>input_sequence_81155
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------------------------------------------------------------------------------AT
GGCGCCCAAGGCTGCCGAGAAGAAGCCGGCAGAGAAGACCCCCGCGGGCAAGAAACCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCGGGGGCGAG---AAGAAGGGGAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGGATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTGGCCGGCGAGTCGGCCAAGCTGGCGCGGTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTC
ACTTCCGCCTGA--------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G099000
CGGTGAATATTTCTCTATGATGCCGAGACTGAATACCGAGACCCGTCGAATTTGAAGCATGTCCATGCTCCAAGGAATCG
AATAAAGTTGCGAATTTTTCTTCAATGGCCTTGCATGTCATGAAATCAAGGATGATATCATGAATTAAGAGCGAATCCCA
CATGTATCGTACTCCCTCTGTTCCTAAATATATGTCTTTATAGAGATTTCACTGTAGACTATATACGGAGCAAAATGAGT
AAACCTATTTTCTAAAAGACGTCTATATACATCAGAATGTAGTCTTTATAGTGAAATCTCTAAAAGGACTTATATTTAGG
AATGAAGGAAGTAGATTAACTCCATAGTACTCCCTACGTTTCTTTTTAGTCCGCATATAAGGTTTGGTCAAAGTCAAGCT
TTATAGAGTTTGACTAAATATTAAAATATATAAACATTCACAATATGAAATCAATATTATCAGATGCATCATGAAACATT
TTTTTCATATTATATAATTTTAGTATTGTAGATGTTCATATTTTTTTATATAAATTTGGTTTGTGTAGTTTGACTTTGAT
CAAATCTTATATGCGGAGTTAAAAGAAACGGAGTATATTGTTGACTCATGAAGTTGAACCATACATTGATGGTTCGTTAC
TTTGGGGAAATATATACAAGCAAG--------------------------------------------------------
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---------------------------------------------------------------TGCTTTGCAGCAGAAAA
AATGTCGATCGAAATTTGAACTCAAATTCCCGCCACGGTGAAACTCCAATGCGCGCGCATGGGCCGAAACCCGTCTGCTC
CCC--GCCCACCTTCTTTCCGCCACGTCAGCGATCCACGCCAAGGCGCATCTGGGTCGTCCATCGCACACCGCGGCGGAC
GGCCGATATCATATCGATCCGTGGCACCCAT------------------CCGCCTCCCTCCTCGTATAAA----------
----------------------------------------CTCGCCGCGCCCTCGCCGGTTATCCATCACCGTTCCTCCC
ACCTCCCAGCGAAGCCACGCACAC---CACACCAGAGCACCTCTCCCCGT------CGCCGCCGCCGCAGCAGCATCCAT
GGCGCCCAAGGCTGCCGAGAAGAAGCCGGCAGAGAAGACCCCCGCGGGCAAGAAACCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCGGGGGCGAG---AAGAAGGGGAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGGATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTGGCCGGCGAGTCGGCCAAGCTGGCGCGGTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTC
ACTTCCGCCTGATTCGGCT--------------------------------GATGGATCGA-------TGTCACCCT---
GTAGTTTCCTGTTCGTGCTCTGTCCTCTTGTAACTTGTCCTGG-------TTGTGTGGGATCACATCTCATGATCCGGAG
AAATAGTAACAGCGCTTATTTCAGTTC-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGCCATGATCCTGTTTGTGCTACTTT-GTCTTGG
TTCGATCTGTGGTGC----AAGCTCACCTTTTCTCTGTAGATCTCTGCGG-CAACGACCCTGAACTTGCAGATATGTCTC
TCTGTTTCAATTCTTAATTTCGG-TTTCAGCCAACTGTTTAGCACCCTGTTTCAGTTAACTGCTGAAGTGTCGATATCTT
CAGACAAA----------CTCAATTTCAG------CTCCCGACCTTCTCAAT--CTCGCTGAATGGCCATGATCCCCC--
-------AGTTGCTCATGCAGATGTTGCTGTTACTGCTTACGTGTGCACAATTTGTCCGTCCATTTTTCTCTCGTGGTGT
TTATTTGTTGTATCATTGCTCGAACATAAGATGAAAATGTTTGGGTTCAGTCAGCGCAGCACGTTACGGTAGGATATTGA
GGTTAATGGATCAGGCAAGCTTGTTCTAGCCGAGGAGAGGATGTTTATTTAGGGAAGATGCACATAAACTTTTCTTGTGC
TGAAATGCATATTTTGTACCATGTGTACTTTCTTTCTCCACTTCTTGTAATAATGTAATGACA---TTGTTCTTGGGAGT
ACATGGTATGCATATCGTTCACATTAGTTTGATGGAACAGCCGCGATCGTTTCGTTTCGTCTCGTCATCAGAAGTGTAAA
GGAAGAGAATGGGCGGCGAGCATTGGTGCAAGCTGAACTTTACTCGATTATTCTCTGATGGTGCCTGAGATGAAGTTAAT
