>input_sequence_81170
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-------------------------------------------------------------ATGGAAGGCGAGAGCTTCT
CGGGGATGGGCAATGGAGGCGGCGGCGG---CGGCGGCGGCGGAGGGGGGCACCACCAGGTGGTGGACGGGAAGCTGATC
CAGACGTTCCACAAGAGCTTCGTACAGGTGCAGAGCATCCTGGACCAGAACCGGATGCTCATCTCCGAGATCAACCAGAA
CCACGAGTCCCGGGCGCCGGACAGCCTCACCCGCAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGCGTCG
TCGGCCTCTACGCCGACCTCTCTGCCTCCTTCGCGCACCGTGGCGCCGCCATGGACGGCGGCTCCTCGGAGGGCGACTCC
TCGGGCACGCTGCGCTCCTCCGATGCCGCCGGCCGCGCCGCCGC---CGCCGGACAGAAGCGCGTCCGGCCCGGCTAG--
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>chr4D_1_TraesCS4D01G149000
TCTCTCCCTCTCTCTCTCTCTCTCCTTGTGTGTGTGTTTTTTCCTGGGAGAAGAAAGAGGGACAGAGAGAG--GAATAAA
AAGGTGGGCAAGGACATGGAGATGGCCATGATTTCACCTCAGGCCCTTCCTCTCTCCCCAAACACTTCCCGATAGATTCC
ATCCCCTCTCTATCATCCTGGGTTTCCTCCCACCTTTTTCTCATCTTAATTGCAAAGGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTC
TAGATGATAGAGCCAGCCGGCCGGCTCCCCTGATGCTTGGATT-----TTATTTTCTAGGAGGAAATTCAGAGAGGTGAT
TTATTGTCTTGGGTTTCATCTTCACACTGGTTTTCACATGC-----------AACCCGCTGCCTCGATTGCGTGCTAGTA
TTGCCTT---GTACTAGTACAATACCCGCACATTTATTCTTTGTGCTAGTAGACTAGATGTTCTTGATGGGTCTTTATTT
GTTTCCAGTACAGCCCGATCCCCACATAAATGCAAAGTTTAGCCAACTAATTTTGTAATTTATGGGTCAATTTCAGGGGA
CACTCTAGCTAGCTCTGGTGAAGAAGAATCAACAAGAGTGAGTTTGGAGAGGGAGAAAGGGATGGAAGGCGAGAGCTTCT
CGGGGATGGGCAATGGAGGCGGCGGCGG---CGGCGGCGGCGGAGGGGGGCACCACCAGGTGGTGGACGGGAAGCTGATC
CAGACGTTCCACAAGAGCTTCGTACAGGTGCAGAGCATCCTGGACCAGAACCGGATGCTCATCTCCGAGATCAACCAGAA
CCACGAGTCCCGGGCGCCGGACAGCCTCACCCGCAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGCGTCG
TCGGCCTCTACGCCGACCTCTCTGCCTCCTTCGCGCACCGTGGCGCCGCCATGGACGGCGGCTCCTCGGAGGGCGACTCC
TCGGGCACGCTGCGCTCCTCCGATGCCGCCGGCCGCGCCGCCGC---CGCCGGACAGAAGCGCGTCCGGCCCGGCTAGCT
TGGCCCGACCGGATGGTA----------CTTGGCATCGCCATGGATGCTGTGTAGCAGCTAGCGAGGAAGGATGTGAGTT
ACTGATGAGATGTTTGCTACTCCTACTTACTACTAGTACTAGGCTAGTTCTTCCTTGCTTAACTTCTTGCCGTGCTTCTT
CTTCTTCTTTGCCGCAAAGTGCTTCTTCAA---CCCTGATGGTGAGAAAAAAAAATAACTTTTCTGTACAAGTCCATGTG
ACGATGAGCAAAAAACACCAGTTCTTGATAATCTGCAGCCTTACTA---CATGTAGAATCTAGTCACCTGGCTGATCTCA
GGTATGCCAGCCAGGTATACAGTTAATCTGAGAGATCTGGGAGTTCTTGAGTAGTATTTTCTTCTTACTTTGGTAATTTG
AAACTATCTTTCTCTAGGTGATTTGTGAGGGGAAAATTAAAATACCGTTGCCCTTGGATTGGGATGGACCATGTTGATCC
TGAAATTCGCATGTACTGATGCAAAGTGCAAAGCTTTACAGCTTTTACCAATCTGCTGCTGCTCCCCCCCTTCTCCCCTG
TCATCTTTCCCTTCTGTCCTGTTGCAAACCA-------------------------------------------------
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------TGATGAAAAGTTTGATGAC-----GACTTGCTTCTACTGCTAGATAAGCTCACTCATCATCTGATGAGTTGGTG
