>input_sequence_81194
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-------------------------------------------------------ATGGCACCCAAGGCGGAGAAGAAGC
CGGTGGCGA------CGGAGAAGGCCCCGGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
AGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGT
GCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCG
GCGAGTCCGCCAAGCTGGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTC
CTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCAGCCTAG--------
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>chr6A_1_TraesCS6A01G040500
CCAGCCACAACAAAAACAGAGACCGCCGGGGCGCCAACCACCATCACAGCATCTGCGTCCTCCACGCCCTGGCCAGATCC
ACCCGGAACCTCGCCAGCCCACACCGGAGCAGCATGGAGCCAGCCGCATCACCACCACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAACCGCTAACACTAACTGGATTTGGGTAGGGACTCCCAGATCCGCCGCCAACACGTCTCGGGACCTCGGAGGCCCA
CAAGCCATCATTGCATGGGGAGGGGGAGGCGGCAGCTTCAGTGGGCCACTAGGACGTTGAGAGGAGGGGGCGGAGCAGAA
GCAGGCCCGCCGCCGCCGAACAGAAGGAGAGGAAATGGGTCATCGCG-CGGGGTTGGCCTTAATCCAACATA-TATGTAT
TTAAAAAGTGTAAATAACCAAATATACCTTTTTTACGGGAATAGCCAAATACTAGTATACCTTAGTAGGTGACTGGTGAT
AAATGCCCAACAGATTTTGGCCAGGTCACCCATCCGCGCCAAAACGAACGCTGTCCGTCCATCTCAAACACCAGCGAACG
GCTGGAACTACTCCGAGGCATCGATCCGGAGCACCAACCTATCCACCAATCACAGCTCGCTTCCTTCCTCCTTCCTCCTT
CCTATTTAACGATCTCGCCGCCTCCT-CCGCCTCCTCCCATCGCAGCATCTGAACACTCCGCCT-CCCGCATCTTGCCGC
GAAACTCCACCTCTCC-------GCACCCTCGATTAGT----AGCACCAGCGTTCATGGCACCCAAGGCGGAGAAGAAGC
CGGTGGCGA------CGGAGAAGGCCCCGGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
AGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGT
GCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCG
GCGAGTCCGCCAAGCTGGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTC
CTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCAGCCTAGG-------
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------------------------------------------------------------------CTTCATC-------
GGACGAATGGATGGTCGCATTCTGTATGTAGTTAGCTGCCAGTTTGTGTTCTGAAGATGTTATCTTGTGAGAATCAGATT
GTATCGCCTGTCGGTCTGAAGAAATAGTAATGCTCTTTTCAGTGGAACTTTCTGCCTTCGTCTGATTCTTGAGTC-----
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-------------------------CTGCAGATACAACCTCTGAAGTTGTAGAGAGATTGCTTTTGTTCTAACTATAATT
CTAGTACA-------------------------------------------------AGAACTGTCCATTG--TGTTGCG
----AGGCAGCTAGGCTTTGAATCTTTGACCAGGAGGCCTTGC--------------------------TGAAAAGGAAG
GGATTACTGTCTCCACGATCGACCTGCATATTTTGTGTTCTCTGTTCTACAATGTGACCGAGACGTGAAGGTTGCATATG
CACAATGGAGAGGCTGAATAGCACTGATGAGTAGGCACGTGTAG-AAATTCG-GTGTCAAGATGGATGATAAATTTGGTG
ATGTTTATGCAAATTTGCCGAGCAAGCTCCCTCTGATGCAAATGGAGTTTTGGTGAGTGCATTTGATGAATCATTCCGGG
TCAGGCAAGAATGAACACTGTACATGCTATTTCTATCACCTTTTTTTTTGCGGGGTGTTACTCCTATTACTTACCATCAT
GCAAAAGAGTATCAGTTCAGAGCATGGTGAAGTAGCAC--AAACGATCAGTTGAAGTAAACAATGCCGTTACTCTTAAAC
TAATGTTGATCTCTTCCGACTTCCGTGGATCCACAAACAAAATGCAGACAGATAAGTGTACCCGAGAGGAAGATCAGAGA
ACGTACACACTTTCTTTAGAATATAACTCAGAGCAACTTTAACAAAGGTGCATATATTTGAC-----AAAAAAAGGCGCG
TAGAGTA-CCGTTTAGAAGAAATTTGGGAAAAAATGGTCTCCAACAGATCCTGTAAACATAGAATAAATTTAGAGGATCA
TGCAAATTTGACATGAACATCCCTCTACTTTAGGGGAAGTATTACAACCCGTAATATTTTGGCCAACTGAAAC
>chr6D_571
