>input_sequence_81208
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--------ATGGCGCCCAAGGCCGCAGAGAAGAAGCCGGT------GGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGCG
GAGAAGAAGGTGC------------CGGCGTCCAAGGAGGGCGGAGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCGCGGTACAACAAGAAG
CCCACCATCACGTCGAGGGAGATCCAGACCTCCGTTCGCCTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCTGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAG-------------------------------------------
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>chr6B_1_TraesCS6B01G055300
GCGGATGCAGATGAGGACACCCATCTGCGATGTTCCGGTGTGGTAGAAAACGGCGAAACGACCTGCCGCAGGCAGTCATC
GCGCACTTTATGACCGCCAATGGTAAGCCGACGAGCCGTTGGGCCAACGTCGAGCCGGGGCGACGACGGGGCGTGTCTTT
GCAGGCGAACCGTCGACGGGACAAATCCGAGCAGCTAGAGTCAATGCCTGCATGCGGCGCGGAGGCGTT-GCCTGGGTTG
TGTAGTTCGATACCCGACCAATCCATGG-AAGGCGCATGCGCCGTCGGCCGGATGCACCAAATCCTCCTATCACAGGTCT
ACTAGTTGGCCGTCGGCGCCGG-TGCGAGAGAAGCACAAATCCGGTTGTTGTGCTTTTGGACGGCCGGGTTGGACAGAGA
GGCGGCAGGGGAAAATGGGCGGCGGCAATGACGGCGGAGGGGAAGGAAAAGAAAAAGGTGTATCTGTGTCCCTGACGGGA
GGGCCAGGGAAGAACAAGGGCTCGCGTCCCGTTCGTTCGTGCGTGTCCCTTTCCACACAAACACAGTTTAAATTTGAATA
AAAATAATTTGAAAGTGGACAAAAAAAGATGTTTGTCCATTTGCACCCGCACGTTGAG-----------AACAGTTTTAT
GTCCGTTTACCATGTTGGAGTTGGCCTAAGCCTACACCTACGATGTGTGCTGGTATATGCATG-------TCGTTCACCA
TCCGCCGGCCAGAGTCATGTACCGCCCCGCCCGTGCACGTTTCGGCCAGGTCACCGATCCGCGCCAAAGCGCATCCGGGC
CGTCTAACCCATACAT--CGACTGACGGCTGAAACCGCTCCAC-GGCATCGATCCGAGGCAGCAGCGTCTCCACCAACCA
CAGCCCGCCTCCTCCCTCCTTCCACTTTCC-TATATAAATCTCGCCGCCCCCTCCCTTCTCCCCACATCACAGCATCTGC
AGCCCCCCTCG-------CCTCCGAT-------------CCACACCCGACCTCCCCACACCCTCGAATCATCATC---AG
CAGCACCCATGGCGCCCAAGGCCGCAGAGAAGAAGCCGGT------GGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGCG
GAGAAGAAGGTGC------------CGGCGTCCAAGGAGGGCGGAGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCGCGGTACAACAAGAAG
CCCACCATCACGTCGAGGGAGATCCAGACCTCCGTTCGCCTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCTGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCCTCTTCC--------------GATGGCAGCGTTTTGTGTGT
AGTTAGCAGTGCGATGGTACAATCTCTGTAGGAATTGTGCTGCTTGTTGGTCTGAAGAAATAGTAATGTCGCCGTCTGAA
TTATTGCTCAA-CGTGTGCTTGTATTATTCAGTTTCGGTTGGAAGGTTCTTCTGTACGCCTTGCTACTTCTCTTTTTTGT
GCAGTTTGAATCTGGTACTGTAGTTCGGAAGTCTGCAGGTACAACCTCTCATTTTCATTAACCTCTTTGTAGTTTGGATT
ACTGTAGTTAATTCGTGATTTTGCAATTGCTTAGATGTTGTCAGGT------------CCCCATACTGAAATTTTCAATC
TCTACGGTTGTTGCCATTCGAGTAAAACTGAAATTGGTTAACTTTGTTAATTTCTCACGGGTTATTCCTTTTTTCTCAGT
GGACTTGTAATCCACCAAGAACAGCTTATGTGCTCACAAAATCGCAACATGTCAGACTCAGGGCAGCTTCTTGGGGTAAA
TTAGATGCGTTTTGCTAAAAAGAAGAAGAGATAAGCTAGAAGCATTGCGCCCATGGATTTTAGAGGCAGGGAACATGCCA