GGTTTTAGTGCTTTGCCTTGGTCTGGAGTCAACATC-TGGCGGTAAATTGTGCTGATGTTCCATGCGAAATTTATGCGTG
TTGGAAGGTCATATAATAAGCGTGCGGGAGCAAAATGAATTTGGGACAACACCGGGTTTCCGCACCTGAATATATTC
>chr3B_1
CGGTGAACATTTCGCTATGATGCTGAGACTGAATACCG-GACCCGTCGAATTTGAAGCATGTCCATGCTCCATGAAATCG
AATAAAGTTGCGAATTTTTCTTCGACGGCCATGCATGTCATGAAATCGAGGATGATGTCGTGAATTAAGAGCGAACCCCA
CATGTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTAGATTAACTCCAT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGTATATTGTTGACTCATGAAGTTGAACTATCCAATGGTGGTTCGTTAC
TTCCGGGAAA--TATACAAGTAAG--------------------------------------------------------
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---------------------------------------------------------------TGCTTTGCAGCAGAAAA
AATGTCGATCGGAAATTGAACTCAAATTCCCGCCACGGAGAAACTCCAATACGCGCGCGTGGGCCGAAACCCGCCTGCTC
CCCCCGCCCACGTTCTTT-CGCCACGTCAGCGATCCGCGCCAAGGCGCATCTGGGTCGTCCATTGCGCACCGCGGCGGAC
GGCCGATATCATATCGATCCGTGGCACCCATCCGTCCACCAATCAGAGCCCGCCTCCCTCCTCATATAAA----------
----------------------------------------TTCGCCGCGCCCTCGCCGTTTATCCACCACCATTCCCCCC
ACCTTCGAGCGAAGCCGCGCACAG---CACACCAGAGCACCTCTCCCCGT------TGCAGCAGCAGCAGCAGCATCCAT
GGCGCCCAAGGCTGCCGAGAAGAAGCCGGTGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCG---GCGAG---AAGAAGGGGAAGAAGAAGTCCAAGAAGAGCGTAGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGGATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTCGCCGGCGAGTCCACCAAGCTGGCGCGGTACAACAAGAAGCCCACCATCACATCCCGGGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCTGTCACCAAGTTC
ACCTCCGCCTAATTTGGCACGTCGTCC--GTGTGTCTTCTCTGGTG-----GATGGATCGA-------TGTCACCCT---
GTAGTTTCCTGTTCGGACTCTGTCCTCTTGTAACTTGTGCTGG-------TTGTGTGGGATCATATTTCATGATCCGGAG
AAATAGTAA---------TTTCAGTTC-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGATATGAT-------------------------
----------TGTGC----AAGCTCGCTTTTTCTCTGTAAATCTCTGCGG-CAACGACTCTGAACTTGCAGATATGTTTC
TCTGTTTCAATTCTTAATTTCAG-TTTCAGCGAAGTGTTTAGTGCCCTGTTTCAGTTAACTGATGAATTGTGGATATCTT
CAGACAAA----------CTCAGTTTCAT------CTGCCGACCTTTTGTCATGCTCGCTGAATGGCCATGATCCCCC--
-------AGAAC--------------------------------------------------------------------
-----------------------------------------------------------------------GGATCGTGA
GGTTAATGGATCAG----GCTTGTTCTAGTCGAGGAGAGGATGTTTATTTAGAGAAGACGCACATAAACTTTTCTTGTGC
TGAAATGCATATTTTGTACCATGTGTATTTTCTTTCGCCACTTTTTGTAATAATGTAATCACATTGTTGTTCTTGGGAGT
ACATGGTATGCAAATC----------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr3B_1
CGGTGAATATTTCGCTATGATGCTGAGACTGAATACCGAGACCCGTCGAATTTGAAGCATGTCCATGCTCCATGAAATCG
AATAAAGTTGCGACTTTTTCTTTGACGGCCATGCATGTCATGAAATCGAGGATGATGTCGTGAATTAAGAGCGAATCCCA
CATGTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTAGATTAACTCCAT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AGTATATTGTTGACTCATGAAGTTGAACTGTCTACAAAAAAGTTAGAGT
TTCTGCCTCTCGCCGCCGCCGCCGCAGGTCCGCCTCCTCTCCGGTGGCCCTAGGGCCATGGGACGCGGTGGATCTCGGCA
AGGGTCGGCGGGAGGGCTCCGTTTTTAGTCGTTTCTTTCAGTTTTGCTAGGGTTTGTGTCCTGCTGAGGAAGACGAGACG
GCGGCGGCTACCTGAAGATGGAATAAAGGTCTCCCCGCCTAGTCCCCGTTCCGGCGGCGCGTCTAGCACCGTTGGTGGGC
GTGTGGAGGTGTGTCTCCGGCGGATCTATCTTTGGTAGATTTGCTCGGATCTCGTTGTTGTTCGTCTATGTTCGCGTGTC
