CLUSTAL X (1.81) multiple sequence alignment input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AAGGTTTCGTTGGGGGAAGTGCGCGTGTTGCATGTTCCTACTTCCTCCCA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GTATGCAGACATCTTCACCAAAGGACTGCCTACTGCCACTTTCACACAAT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TCAGGTCCAGTCTCAACGTTCGGTCCTCCCACGATGAGACTGCGGGGGGC chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 ----GTCCAGTCTCAACGTTCGGT-------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TGTTAGACTACTTGTATTGGTCTCCTACGCTATCGGCTTGAGCTGGTCAA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GTGTGCCTTATCCCGCCGACGTTGCATGGCGCATGCAGCGCAACTACCCA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TCGATCTAGGATCGATTGTTGTATTCAGTTAGAGAGTGCATGTGTATCTT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 CTTCTCCTCTCTCACTGATGTAATCTATATATCATTACCCCTTGTGGATG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AATACAAGCGTGATGCATCCCAAACTCATCTCAATTCTTAACAGCCGAAA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GTGGAGAACATCATCAACACTGGTCCTGAATGGATAATTCACCTGCTTGA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GGGATGCACTCATGAAGAGCGTCTTCCAGTGCTAATGACGCTATGGAGGA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ATTGGTACGTCCGAAATGAAATACACCACGAGAAGCCGGCACCTCCGATT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GAAGCATCCAGAAGGTTCCTTTGCGGTTATATTGATAGTCTGCTCACTAT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TCAGCAATACCCCACTTCCGATATAGCTAAAGGGAAGATGGTTATCTCCT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ATGGTGATCAAAGTTTTAAATAGCGCGCTAAGCATCTTAGCGCCGGACTT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 ---------------------------CTAAGCATCTTAGCGCCGGA--- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 CTTTCAAATGCTATAGCGTGCTATAGCGGAGCTATAGCGCGCTATTTAAA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ATGTTTGTTCATTCGTTTGGACCAATGTCTCTTAGCGCAAGACCTTTTGT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AAACGTTGTAGCGTGCTATAGCGGAGCTATAGCGGGCTATTTGAAACAGT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GATGGTGATCTAAAGAACAGGAAGAAGTCTGATGCAACAGCGGCAAACTG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 CAGTCGAACTCCAGAGCGCTGGAGCAAGCCGCCGATGGGGTGGGCGAAAC chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TCAATGTAGACGGAGCTTGGCGAGAAGAAGACGGCACGGGAGGAGCCGGA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 ATGATACTGCGAGACCATGAAGGGGCGGTCATTTTTGCCTCCTGCCGGTT chr6B_1_TraesCS6B01G002400 ATGATACTGCGAGACCATGAAGGGGCGGTCATTTTTGCCTCCTGCCGGTT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 CATCCAACGCTGCACCAGTGCACTCGAGGCGGAGGTCGCAGCGTGCATGG chr6B_1_TraesCS6B01G002400 