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----------CGCCGCCGAACAGAAGGAGACGAAATGGGTCATCGTGTCGGAGTTGGCCTTAGTCCAACATATTATGTAT
TAAAAAAGTGTAAATAACCAAATATACCTTTTTTACGGGAATAGCCAAATAC-AGTATACCTTAGTAGGTGGCTGGTGAT
AAATGCCCAACAGATTTTGGCCAGGTCACCGATCCGCGCCAAAACGAACCCTGTCCGTCCATCTCAAACACCAGCGAACG
GCTGGAACTACTCCGAGGCATCGATCCGGAGCACCAGCCCATCCACCAATCACAGCTCATCTCCTTCCTCCTTCCACCTT
CCTATTTAACGATCTC---------T-CCGCCTCCTCACATCACAGCATCTGCACACTCCGCCT-CCCGCCTCTTGCAGC
CTAACCCCACCTCTCGAGTCTCGACACCCTCGAAT------------CAGCGTCCATGGCACCCAAGGCGGAGAAGAAGC
CGGTGGCCA------CGGAGAAGGCTCCAGCGGGGAAGAAGCCCAAGGCAGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
GGCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGT
GCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCG
GCGAGTCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTC
CTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCAGCCTAGG-------
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------------------------------------------------------------------CTTCATC-------
GGACGAATGGATGGTCGCATTCTGTATGTAGCTAGCTGCCAGTTTGTGTTCTGAAGATGTTATCTCGTGAGAATCAAATT
GTATCGCCTGTCGGTCTGAAGAAATAGTAATGTTCCTTTCAGTGTAACTTTCTGCCTTCGTCTGATTCTTGAGTC-----
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-------------------------CTGCAGATACAACCTCTGAAGTTGTAGAGAGATTGCTTTTGTTCTAACTATAATT
C---TACA-------------------------------------------------AGAACTGTCCTTTG--TGTTGCG
TTCCAGGCAGCTAGGCTTTGAATCTTTGACCAGGAGGCGTTGC--------------------------T----------
-----------TCCACGATTGACCTGCAGATTTTGTGTTCTCTGTTCCACAATGTGATCGAGACGTGACGGTTGCATATG
CACAATGGAGAGGCTGAATAGCACTGACGCGTAGGCACCTGTAG-AAGAAATTGTGTCAAGATGGGTGATAATTTTGGTG
ATGTTTATGCAAATTTGCTGAGCAAGCTCCATCTGATGCAAAGGGAGTTTTGGTGAGTGCAGTTGATGAATCATCCCGGG
TCAGGCGAGAATGAACACTGTAAATGC-------------------------------TACTCCTATTACTTACCATCAT
GC-AAAGAGTATCAGTTCAGAGCATAGTGAAGTAGCAC--TAAAACGATCAG--------CAATGCCGTTACTCTTAAAC
TAATGTTGATCTCTTCT-------GTGGATCCACAAACAAAATGCAGACAGACAATTGTACCTGAGAGGGAGATCAGAGA
ACGTACACACTTGTTTTAGAATATAACTCAGAGCAACTTCAACAAAGGTGCATCGATTTGACCCCCAAAAAAAAGGTGCA
TGGAGTACCCGTTTAGAAGAAGTTTGGGCAAAAATGGTCTCGAACAGATTCCGTAAACATGGAATAAAGTTAGAGGATTA
TGTAAATTTGACATGAATTTCCCTCTAGTCCAGGGGAAGTATTACATCCCGTAATATTTTGGCCAACTAAAAC
>chr6D_738
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-------------------GCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGCCGTCAACC-CAAACATCAGCCGACG
GCTGAAACCGCTCCACGGCATCGATCCGAGGCACCAGCTTCTCCACCAACCACAGCCCGCCTCCTTCCTCC-TCCAGTTT
CCTATATAA--ATCTCGCCGCCCCCTCCCTCCTCCCCACATCGCAGCATCTGCATCCCCCGTCG-CCTTCGATCCAAACC
C------CACCTCCCC-------ACAACCTCGAATCATCAGCAGCAGCCGCTCCCATGGCGCCCAAGGCGGAGAAGAAGC
CGGTGGCTA------CGGAGAAGTCCCCGGCGGGGAAGAAGCCCAAGGCTGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
GGCGACAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGT
GCACCCGGACATTGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTTGCCG
GCGAGTCCGCCAAGCTGGCCAGATACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTTGTC
CTCCCCGGCGAGCTCGCCAAGCATGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCGTCAGT
CTCGTTTCTGAACCCGTTGGATTCTGTATGTAGTTAGGTGCAAGATTGTCTTCTGAATTTGTGATCTTGTGCTGCTTGTT