GATGCAACCAACATTTTATTAGGATGTCAACAAAAAAGTTTGTTAATTGTTGCTATTAAGACACCGGAGTTTTTTTTTTC
TCTATGTACTACACTAGGTAATTATGTGAACGCACCAAGTTCTTGTAATGATTCAATTCTGTATGTTTATGTACCTTTGT
ATGGATATACTACATTCTAACTTGAGTGCATTGGCAAGAGCCATTCACTGTCTATGAGATATGCGCCACTGCACATTCTC
CATCTTTGGGTATGGGAGCAGTTCATGTTTGTGTTTTGATGATGTTACTATATTTTAAGAGTTGTGCTGTGCGAGTATGA
AGAAATACTATTGTTACTGCCTAAATTAATTTCAAGGTTTGTAGTTTGATACCAGGCTCTTTGTGCAGAAATCTTTACTG
TTGGTAATTTGAATTTCTGTAGTT
>chr6D_156
ACCGACCCGCCCGAGAGCGTTTCCGCCACGTCACCGATCCGCGCCAAAGCGCATCCGGTCCGCCCATCCCAACACAGCGA
CGAACGGCTGAGACTACCCAAAAGGCATCGATCCGCGGCATCCGCACCTCCACCAATCACAGCCCACCTTCTTT------
GCAGGTGAACCATCGACGGGACAGATCCGAGCGGCTAGAGTCAATACCTGCATGCGGCGCGGAGGCGTTTGCCTGGGTTG
TGTGGTTCAATACCCGACCAATCCATGGCAAGGCGCAGGCGCCGGCGGCCGGATGCGCCAGATCCTCCCATCACAGATCT
ACTAGTTGGCCGTCGGACGCCGATGCGAGAGAAGCACAAATCCGGTTGTTGTGCTTTTGGGCGGCCGGGTTGGACAGAGA
GGCGGCCGGGGAAAATGGGCAGTGGCAATGACGGGGGAGGGAGGGGAAGAGAAAAAGGGACGTCTGTGTCCCCGACGGGC
GGGCCAGGGGAGGATAAGGGCACGCGTCCTGCCCGTTCGCGCGTGTCCCTTTCCACGCAAACACGGTTCAAATTTGAATA
AAAATAATTTGAAAGTGGACAAAAAAGGATGTTTGTCCATTTGCTCCCGCACATCGACCATAGTTTTACAACAGTTTAAT
GTCCATT------------------------------CTACGATGTGTGCTGGTATATGCATGGCCACGATCGTTCACCA
TCCGCCGGCCAGAGTCATGTACCTCCCATGCCGTGCACGTTTCGGCCAGGTCACCGATCCGCGCCAAAGCGCATCCGGGC
CGTCCACCTCAAACAT--CAGCCGACGGCTGAAACCGCTCCAC-GGCATCGATCCAAGGCACCAGCCTCCCCACCAACCA
CAGCCCGCCTC---------------------------------------------------------------------
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>chr6D_720
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--------------------ACCGACCTGCCAGTGAACGTTTCCGCCACGTCACCGATCCGCGTCAAAGCGCATCCGGTC
CGTCCATC-CATACACAGCGACGAACGGCTGAAACTAACCCAAAGGCATCGATCCGCGCCATCCGCATCTCCACCAATCA
CAGCCCACCTTCCTCCTCCGTCCTCCTCTA-CATAACAATCCCGCCGCCCCATCCG-CCTCTCCACATCGCAGCATCCGC
AGTCCCCCCAG-------CCCACACCTTCCAACCAAGCACCAAGCTCCACCGCCGTCGA---------------------
-AGCACCCATGGCACCCAAGGC---GGAGAAGAAGCCGGCGC---CGGAGAAGACCCCGGCGGGGAAGAAGCCCGCGGCG
GAGAAGAGGCCCGCGGCCGGGAAGACGGCGTCCAAGGAGGGCGGGGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTGGCCCGCTACAACAAGAAG
CCCACCATCACGTCGAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCTTCTTAGGCTTCATCCTTGTATCATGAGTTGATGGCGGTGTTCTGTGTGT
AGTTAGCAGTGCGATGTTACAATCTCTGTAAGAATTGTGCTGCTTGTGGGTCTGAAGAATTAGTCAGGTTGCTGTCTGAA
TTATTGCTCAATCGTGTGCTTGTTTTATTCAGTTTCGGTTGGAAGGTTCTTCTATGCGTCTTGCTAGCTCTCGTTTTTGT
GCAGTCTGAATCTGGTTCTGTAGTTCGTAAGTCTGCAGGTACAACCTCTCATTTTCATTAACCTCTCTGTAGTT--GATT
ACTGCAGTTAATTCGTGATTTTGCAGCCGCTTAGGTGTTGTCAGGTTTATCATTTAGGCGCCGTACTGAAATTTTTATCC
TCTGA--TTGTTGCCATTCGAGCAAAACTGAAGTTGGTCGACGTTGTTAATTTCT-------------------------
-GACTTGTCATCCATCAAGAACATGTCTGAAAATTTGGAATCAGATGCTTTCTGCAA----------TTTTTCCGAGAAA