CATCCAACGCTGCACCAGTGCACTCGAGGCGGAGGTCGCAGCGTGCATGG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 AGGGCTTGACCCTTGCCCTCGAATGGAGCAGAGCCCCTCTCATTATTGAG chr6B_1_TraesCS6B01G002400 AGGGCTTGACCCTTGCCCTCGAATGGAGCAGAGCCCCTCTCATTATTGAG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 ACAGACTGCACGTTTGCGGCAAGCATGTTGTATGATCCTGAGCTCAATAG chr6B_1_TraesCS6B01G002400 ACAGACTGCACGTTTGCGGCAAGCATGTTGTATGATCCTGAGCTCAATAG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 ATCACCGGTTGCATCTCTGATAGAAGCAACGAAGCGGCACCTTGCGGCTG chr6B_1_TraesCS6B01G002400 ATCACCGGTTGCATCTCTGATAGAAGCAACGAAGCGGCACCTTGCGGCTG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 GGTGTCAACATGTAATTAAGGTGATCAAGAGAGAACAAAATAGTGTTAGC chr6B_1_TraesCS6B01G002400 GGTGTCAACATGTAATTAAGGTGATCAAGAGAGAACAAAATAGTGTTAGC chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 CATGCTTTGGCCCAGATGGGGCGATCTGTACCCAGAACAGCCGTTTGGCT chr6B_1_TraesCS6B01G002400 CATGCTTTGGCCCAGATGGGGCGATCTGTACCCAGAACAGCCGTTTGGCT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------CTGTACCCAGAACAGCCGTT----- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 GCGTTCGGTCCCTGAAGAGGTTGACTTGCTATGTCAACAGGATTGTAATG chr6B_1_TraesCS6B01G002400 GCGTTCGGTCCCTGAAGAGGTTGACTTGCTATGTCAACAGGATTGTAATG chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 ACAACGTTTGA--------------------------------------- chr6B_1_TraesCS6B01G002400 ACAACGTTTGAGTAATGAATTTTTTCCATTCGCAAAAAAAAAGTATATAT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ACATCAGATTCAAGATGTTTGGATTTATGATTGGAGAAGCGTCCGGTGTA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TTTTCGTCTGCAATTAGTTGGACACAACAATGGAAAGAACTTGATTTTCT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TCTTCCAACCAACTATAAGCTGTCGGGTGCCTGAGCAAGTCATCTCGCTC chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------GGTGCCTGAGCAAGTCATCT----- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ATCTTGATCTACCAGCTCCTTTTTCTTAGTCAGGTATGAATGTATGATGT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AAATTCTTTTTTTTTTGAAATGAAAAGGTAGATGAGGTTCTACCTTATAT chr3D_1657 ------TTTTTTTTTT-GAAATGAAAGGTAGATGAGGTTCTACCTTATAT chr2B_1658 -------TTTTTTTTTGAAATGAAAAGGTAGATGAGATTCTACCTTATAT chr5B_1658 -------TTTTTTTTT-GAAATGAAAGGTAGATGAGATTCTACCTTATAT chr1D_1658 -------TTTTTTTTT-GAAATGAAAGGTAGATGAGGTTCTACCTTATGT chr7B_1658 -------TTTATTTTT-GAAATGAAAGGTAGATGAGATTCTACCTTATAT chr4A_1658 -------TTTTTTTTT-GAAATGAAAGGTAGATGAGATTCTACCTTATAT chr2A_1659 --------TTTTTTTT-GAAATGAAAGGTAGATGAGATTCTACCTTATAT chr3B_1659 --------TTTTTTTT-GAAACGAAAGGTAGATGAGATTCTACCTTATGT chr3B_1659 --------TTTTTTTT-AAATGAAAAGGTAGATGAGATTCTACCTTATAT chr5B_1659 --------TTTTTTTTGAAATGAAAAGGTAGATGAGATTCTATCTTATAT SNPs SSSSSS-------------------------------------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ATTTCAAAACAGGCCATGGCCTGG-----GACCAAAAGG-TCGATTACAT