GGTCTGCAGAAATGTTCATGGGACTACTTAATGATATTCTTGCTGCTTGAAGAAATATTGTGTGTCACATCAGATTCTTC
TTGCTGTTGTGTTTTTTGCTACTCGATTTCATCTGGAAGGTGTTTCTGTACCACTTGATGGAACTCTAACATGGCCATGA
ATTACTTCATTTTGCTTCTCTGTACCTTTCCCTTAGCGAGCAGTCTCTGCAGATATTGCCTCTGAATTTGCACGGAGCTT
GCATTTGTTCACATTTTAATTTTGTACTCGTATTTGTAGTTTGTATTTCTATTAAAAATTCGTTATTCTTGTAGTGTTGT
CCATGACGTGTTGTGAGGCAACTAGCTTTAAATCAGATTCATATTCTTATTGCTTTTGTGTCTATTACTATTCGATTTCA
TCTGGAAGAGTTCTGTACCACTTGATGGAAATCTAAGAAAGGCCATGAAATGCTTCGTTTTTCTTCACTGTACTTTTTCC
TTAGCAAACAGTCTCTGCAGATACTGCCTCTGAAGTTGCATGGAGATTGCTTTTATTCTCATTTTAATTCTGTTAATAGT
TCGTTATTCTTGTAGTACTCTGTTCTCCATGTGTTTTCTGTTCCACCAAGTTCACCTCCTCCTAGGCTTCAGACGCGTTT
TTGAATCCGTTGG-----ATTCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTGATC--------------TT
GTGCTGCTTGTGGGTCTGAAGAAATGTTCATGGGACTGCTTAATGAATATTCTTGCCGCTTGAAGAAATATTGCGTGTCA
CATCGGAATCTTCTTGCTGTTGTGTTTTTTGCTACTTGATTTCATCTGGAAGGTGTTTCTGTACCACTTGATGGAACTCC
AGTAGAATTTCATCAGAAACAGTCTCTGCAGATACAACCTCTGAAGTTGCACAAAGCTTGCCTTTGTTCTCATTTTAATT
C---TGTACTAGTATTTGTAGTTTGTATTTCTG----------------------GTAGTACTGTCCATGTCATGTTGTG
----AGGCAGCTAG-CTTTGAATCAGACGAACATACAGA-----------------------------------------
-------------------------------TTTGTGTTCTCTGTTCCACAATGTGATGGAGGCGTGATCGTTCCATATG
CACAATGGAGAGGCTGAATAGCA---------------------------------------------------------
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>chr6D_889
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----------GATCTCGCCGCCCCCT-CCATCTCCCCACACCGCAGCATCTGCAGCCCCACATCACCTCCGATCCAAACC
C------CACCTCCCC-------GCACCCGCGAATCATAATCAGTAGCAGCCCCCATGGCGCCCAAGGCAGAGAAGAAGC
-GGTGGCGA------CCGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
GGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGT
GCACCCGGACATCGGCATCTCCTACAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGTCG
GCGAGTCCGCCAAGCTCGCGCGCTACAACAAGAAGCCCACCATCACCTCTAGGGAGATTCAAACCTCTGTCCGCCTCGTC
CTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCAAGGCTGTCACCAAGTTCACCTCGTCCTAGG-------
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------------------------------------------------------------------CTTCATCCTTGTAT
GGACGAATCGATGGTGGCATTCTGTATGTAGTTAGCTGCCAGTTTGTGTTATGAAGATGTTATCTTGTGAGAATCAGATT
GTATCGCTTGCCGGTCTGAAGAAATAGTAATGTTCTTTTCAGTGTAACTTTCCGCCTTTGTCTGATTCTTGTGCTGACTA
CTATGGTTTGCAATTCCT--------------------------------------------------------------
--------------------------TGCAGATACAATCTCTGAAGTTGTAGAGAGATTGCTTTTGCTC------TAATT
C---TGTACTAGTATTTGTACTTTTCTTTTCTGTCATTAATCCATGATTCATGTAGTACTACTGTCCATCG--TGTTGTG
----AGGCAGCTAGGCTTTGAATCTTTGACTAGGAGGTGCCATTTTGCTGAAAAGGAATGGACTCCTGTT----------
-----------TCCACGATTGACCTGCAGATTTTGTGTTCTCTGTTCCACAATGTGATGCAGACA-GACGGTTGCATACG
CACAATGGAGAGGCTGAA--GCAATGATGCGTAGGCACGTGTTGAAAGAATTTGTGTCAAGATGGATGATAAA-TTGGTG
GTGTTTCTGCAAATTTGCTGAGCAAGCTCCGTCTGTCTGCC---------------------------------------
----------------------------------------------------------------------------TCAT
GC-AAAGAGTATTAGTTCAGAGCATGGTGAAGTAGCAGTAAAACGATCAGTTGAAGTAAACAATGCCGTTACTCTTAAAC
TGATGTTGATCTCTTCT-------GTGGATCCACAAACCAAATGCTGATAGACAATTGTACCTGACACGAAGATCAGAGA