GAGTGTAGATAAGGTTCTCCTTTTGTGCATGCCCAAGTAGCCAAAAAATAACATGGGGGTGTTCTTTCTTTCT----AGT
GGGCATCTGCAAGATGCTGGACATCATCAGCGGCAGGAGGAGGACAGAAAAAAAAGGTTGCAATAATTTTTGGGCTGCCA
ATCATAGTTTACAAAACCATGGCCAGAATCTTATTTGAGACAGTGGCCTCTGGCC--TGTGTGTGTGGCATCTTGCTCGG
TCCCTGATCTA--AGCATACGAACCTTTTTGACCACTGATTTGGCATGCTGAATAGTGTCAATGGGTGCCCATTTGTTAT
CTGTCTACGGTAACAAACCCAAAAAGTAATCTACCTCTTTAT
>chr4A_1
TCTCTTCCTCTCTCTCTCTCTTTCCTTGTGTGTG-----GTTTCTGGGAGAAGAAAGAGGGACAGAGAGAGAGGAATAAA
AAGGTGGGCAAGGACATGGAGATGGCCATGATTTCACCTCAGGCCCTTCCTCTCTCCCCAAACACTTCCCGATAGATTCC
ATCCCCTCTCTATCATCCTGGGTTTCCTCCCACC-TTTTCTCATCTTAATTGCAAAGGTTTCTGCGGGATAACATTTGTT
TTGGTGAGTCCTATACAATCTTTCCCTTCTTTTTATGTTGCTTTTCTCACTCCCCCCTCCG-CTCGTATTTCAACTTCTT
GAATCCCATGCGCACAATGGTA---GTACCTACTTGCGGC----------------------------------------
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---------------------------------------------------------------------------CATTC
TAGTTGATAGAGCCAGCCGGCCGGCTCCCCTGATGCTTGG--------TTATTTTCTAAGAGGAAATTCAGAGAGGTGAT
TTATTGTCTTGGGTTTCATCTTCACAATGGGTTTCACATGCAGATTTTTTTTAACCCGCTGCCTCGATTGCGTGCTAGTA
TTGCCTT---GTAC------AATACCCGCACATTTATTCTTTGTG--------CTAGATGTTCTTGATGGGTCTTTATTT
GTTTCCAGTACTGCCCGATCCCCACATAAATGCAAAGTTTAGCCAACTAATTTTGTAATTTATGGGTCAATTTCAGGGGA
GACTCTAGCTAGCTCTGGTGAAGGAGAATCAACAAGAGT----TTGGAGAGGGGAAAAGGGATGGAAGGCGAGAGCTTCT
CGGGGATGGGCAATGGAGGCGGCGGCGG---CG---------GAGGGGGGCACCACCAGGTGGTGGACGGGAAGCTGATC
CAGACGTTCCACAAGAGCTTCGTGCAGGTGCAGAGCATCCTGGACCAGAACCGGATGCTCATCTCCGAGATCAACCAGAA
CCACGAGTCCCGGGCGCCGGACAGCCTCACCCGCAACGTCGGACTCATTCGGGAGCTCAACAACAACATCCGCCGCGTCG
TCGGCCTCTACGCCGACCTCTCCGCCTCCTTCGCGCACCGTGGTGCCGCCATGGACGGCGGCTCCTCGGAGGGCGACTCT
TCGGGCACGCTGCGCTCCTCCGATGCCGCCGGCCGCGCCGCCGCCGCCGCCGGACAGAAGCGCGTCCGACCCGGCTAGCT
TGGCCCGACCGGATGGTGCCTGCCGTTTCTTGGCATCGCCATGGATGCTGCA------CTAGCGAGAAAGGATGTGAGTT
ACTGATGAGATGTTTGCTACTCCTACT---TACTAGTACTAGGCTAGTTCTTCCTTGCTTAATTTCTTGCTGTG---CTT
CTTCTTCTTTGCCGCAAAGTGCTTTTCCTCAACCCTTGATGGTGAGAAAAAGGAA-AACTTTTCTGTACAAGTCCATGTG
ACGATGAGCAAAAAACACCAGTTCTTGAGAAACTGCAGCCTTACTATTACATGTAGAATCCACCGTTCCATGGGCTCCTG
GCTG---------------------ATCTGAGAGATTTGGGAGTTCTCGAGTATTTTGT--T-CTTATTTTGGTAATTTG
AAACTTTCT----CTAGGTGATTTGTGAGGGGGAAATTAAAATACCGTTGCCCTTGGATTTGGATGGACCATG-TGATCC
TCAAATTCGCATGTACTGATGCAAAGTGCAAAGCTTTACAGCTTTTACCAATCTGCTGCTGCTCCCCCC-TTCTCCCATG
TCATCTTTCCCTTCTGTCCTGTTGCAAACCA-------------------------------------------------
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------TGATGAAAAGTTTGATGACCAAACGACTTGCTTCTAGTGCTAGATCAGCTCACTCATCATCTGATGAGTTGGTG