chr3D_1657 ATTTCAAAACAGGCCTAGGCCTGG-----GACCAGGTGG-TCGATTACAT chr2B_1658 ATTTCAAAACAGGCCAGGGCCTGG-----GACCAAA-GG-TCGATTACAT chr5B_1658 ATTTCAAAACAGGCCAAGGCCTGG-----GACCAAAGGG-TCAATTACAT chr1D_1658 ATTTCAAAACAGGCCTAGGCCTGG-----GACCAAATGG-TCGATTACAT chr7B_1658 ATTTCAAAACAGGCCAAGGCCTGGCCTGGGACCAAAGGG-TCGATTACAT chr4A_1658 ATTTCAAA-CAGGCCAAGGCT-----TGGGACCAAAGGG-TCAAATACAT chr2A_1659 ATTTCAAAACAGGCCAAGGCCTGG-----GACCAAA-GGATCGATTACAT chr3B_1659 ATTCCAAAACAGGCCAGGGCCTGG-----GACCAAA-GG-TCGATTACAT chr3B_1659 ATTTCAAAACAGGCCAGGGCCTGG-----GACCAAA-GG-TCAATTACAT chr5B_1659 ATTTCAAAACAGGCCGTGGCCTAG-----GACCAAT-GG-TCGATTACAT SNPs ------------------------------------S------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GAAGCTTACAAGAGGCACCGTAGTGCCATGGCTGTAAGCAGCCAAATACA chr3D_1657 GAAGCTTACATTGAGCACCGTGGTGCCATGGCTATAAGCAGCCATTTGAA chr2B_1658 GAAGCTTACATTGAGCACCGTAGTGCCATGGCTTTAAACAGCCATTTGAA chr5B_1658 GAAGCTTATATTGAGCACCGTAGTGCCATGGCTATAAGCAGCCATTGGAA chr1D_1658 GAAGCTTACATTGAGCACCGTGGTGCCATGGCTATAAGCAGCCATTTGAA chr7B_1658 GAAGCTTACATTGAGCACCGTAGTGCCATGGCTATAAGCAGCCATTGGGA chr4A_1658 GAAGCTTATATTGAGCACCGTAGTGCCATGGCTATAAGCAGCCATTGGAA chr2A_1659 GAAGCTTACATTGAGCACCGTAGTGCCATGGCTATAAGGAGCCATTGGAA chr3B_1659 GAAGCTTACATTGAGCACCGTACTGCCATGGCTGTAAGCAGCCATTGGAA chr3B_1659 GAAGCTTACATTAAGCACCGTAGTGCCATGGCTGTAAGCAGCCATTTGAA chr5B_1659 GAAGCTTACATTGAGCACCGTAGTGCCATGGCTGTAAGCAGCCATTTGAA SNPs ----------SS-S------------------------------SS-SS- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GAGGCGGAGAGA------------AAGAAGAA-AAGAAGATTGCTACAAA chr3D_1657 AGAGAGAAAAGTAGGGGTAAGGGGAGGGGGAA-TTCAAGAACACTACAAA chr2B_1658 GGAGTGAAGAATGGGGCAAAC---GAGGAGAA-AAGAAGATTACTACAAA chr5B_1658 AGAGAGAAGAACGGGGTAAGC---GAGGAGAA-AAGAAGGGTACTAG--- chr1D_1658 AGAGAGAAAAGTAGGGCAAGG---GAGGGGAAGTTGAAGAACCCTACAAA chr7B_1658 AGAGAGAAGAACAGGGTAAGC---GAGGAGGA-AAGAAGAGTACTAGAAA chr4A_1658 AGAGAGAAGAACAGGGCAAGC---GAGGAGAG-AAGAAGAGTACTACTAC chr2A_1659 AGAGAGAAGAACAGGGCAAGC---TAGGAGAGAAAAAAGAGTGCTAC--- chr3B_1659 GAAGCGGAGAAA------------GAGGAGAA-AGGAAGATTACTACAAA chr3B_1659 GGAGCGAAGAACGAGGCAAAC---AAGGAGAA-AAGAGGATTACTACAAG chr5B_1659 GTAGCAAAGAACGAGGCAAAC---GAGGCGAA-AAGAAGATTACTACAAA SNPs --S------------------------S---------------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GC-TAGAGCT----AA--------------CGCTAATCTAGCCCAGCAGG chr3D_1657 AGCTACAAAAGCTAAA--------------AT------TGGCTCAGGAGA chr2B_1658 GC-TAGAACT----AA--------------CT------TAGTTCAGGAGG chr5B_1658 ----AAAGCT----AA--------------AT------TAGTTTAGGAGG chr1D_1658 AGCT---------AAA--------------AT------TAGCTCAGGAGA chr7B_1658 