TTAGAGGCTTCCTGCGAAA---AAGAAGAGATAAGCTAGAAGCATTGCGCCCATGTTTTATAGAGGCAAGGGACATGCCA
AATGCAACCAACACTTTGTGATGGCACAC---AAAAAGTTTGTTAATTGTTACTGTTGAGACACCTGAGTTTTTTCTCTA
TGTTTATACTACACTAGGTAATT---------------------------------------------------------
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>chr6D_729
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-----------------------------CCCGTGCACGTTTCAGCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGC
CGTCAACC-CAAACAT--CAGCCGACGGCTGAAACCGCTCCAC-GGCATCGATCCGAGGCACCAGCTTCTCCACCAACCA
CAGCCCGCCTCCTTCCTCCT-CCAGTTTCC-TATATAAATCTCGCCGCCCCCTCCCTCCTCCCCACATCGCAGCATCTGC
ATCCCCCGTCG-------CCTTCGAT-------------CCAAACCCCACCTCCCCACAACCTCGAATCATCAGCAGCAG
CCGCTCCCATGGCGCCCAAGGC---GGAGAAGAAGCCGGTGGCTACGGAGAAGTCCCCGGCGGGGAAGAAGCCCAAGGCT
GAGAAGCGGCCGC------------CGGCGTCCAAGGAGGGCGG---CGACAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATTGGCATCTCCTCCAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTTGCCGGCGAGTCCGCCAAGCTGGCCAGATACAACAAGAAG
CCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTTGTCCTCCCCGGCGAGCTCGCCAAGCATGCCGTCTCTGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGC-----------------------------------------
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>chr6B_737
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-------------------------------------CGTTTCCGCCACGTCACCGATCCGCGTCAAGGCGCATCCGGTC
CGTCCATC-CA-ACACAGCGACGAACGGCTGAGACTACCCCAAAGGCATCGATCCGCGGCAGCCGCACCTCCACCAATCA
CAGCCCACCTTCTTCCTCCTTCCTCCTTCTATATAACAATCTCGCCGCCCCATCCG-CCTCCCCACATCGCAGCACCTCC
AGCCCCCCTCAGCCCACACCTTCCAA-------------CCAAGCTCCACCGCCGTCGA---------------------
-AGCACCCATGGCGCCCAAGGCCGCAGAGAAGAAGCCGGT------GGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGCG
GAGAAGAAGGTGC------------CGGCGTCCAAGGAGGGCGGAGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCGCGGTACAACAAGAAG
CCCACCATCACGTCGAGGGAGATCCAGACCTCCGTTCGCCTCGTCCTCCCCGGCGAGCTTGCCAAGCACGCCGTCTCTGA
GGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCCTCTTCC--------------GATGGCAGCGTTTTGTGTGT
AGTTAGCAGTGCGATGGTACAATCTCTGTAGGAATTGTGCTGCTTGTTGGTCTGAAGAAATAGTAATGTCGCCGTCTGAA
TTATTGCTCAA-CGTGTGCTTGTATTATTCAGTTTCGGTTGGAAGGTTCTTCTGTACGCCTTGCTACTTCTCTTTTTTGT
GCAGTTTGAATCTGGTACTGTAGTTCGGAAGTCTGCAGGTACAACCTCTCATTTTCATTAACCTCTTTGTAGTTTGGATT
ACTGTAGTTAATTCGTGATCATG---TTGTTTAGATGTTGTCAGGTTTATCATTTAGGCAGCATACTGAAATTTTCAACC
TCTACGGTTGTTGCCATTCCAGTAAAACTGAAGTTGGTCAGCTTTGTTAATTTCT-------------------------
-GATGGGTCGTTCCTTTTTT------------------------------------------------------------
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>chr6D_894