GAGTGTAGATAAGGTTCACCTTTTGTGCATGGCAAAGTAGCCAAAAAATAACATGGGGGTGTTCTTTCTTTCTTTCTAGT
GGGCATCTGCAAGATGCTGGACATCATCAGCAGC---AGGAGGACAGAAAAAAAAG-TTGCAACAATTTTTGGGCTGCCA
ATCATAGTTTACAAAACCATGGCCACAATCTTATTTGAGACAGGGGCCTC--GCC--TGTGTGTGTGGCGTCTTTCTCGG
TCCCTGATCTATAAGCATATGAACCTA-TTGACCACTTATTTGGCATTCTGGACAGTGTCAACGGGTGCCCATTTGTTCT
CTGTCTACGGTAACAAACCCAACAAGTACTCTACCTCT----
>chr4B_4
CTCCCATCTCTTCCTCTCTCTCTCCT-----GTGTGTGTGTTTCTGGGAGAAGAAAGAGGGACAG--AGAGAGGAATAAA
AAGGTGGGCAAGGACATGGAGATGGCCATGATTTCACCTCAGGCCCTTCCTCTCTCCCCAAACACTTCCCGATAGATTCC
ATCCCCTCTCTATCATCCTGGGTTTCCACCCACC-TTTTCTCATCTTAATTGCAAAGGTTTCTGCGGGATAACATTTGTT
TTGGTGAGTCCTATAGAATCTTTCCCTTCTTTTTATGTTGTTTTTCTCACTCCCCCCCTCCCCTCCTATTTCAACTTCTT
GAATCCCATGCGCACAATGGTACTAGTACCTACTTGCGGC----------------------------------------
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---------------------------------------------------------------------------CATTA
TAGTTGATAGAGCCAGC--GCCGGCTCCCCTGATGCTTGGATTTTATTTTATTTTCTAGGAGGAAATTCAGAGAGGTGAT
TTATTGTCTTGGGTTTCATCTTCACGCTGGTTTTCACATGC-----------AACCCGCTACCTCGATTGCGTGCTAGTT
TTGCCTTGTAGTAC------AATACGCGCACACTTATTCTTTGTG--------CTAGATGTTCTTGATGGGTCTTTATTT
GTTTTCAGTACAGCCCGATCCCCACATAAATGCAAAGTTTAGCCAACTAATTTTGTAATTTATGAGTCAATTTCAGGGGA
GACTCTAGCTAGCTCTGGTGAAGAAGAACCAACAA----GAGTTTGGAGAGGGAGAAAGGGATGGAAGGCGAGAGCTTCT
CGGGGATGGGCAATGGAGGCGGCGGCGGCGGCG---------GAGGGGGGCACCACCAGGTGGTGGACGGGAAGCTGATC
CAGACGTTCCACAAGAGCTTCGTGCAGGTGCAGAGCATCCTGGACCAAAACCGGATGCTCATCTCCGAGATCAACCAGAA
CCACGAGTCCCGGGCGCCGGACAGCCTCACCCGCAACGTCGGCCTCATCCGGGAGCTCAACAACAATATCCGCCGCGTCG
TCGGCCTCTATGCCGACCTCTCTGCCTCCTTCGCGCACCGTGGCGCCGCCATGGACGGCGGCTCCTCAGAGGGCGACTCC
TCGGGCACGCTGCGCTCCTCCGATGCCGCCGGCCGCGCCGCCGC---CGCCGGACAGAAGCGCGTCCGGCCCGGCTAGCT
TGGCCCGACCGGATGGTGCCTGCCGTTTCTTGGCATCGCCATGGATGCTGTGTAGCAGCTAGCGAGAAAGGATGTGAGTT
ACTGATGAGATGTTTGCTACTCCTACTTACTACTAGTACTAGGCTAGTTCTTCTTTGCTTAATTTCTTGCCGTG------
CTTCTTCTTTGCCGCAAAGTGCTTCCTCAA---CCCTGACGGTGAG--AAAAAAATAACTTTTCTGTACAAGTCCATGTG
ACGATGAGCAAAAAACACCAGTTCTTGATAATCTGCAGCCTTACTATTACATGTAGAATCTAGTCACCTGGCTGATCTCA
GGTATGCCAGCCAGGTATACAGTTAATCTGAGAGATTTGGGAGTTCTTGAGTATTTTGT--TTCTTACTTTGGTAATTTG
AAACTATCTTTCTCTAGGGGATTTGTGAGGGGAAAATTAAAATACCGTTGCCCTTGGAT-TGGGTGGACCATG-TGATCC
TGAAATTCGCATGTACTGATGCAAAGTGCAAAGCTTTACTGCTTTTACCAACCTGCTGCTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTGATGAAAAGTTTGACGACCAAACGACTTGCTTCTACTGGTAGATCAGCTCACTCAGCATCTGATGAGTTGGTG
GAATGTAGATAAGGTTCTCCTTTTGTGCATGCCCAAGTAGCCAAAAAATAACAGGGGGTG-----TTCTTTCTTTCTAGT