TTCGGATTGGATCTTTCTAATCTACGTTATTCTTCATCTGCGGCGGTTGCTGTTCTGGTGCGCTGGTCCTACGGGGCCTT
AGCACGACGACCCCCCGACTGTCTACTACAACAAGTTGTGCCCGACTCCGGCGATGGAGGGGCGATGACGGCGGCGCCTT
CGGCTCGCTTCAGTGCTGGTAGTCGTCGCTAGGTGGTTTATGGATCTGGATGTAATTTTTATTATTTCTGATATTCGTTG
TACTGCCATGATTGAAGATGAATAGATCGGAAATTTTCTCGAAAAAAAAGAAGTTGATAATGATGGTTTGCAGCAGAAAA
AATGTCGATGGAAAATTGAACTCAAATTCCCGCCACGGCAAAACTCCAATGCGCGCGCGTGGGCCGAAACCCGTCTGCTC
CCC--GCCCGCCTTCTTTCCGCCACGTCAGCGATCCGTGCCAAGGCGCATCTGGGTCGTCCATCGCACATCGCGACGGAC
GGCCGATATCATATCGATCCGTGGCACCCATCCATCAACCAATCAGAGCCCGCCTCCCTCCTCGTATAAAAGCTGCTCCG
ACTACGGGAACCACAAGGAAAACGGAACACGAGCGGGAAACTCGCCGCGCCCTCGCCGGTTATCCACCACAATTCCTCCC
ACGTTCCAGCGAAGCCTCGCACAC---CACACCAGAGCACCTTCCCCCGTCGCCGCCGCCGCAGCAGCAGCAGTATCCAT
GGCGCCGAAGGCTGCCGAGAAGAAGCCGGTGGAGAAGACCCCCGCGGTCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGA
CGTCCAAGGAGGGCG---GCGAG---AAGAAGGGGAAGAAGAAGTCCAAGAAGAGCATGGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCACGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTGGCGCGGTACAACAAGAAGCCCACCATCACATCCCGGGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCAGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTC
ACCTCCGCCTGATTTGGCACGTCGTC----TGTGTCTTCTTTGGCAGATCAGATCGATGGC-------GCTCGCTCT---
GTAGTTAGCTGTTCGTGCTATGTCGTCTTGTAACTTGTGCTGG-----------------------TTCATGATCTGGAG
AAATAGTAACAGCGCTTATTTCGGTTCTTTCTATGATCCTGTTTGTGCTACTTTCTCTCGGTTGTATTGGTTGTGCAAGC
GCGCGTTCTCTATAAATCGCTGCAGACGGCGGAGATATGAACTTGCCGAGATGTTTCTGACAAGCACCAGGTTTCAGTTA
GCTGACGGAAGTGTTGATATCTTCAGACATAAACACAGCGAGTTCTTGCTTTGATCCCGTTTGTGCTACTTT-GTCTTGG
TTCGATCTACTTATTATTGAAGCTCGC-GTTTCTCTGTAAATCTCTGCAGACAACGACTCCGAACCGGCAGAGATGTTTC
TCTGTT--------------------------------------------------------------------------
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>chr3A_693
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-----------AAAATTGAACTCAAATTCCCGCCAGGGAGAAACTCCAACACGCGCGCGTGGGCCGAAACCCGTTCGCTC
CCC--GCCCACCTTCTTTCCGCCACGTCAGCGATCCGCGCCAAAACGCATCTGGGTCGTCCACCCCGCCCCGCGACGGAC
GGCAGATATCCTATCGATCCGCGGCACCCACCCCTCCACCAATCAGAGGCCGCCTCCC-CCTCCTATAAA----------
----------------------------------------TCCACCGCGCCCCCGCCCTCAATCGTCCACCATTCCTCCC
ACCTTCAAGCGCATCCACACACACACACACCACAGACCACCTCTCCCCGCCCAAGCATCCCCATCCGCATCCTCATCCAT
GGCCCCCAAGGCAGCCGAGAAGAAGCCGGTGGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCG---GCGGGGACAAGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTGGCCGGCGAGTCGGCCAAGCTGGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGCGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTC
ACCTCCGCCTGATTCGGTCCTGTCCCTGTGTGTGTCTTC-CTGGTG-----GATGGATCGA-------TGTCGCCCT---
GTAGTTTCCTGCTCGGACTTTGTCCTCTTGTAACTTGTGCTGGCTGTGTCTTGTGTGGGATCATATTTCATGATCTGGAG
AAATAGTAGCGGTGCTTATTTCAGTTC-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGCCATGATCCTGTTCGTGCTACTTT-GTCTTGG
TTCGATCTGTGGTGC----AAGCTCGC-TTTTCTCTGTAAATCTCTGTGGACGACGACTGTGAACTTGCAGAGATGTTTC
CCTGTCTCAATTCTGAATTTCAGTTTTCAGCGAATGGTTTAGTGCTCTGTTTCAGTTTGGTAAGCTCGCTTCATGAGATG
TTTCCCTGTGATCATATTCTGAATTTCAG------TTCTTGCCA------------------------------------
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---------------------------------TGAACTTTACTCGATTAGTCTCTGATGGTGCCTGAGATGAAGTTAAT