GC-TAAATTAG-------------------------------TCAGGAGG chr4A_1658 AATTAAAGCT----AA--------------AT------TAGCCCAGGAGA chr2A_1659 ----AAAGCT----AA--------------AT------TAGTTTAGGAGG chr3B_1659 GC-AAGAACT----AA--------------CT------TAGTTCAGGAGG chr3B_1659 GC-TAGAACT----AACTTAGTTCTTAGTTCT------TAGTTCAGGAGG chr5B_1659 GC-TAGAACT----AA--------------CT------TAGTTCAGGAGG SNPs -------------------------------SSSSSSS--------S--- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AACATCCAGCTTGTAATAGCATCTTTGTCCTCCTGTTTTTGAGCCCGGTG chr3D_1657 TACATCCAGCTCGTAATAGCATCCTTGTCAGTCTGCCTTTCGGCCCGGTG chr2B_1658 TACATCCAGCTCGTAATAGCATCCTTGTCGTCCTGCTTGTTAGCCCGGTG chr5B_1658 TACATCCAGCTCGTAATAGCATCCTTGTCAGCCTGCCTTTTAGCCCGGTG chr1D_1658 TACATCCAGCTCGTAATAGCATCCTTGTCAGCCTGCCTTTTGGCCCGGTG chr7B_1658 TACATACAGCTCGTAATAGCATCCT-GTCAACCTGCCTTTTAGCCCGGTG chr4A_1658 TACATCCATCTCGTAATAGCATCCTTGTCAGCCTGCTTATTTGCCCGGTG chr2A_1659 TACATCCAGCTCGTGATAGCAACTTTGTCAGCCTGCCATTTAGCCCTGTG chr3B_1659 TACATCCAGCTTGTAATAGCATCCTTGTCATCCTGTTTTTTAGCCCGGTG chr3B_1659 TACATCCAGCTTGTAATAGCATCATTGTCGTCCTGCTTGTTAGCCCGGTG chr5B_1659 TACATCCAGCTCGTAATAGCATCCTTGTCGTCCTGCTTGTTAGCCCAGTG SNPs S----------------------------S----------S--------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TTGCCAAGTTTGTAGGAGTTTTGACATGTAAGTTTTGAGATATAGTGGTG chr3D_1657 CTGCCATGCCTCAAGGAGTTGTGACATATATCGTCTGAGATAGAACGGAG chr2B_1658 CTGCCATGCCTGAAGGAGTTGTGACATATATCTTTTGAGATAGAACGGGG chr5B_1658 CTGCCAAACCTGAAGGAGTTGTGACATATATCTTCTGAGATAGAACGGAG chr1D_1658 CTGCCAAGCCTCAAGGAGTTGTGACATATATCGTCTGAGATAGAACGGAG chr7B_1658 CTGCCAAGCCTGAAGGAGTTGTGACATATATCCTGTAAGATAGAACGGAG chr4A_1658 TTGCCAAGCCTGAAGGAGTTGTGACATATATCTTCTGAGATAGGACGGAG chr2A_1659 CTGCCAATCCTGAAGGAGTTGTGACATATATCTTTTGAGATAGGACGGAG chr3B_1659 CTGCCAAGCCTGAAGGTGTTGTGACATATATCCTCTGAGATAGAACAGAG chr3B_1659 CTGCGATGCCTGAAGGAGCTGTGACATATATCTTCTGAGGTAGAACGGGG chr5B_1659 CTGTCATGCCTGAAGGAGTTGTGACATATATCTTCTGAGATAGAACGGAG SNPs --------SS--S-------S------S--SS----------S-SS--S- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ACCATCTGTTGTTGTTGAAGACCCTATCATTCCTCGCGTGCCAGAGAGTA chr3D_1657 GCCATCTCTTATCGTTGAAGAATCGATCATGTCTAGTGTGCCAAAGAGTA chr2B_1658 GCCATCTGTTGTTGTTGAAGATCCTATCATTCCTCGCGTGCCAGAGAGTA chr5B_1658 GCCATCTGTTGTTGTTGAAGACTCTGTCGTTTCTCGCGTGCCAGAGAGTA chr1D_1658 GCCATCTCTTATCGTTGAAGACTCGATCATTTCTAGCGTGCCAGAGAGTA chr7B_1658 GCCATCGGTTGTTGTTGAAGACTCTGTCGTTTCTTGCGTGCTAGAGAGTA chr4A_1658 GCCATCTTTTGTTGTTGAAGATTCTGTCGTTTCTCGCGTGCCAGAGAGTA chr2A_1659 GCCATCTGTTGTTGTTGAGAACTCTGTCGTTTCTCGCGTGCCAGAGAGTG chr3B_1659 GCCATCTGTTGTTGTTGAAGACCCTATCGTTTCTCGCGTGCCAGAGAGTA chr3B_1659 GCCATCTGTTGTTGTTGAAGACCCTATCATTCCTCGCGTGCCAGAGAGTA chr5B_1659 GCCATCTGTTGTTGTTGAAGACCCTATCATTCCTCGCGTGCCAGAGAGTA