ACGTACACACTTGTTTTAGAATATAACTCAGAGCAACTTCAACAAAGGTGCATAGATTTGACC---AAACAAAAGGTGCA
TAGAGTACCCTTTAGAAGAA------------------------------------------------------------
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>chr6A_958
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----------------------------------------------------------------------------AAAC
T------CATCTCCCC-------ACACCCTCGAATCATCAGCCT---CAGCTCCCATGGCGCCCAAGGCGGAGAAGAAGC
CGGTGGCGGAGAAGGCCGAGAAGACCACGACGGCGAAGAAGACCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGGC
GGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAACAGGT
GCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAGCGACATCTTCGAGAAGCTCGCCG
GGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACGTCAAGGGAGATCCAGACCTCCGTCCGCCTCGTC
CTCCCTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGG-------
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------------------------------------------------------------------CTTCATCCTCGTTT
CTCAATCCGTTGG-----ACTCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTAATC--------------TT
GTG-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------------------S--------------S-----S----------S-----------------
-S--------------------------------------------------S------------------S--------
------------------------------S------------------S------------------------------
------------------------------------S-----------------------S--------------S----
----------------------S--------------S--------------S-----------------S------S--
SS---S---------------------------S-SS---------S------S--------------------------
----------------------------------S---------------------------------------------
S-------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
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-SSS----------------------------------------------------------------------------
--------------------------------------S-------------------------------SSSSSSSSSS
SSSSSSSSSSS--------S--------S------------------S---------S----------S-----------
-----------------------------S-----------------SSSSS----------------------------
------------------S-----------S-----------S------------------S------------S-----
------S---------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--S-----------------------------------------------------------------------------
----------------SSSSSSSS----------------------------S--S------S-----------------
------------SS-------------------------S--------------S---------------------S--S
---------------------S------S------------S-------S-S--------S-------S---------S-
--S--------------SS--------S-SS---------------S---------------------S----
>forward_501
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-AAGCCATCATTGCATGGGGA-----------------------------------------------------------
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>reverse_2647
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------CTGTCTCCACGATCGACCTG------------------------------------------------------
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