GGTTTTAGTGCTTTGCCTTGGTCTGGAGTCAACATC-TGGTGTCAAATTGTGCTGATGTTCCATGCGGAATTTGTGCGCG
TTGGAAGGTCATATAATAAGCGTGCGGGAGCAAAATGAATTTGGGACAACACCGGGTTTCCCCATCTGAATATATTC
>chr3D_697
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---------------TTGAACTCAAA-TCCCGCCACGGAGAAAGTCATGCGCGCGCGCGGGGGCCGAAACCCGTCCGCTC
CCC--GCCCACCTACTTCCCGCCACGTCAGCGATCCGTGCCGGGGCGCATCTGGGTCCTCCATCGCGCACCGCGACGAAC
GGCAGATATCCTATCGATCCGCGGCACCCACCCCTCCACCAATCAGAGCCGGCCTCCC-CCTCCTATAAA----------
----------------------------------------TCCACCGCGCCCCCGCCCTCAATCCTCCACCATTCCTCCC
ACCTTCAAGCTCATCCACACAAGCACCTCTCGG-------CTCTCCCGGT------CGAAGCATCCGCATCCTCATCCAT
GGCCCCCAAGGCAGCCGAGAAGAAGCCGGTGGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCG---GCGGCGACAAGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTGGCCGGCGAGTCCGCCAAGCTGGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGCGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTC
ACCTCCGCCTGATCTGGCCGTC--TCC--GTTTGTCTTCTTTGATG-----GATGTATCGG-------TGTTGCTCTGTA
GTAGTTAGCTGTTCGTGCTCTGTCGTGTTGTAGCTTGTGCTGG-------TTGTTTTGGATCACATTTCATGATCCGGAG
AAATAGTAA---------TTTCAGTTC-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGATATGATCC-------GCTACTTT-GTCTTGG
TTCGATCTGTGGTGC----GAGCTCGCCTTTTCTATGTAAATCTCTGCGG-CAACGAATCTGAACTTGCAGATATGTTCC
TCTGTTTCAATTCTTAATTTCAG-TTTCAGCTAACTGTTTAGCGCCCTGTTTCAGTTAACTGATGGAGTGCCGATATCTT
CAGACAAA----------CTCGGTTTCAGTTTCAGCTCCCGACCTTTCGTCATGCTCGCTGAATGGCCATGATCCCCCAA
AACGTACAGTTGCTCATGCAGATGTTGCTGTTACCATCGA------CACAATTTGTTTGTCCGTTTTTCTCTCGTGATGT
TTATCTGTTGTATCATTGCTTGAACATAAGATGAAAATAGTTGGGTTCAGTCAGCGCAGCACGTTACGGTAGGATCGTGA
GGTTAATGGATCAGGCAAGCTTGTTCTAGCCGAGGAGAGGATGTTTATTTAGAGAAGATGCACATAAACTTTTCTTGTGC
TGAAATGCATATTTTTTACCATGTGTATTTTCTTTCGCCACTTTCTGTAATAATGTAATGACA---TTGTTCTTGGGA--
--------TGCAAATCGTACGAATTAGTTTTACTGAACAGCCGCGAA-----CGTTTCGTCTCGTCATCAGAAGTGTAAA
GAAATAGAACGGGCGGCCAGCATTGGTGCAAGCTGAACTTTTCTCGATTATTCTCTGATGGTGCCTGAGACGAAGCTAAT
GGTTTTATTGCCTTGCTTTGGTCTGGTGTCAACATCTTGGTGTCAAATTGTGCTGATGTTCCATGCGAAATTAATGCGCG
TTGGAAGGTCATATAATAAACGTGCGGGAGCAAAATGAATTTGGGACAACACCGGATTTCCGCACCTGAATATATTC
>chr3B_987
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----------------------------------------------------------------CCGCATCCGCATCCAT
GGCCCCGAAGGCAGCCGAGAAGAAGCCGGTGGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGG
CGTCCAAGGAGGGCG---G---GGACAAGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTGGAGACCTACAAGATCTACATC
TTCAAGGTGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGA
CATCTTCGAGAAGCTGGCCGGCGAGTCCGCCAAGCTGGCGCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCC
AGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTC
ACCTCCGCCTGATTC----CGCCGTCC--ACGTGTCTTCTTTGATG-----TATCCATCGATCGATGTTGTTGCTCTGTA
GTAGTTAGCTGCTCGTGCTCTGTCGTGTTGTAACTTGTGCTGG-------TTGTGTGGGATCACATTTCATGATCCGGAG
AAATAGTAACAGTGCTTATTTCAGTTC-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTGCCATGATCCTGTGTGGGCTACTTTGGTCTTGG
TTCGATTTGTTGTGC----GAGCTGGCTTTTTCTATGTAAATCTATGCGC-CAACGACCCTGAACTTGCAGACATGTCTC
TCTGTTTCCAATCTTAGTTTCAG-TTTCAGAT----------CGCCCTGTTTCAGTTAACTGATGAAGTGTCGATATCTT