SNPs S------------------------------------------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 ACCGCAGCCGCAGCGAAAAGAATGTGCACCCCTCTGGAGTTAAACCAAGC chr3D_1657 ACTGCAGCCACAGCGAAAAGAATGTGTACTCCGCTCGAGTTGATCCAAGC chr2B_1658 ATCGCAGCCGCAGCGAAAAGAATGTGCACACCTCTAGAGTTAAACCAAGC chr5B_1658 ACTGCAGCCGCAGCGAAAAGAATGTGCACTCCTCTAGAATTAAACCAAGT chr1D_1658 ACTGCAGCCGCAGCGAAAAGAATGTGTACTTCTCTGGAGTTGATCCAAGC chr7B_1658 ACTGCAGCCACAGCGAACAGAATGTGCACTCCTCTAGAGTTAAACCAAGC chr4A_1658 ACTGCCGCTGCAGCGAAAAGAATGTGCACTCCTCTAGAGTTGATCCAAGC chr2A_1659 ACTGCAGCCGTAGCGAAAAGAATGTGCACTCCTCTAGAGTTGATCCAAGC chr3B_1659 ACTGCAGCCGCAGCGAAAAGGATGTGCACGCCTCTAGAGTTAAACCAAGC chr3B_1659 ACCGCAGCCGCAGCGAAAAGAATGTGCACACCTCTAGAGTTAAACCAAGC chr5B_1659 ATCGCAGCCGCAGCGAAAAGAATGTGCACACCTCTAGAGTTAAACCAAGC SNPs -----------------------------S-------------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 CCGCTGAGCTCTGTGCATAAAATGAACGACGTCTGTGGAAGTAGAGGCTA chr3D_1657 CCGCTGAGCTCTGCGCATAAAATGGACAAGGTCCGTAGAACTGGAGGCTA chr2B_1658 CCGCTGAGCTCTGTGCATAAAATGAATGATGTCCGTGGAGGTAGAAGCTA chr5B_1658 CCGCTGAGCTCTGTGCATAAAATGAACGATGTCCGTGGAGCTAGAGGCTA chr1D_1658 CCGCTGAGCTCTGTGCATAAAATGAACGAGGTCCGTGGAACTGGAGGCTA chr7B_1658 CCGCTGAGCTCTGTGCATAAAATGAACGATGTCCATGGAGCTAGAGGCTA chr4A_1658 CCGCTGAGCTCTGTGCATAAAATGAACGATGTCCGTGGAGCTAGAGGCAA chr2A_1659 CCGCTCAGCGCTGTATATAAAATGAACGATGTTCGTGGAGCTACAGGCAA chr3B_1659 CCGCTGAGCTCTGTGCATAAAATGAACAATGTCCGTGGAGGTAGAAGCTA chr3B_1659 CCGCTGAGCTCTGTGCATAAAATGAACGATGTCCGTGGAGGTAGAAGCTA chr5B_1659 CCGCTGAGCTCTGTGCATAAAATGAACGATGTCCGTGGAGGTAGAAGCTA SNPs -----------------------------S---S---------------- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 GGTCATTCATATGGAACGCAGCCCAGAGAACAGAGGCTGGATAGCATCGC chr3D_1657 GGTCGTTCATATGGAGCGCGTCCCAGATAACAGAAGCCGGATAGCAACGC chr2B_1658 GGTCGTTCATATGGAACGCGGTCTAGATAACAGAGGCTGGATAACAGCGC chr5B_1658 GGTCGTTCATATGGAACGCGGCCCAGATAACAGAGGCCGGGTAGCAGCGC chr1D_1658 GGTCGTTCATATGGAGCGCGTCCCAGATAACAGAAGCCGGATAGCAGCGC chr7B_1658 GGTCATTCATATGGAACGCGGCCCAGATAACAGAGGCCGGGTAGCAGCGC chr4A_1658 GGTCGTTCATATGGAACGTGGCCCAGATAACCAAAGCCGAGAAGCAGCGC chr2A_1659 GGTCGTCCATATGGAACGCGACCCAGATAACAGAAGCCGGGTAGCAGCGT chr3B_1659 AGTCGTTCATATGGAACGCATCCCAGATAACAGAGGCCGGATAGCAGCGC chr3B_1659 GGTCGTTCATATGGAACGCGGTCCAGATAACAGATGCTGGATAACAACGC chr5B_1659 GGTCGTTCATATGGAACACGGTCCAGATAATAGAGGCTGGATAACAACAC SNPs ---------------------------S------------------S--- forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 AGAATGATGTGGCTGGCAGACTATAACTATATTTACGCGATATTGTATTC chr3D_1657 AGAACAATGTGGCTGGCAGACT---------------------------- chr2B_1658 AGAACAATGTGGCTGGCAGACT---------------------------- chr5B_1658 