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--------------------------------------ATCTCGCCGCCCCCTCCA-TCTCCCCACACCGCAGCATCTGC
AGCCCCACAT------CACCTCCGAT-------------CCAAACCCCACCTCCCCGCACCCGCGAATCATAATCAGTAG
CAGCCCCCATGGCGCCCAAGGC---AGAGAAGAAGC-GGTGGCGACCGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCC
GAGAAGCGGCCGC------------CGGCGTCCAAGGAGGGCGG---CGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAG
CGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTACAAGGCCATGT
CCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGTCGGCGAGTCCGCCAAGCTCGCGCGCTACAACAAGAAG
CCCACCATCACCTCTAGGGAGATTCAAACCTCTGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCTGA
GGGCACCAAGGCTGTCACCAAGTTCACCTCGTCCTAGGCTTCATCC----------------------------------
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>SNPs
S-S--SS-SSSS---SS-SSSSSSSSSSSS-SSS-SSSSSSS-SSS--SSSSSSSSSSSSSS-SSSSS-SSS--SSSSSS
SSSSSSSS-SS---SS--S-SSSSSSSS---SSS--S-SSSSSS--S-SS-SSSSSSSSSS-S-S--SSSSSS-SSSSSS
-----S-----S-----------S--------S------------S----------------------------------
---S----S----------------------------S------S-----------S---S-------S-------S---
----------------SSS-S---------------------------------------S-------------------
------S-------------S-S-----------S------SSS----S---------SSSS----------S------S
---------S--S-S------S-------S-SS------S----------------S-------S---S-----------
--------------------------S-----------------S-------S-S--S-------------------S--
----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
---------------------------S----------------------------------------------------
----S-S-S-------------S-------------------------------------------S-------------
-------------S-------------------------------------------------------S----------
------------------------------------------S----S--------------------------------
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-------------------------S---------------------------------S------------------S-
--------------------------------S-----S----------------SSSSSSSSSSSSSSSSSSSSSSSSS
S-------S-----S--------SS-SSSSSSS-SSSS--SSS-SSS-S-SSSSS-SSSSSSSSSSS--S--SS-SS---
-----S--S-SS---S---SSS---------------------------------SS--S--------S--S--------
S------------S---S-S-S-SSSSSSSSS-------------------S--S--S-------S---------S-S-S
-S-S-S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------TCCGGTGTGGTAGAAAACGG---------------------------
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>reverse_1981
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------------------------------------------------------------GGGCAGCTTCTTGGGGTAAA
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