CAGACAAA----------CTCAGTTTCAG------CTCCTGGCCTTTTGTCATGCTCCCTGAATGGCCATGATCCCTCAA
AA---------C--------------------------------------------------------------------
-----------------------------------------------------------------------GGATCGTCA
GGTTAATGGATCAGGCAAGCTTGTTCTAGCCGAGGAGTGGATGTTTACTTAGAGAAGATGCACATAAACTTTTCTTGTGC
TGAGATGCATATTTTGTACCATGTGTATTTTCTTTTGCCACTTTTAGTAATAATGTAATGGCA---TTGTTCTTGGGAGT
ACATGGTATGCAAATCGTACAGATTAGTCTGATGGAACAGCCGCGAT-----CGTGTCGTCTCGTCATCAGAAGTGTAAA
GAAAGAGAATGGGCGGCGAGCATTGGTGCAAGCTGAGCTTCACTCGATTATTCCCTGATGGTGCCTGAGACGAAGTTAAT
GGTTTTAGTGCCTTGCTTTGGTCTGGAGTCAACATC-TGGTGCCAAATTGTGCTGATGTTCCATGCGAAATTTATGCGTG
TTGGAAGGTCATATAATAAGCTTGCGGGAGCAAAATGAATTTGGGACAACACCGGGTTTCCCCACCTGAATATAT--
>SNPs
-------------S---------S------------------------------------------------S-S-----
-----------------------S-S----S----------------S--------S--S--------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S--S--S--------------
--SS------SS--------S-----------------------------------------------------------
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--------------S-----------------------S-------------------S---------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S----S--------
----S---------------------------------------------------------S-----------------
-----------------------------SS-----------------------S-------------------------
---------------SSS--------------------------------------------------------------
--------------------------------------------------------------------------------
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--S---------------S-------------------------------------------------------------
--------------------------------------S---------------------------S-------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------S-------------S----------------------------------------
---------------------S---------S-----------S------------------S-----------------
----------------------------------------------S-SSSS----------------------------
----------------------------------SSSSS-SSSSSS----------SS----S-------------S---
----S---------------S-----------------SS-----------------------------------SS---
----------------------------------------------------S---------------------------
---------------------------S--------S------S------------------------------------
------------S-----S--S-------------------------SSSSS----------------------------
-S------------------------------------------------------------------------------
----------------------------------------S-SS------------------------------------
-----------------------------------------------------------------------------
>forward_1605
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-----------------------------------------------------------------ATCACCGTTCCTCCC
ACCTC---------------------------------------------------------------------------
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>reverse_2761
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----------------------------------------CGTGTGCACAATTTGTCCGT--------------------
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