AGAACAATGTGGCTGGCAGACT---------------------------- chr1D_1658 AGAACAATGTGGCTGGCAGACT---------------------------- chr7B_1658 AGAACAATGTGGCTGGCAGACT---------------------------- chr4A_1658 AGGACAATGTGGCTGGCAGA------------------------------ chr2A_1659 AGGACAATGTGGCTGGCAGACT---------------------------- chr3B_1659 AAAACAATGTGGCTGGCAGACT---------------------------- chr3B_1659 AGAACAATGTGGCTGGCAGACT---------------------------- chr5B_1659 AGAACAATGTGGCTGGCAGACT---------------------------- SNPs ----SS----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TTGGTCATTTGTTGTTTGCAGGCACGCAATTGCTACAGTTTTAACCATAT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TAATTTCCTATGTCCCATCAACACATTTTCGTCAATGATTTTATATTGTA chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 -------------------------------------------------- chr6B_1_TraesCS6B01G002400 TGGGACTGGAGCATGGCTATTATTTCCTTTTCTTTGATCATATGAATGCT chr3D_1657 -------------------------------------------------- chr2B_1658 -------------------------------------------------- chr5B_1658 -------------------------------------------------- chr1D_1658 -------------------------------------------------- chr7B_1658 -------------------------------------------------- chr4A_1658 -------------------------------------------------- chr2A_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr3B_1659 -------------------------------------------------- chr5B_1659 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 -------------------------------------------------- reverse_1326 -------------------------------------------------- forward_697 -------------------------------------------------- reverse_1576 -------------------------------------------------- input_sequence_81205 ------------------------------------------------- chr6B_1_TraesCS6B01G002400 TAAGCTGAGATTGCCAGATCGGATTTGTACAGAGGCATCACTAATTAGA chr3D_1657 ------------------------------------------------- chr2B_1658 ------------------------------------------------- chr5B_1658 ------------------------------------------------- chr1D_1658 ------------------------------------------------- chr7B_1658 ------------------------------------------------- chr4A_1658 ------------------------------------------------- chr2A_1659 ------------------------------------------------- chr3B_1659 ------------------------------------------------- chr3B_1659 ------------------------------------------------- chr5B_1659 ------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_124 ------------------------------------------------- reverse_1326 ------------------------------------------------- forward_697 ------------------------------------------------- reverse_1576 -------------------------------------------------