GGGCATCTGCAAGATGCTGGACATCATCAGCGGCAGGAGGAGGACAGAAAAAAAAG-TTGCAGTAATTTTTGGGCTGCCA
ATCATAGTTTACAAAACCATGGCCAGAATCTTATTTGAGACAGTGGCCTCTGGCCGGTGTGTGTGTGGCATCTTTCTCGG
TCCCTGATCTA--AACATATGATCCTTTTTGACCACTGATTTGGCATGCTGGACAGTGTCAATGGGTGCCCATTTCTTAT
CTGTCAACGGTAACAAACCCAACAAGTAATTTACCTATTTAT
>SNPs
-----S-------------------------------S-S--S-------------------------------------
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----------------------------------S-------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---S----------------------------------------------------------------------------
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--------------SSSSSS-------------------------SSSSSSSS---------------------------
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S-------------------------------------------------------------------------------
---------------------------------SSSSSSSSS--------------------------------------
-----------------------S--------------------------------------------------------
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-----------------S------------------------------------------------S-------------
--------------------------------------------------------------S-----------SSS---
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------------------------------------S----------------S-S-S-SS-------------------
------------------------------------------------------------S------------S------
---------------------------------------------------------------------S-------S--
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---------------------------------------------------S----------------------------
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--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------S-----
-------------------S-------------------------------S-S--------------------------
----------------------S-------------------
>forward_961
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-------------------------------------------------------------ATGGGTCAATTTCAGGGGA
C-------------------------------------------------------------------------------
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>reverse_2555
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--------------------------------------------------------------------------GCTCGG
TCCCTGATCTAAGC------------------------------------------------------------------
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