACGTACACACTTGTTTTAGAATATAACTC
AGAGCAACTTCAACAAAGGTGCATAGATTTGACC---AAACAAAAGGTGCATAGAGTAC-CCTTTAGAAGAAGT------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS--------------------S--------------S-S---S----------S--------
-S--------S---------------------------------------------------------------------
S-------------------------------------------------------------------------------
------------------------------------------------S------------------SS-----------
---------------------------------------------------S--------------------------S-
-----S---S-------------SSSSSSSS-------------------------------------------------
-----------------------S-----------------S--S--------------------S--------------
------------------------------S---------S---------------------------------------
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------------------------------------------S---------------------------------S---
-------S------------------------------------------------------------------------
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-----------------S--------------------------------------------------------------
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--------------------------------------S------------SSSS-------------------------
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------------------------------------------------------------------------------S-
---------S-----------S--------------S------S------------------------------------
-S-----------S------------------S------------S-----------S---------------S------
----------------------------------------------------------------------------S---
-----------S--SSSSSSSSS---------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------S---------SSS---------------S------S-------------------S
------------S-------S-S--------S-------S---------S---S--------------SS--------S-
SS---------------S---------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_224
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--------------------------------------------CCTCTTGGCAAGGGAATCGT----------------
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>reverse_2612
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---------------------------------------------------TTCCAGGCAGCTAGGCTTTG---------
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