>input_sequence_81143
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--ATGGCAGGGTTCCTGATCAGAGTGTACAGCGGCTGGGGAGTCGAGCTCGCCGCCGTCTCCCTCGCGGCCTTCCTCCTC
CGGTACGCCGTGGTGCCCTACGTGAACCACCTGGTCGCCAGCCTGAGCGGCCTGAGCGGGATGGTCGCCAGTGAGGCGGT
CGTCGCGAGCTACTGCTACGCCTCGGGCCTCGACGGCGCCACCATCTCCCGGCTGCCATGCTTCGTGGCCGGGCGGCCGG
GCGACGCTGCTGCCGTGGCCACGATGGACTGTCCGGTGTGCCTGGGCGCTGTCGAGGAAGGGGAGACGATGCGGGCGCTC
CCGGTCTGCCGGCACGCATTCCATGCGCGGTGCGTCGACGCCTGGCTGCGCCTGCGGCCGACGTGCCCCGTTTGCCGAGC
GACGTTCAGCTGA-------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G131400
GGCCGGAATGTGTTGCCGCAGAAAAAAAAAAGACACACGTTCATTTGCGTCGCCGTGTTGGACCGTGTTTTCTGTTCGCG
TGGACTTAAATCGGACGCGGGCAGACGAATTGGGTTGCGGCAATTGCAGTTGGCCTAAGCAGGTACGAAATAGTCGGCCG
TGATCAATGTACAAGAGCGCTCAACTTGCTGAAGTTTGCAAATGCAGGTGCATTACTCTGTCGCTCAACTTGCTGAAGCT
TGCAAACATAGGTGCGTGCATTAACCCTGTCGGTTCTGCTAATCCGAAGAGGAGTTAGGAGCTAGTCTCTTTGCAATCTG
TGTACTGC-AAGATATTGTTTCGATAGCACATACCTCAAATCAAGGAGAAGACCACACTTTTTTTCTGAACG--------
-AAAAAAGAAAAAACCCATTCTCCACGATCGCAGACGCCGCCTGAAGTACCGGCACTTGTACTTTTCGAAGAAAATAAAG
---AACTCCTACCAAATATACTGTTGCTTTTTCCTTTTTTGGGGCAAAGCCAAACACTATTCCTGCACGTATTTGCTAGT
AATATTCCAGCGATCCAGTCTGTACATTAAACTCGGCCGTTGCCTGACAGCGGCGTGGCACCCGCCCGTTTCATCCAG--
---ATCCCCACCGCGCGCCAATTCGCCCACCGACCGCATCAT---------------TTCCGTTTGTCACCGAGAAGCTC
GGAACAGTCTGGAAACTCTGAATAGCCGCTCGGCGAGCCAAGTGGAACCGAACAGCAGCCGCACGCGCGACCAATCCGCG
CGCGATGATGGTGAATTGGTGATCCCGCAGCAATAACCAAGGGCGAATAGTCCGCAGTTGGTTAGCTCGGTGCTTCTTCA
TCACAGGCCTTTTCTCTCCCGAACCTTGCAGCAAACAGGCCAGCGCGCGCCTTTGTGCATGCACCCGTTGGCAGAGCGCC
AGTGCGTGCGTGGCGTGGCCCAAGCCTGCGGGGTGCGATCGTCGTGCCGG---------CCACCGCGCACGTCGCCGTCG
GCATGGCAGGGTTCCTGATCAGAGTGTACAGCGGCTGGGGAGTCGAGCTCGCCGCCGTCTCCCTCGCGGCCTTCCTCCTC
CGGTACGCCGTGGTGCCCTACGTGAACCACCTGGTCGCCAGCCTGAGCGGCCTGAGCGGGATGGTCGCCAGTGAGGCGGT
CGTCGCGAGCTACTGCTACGCCTCGGGCCTCGACGGCGCCACCATCTCCCGGCTGCCATGCTTCGTGGCCGGGCGGCCGG
GCGACGCTGCTGCCGTGGCCACGATGGACTGTCCGGTGTGCCTGGGCGCTGTCGAGGAAGGGGAGACGATGCGGGCGCTC
CCGGTCTGCCGGCACGCATTCCATGCGCGGTGCGTCGACGCCTGGCTGCGCCTGCGGCCGACGTGCCCCGTTTGCCGAGC
GACGTTCAGCTGACGTTGAGGCCAACGCGGCGGCCACGGGGTCGCGG------------CACAGTGGAGTGGGTGCTCGC
GTGCAATTTGAGCTCTGGCTGACGAAATGGGACGCGGATGTCCGTATCCTCCTGCATTCAGGCCGTGTGGACACTTTTTT
TTTACCCCGATAAATTCCGAAAGTTCGGATTTAAAGCATTTTATACGGAAAAAAAATTATGGCAACTTTAGTTGACGCGA
GGTGTCAACTTTAGTTGTTCAGACATGGTAATTTTATCCTAGTTCGTTTTTTGTCAGAAAATTGTTATGTTTACCAACCT
TACATGAACTAAAGTTGTCATGAAAAACATTCCGATTGCCATGCTTATAATCCAAATGTTTAAGATTTATCATTTTCTTT
TTCTTTTTGTTTGAGAAAGAGTGGCCACAGGGTTAATAAGTTCGTTCCACTGACGTGGGTGGGAAATTTGACGGCCAGAA
TTGCTGTGTTGTCTCACCCTTAAGGCAATCTTAAATTTTACTATTACTCTTGTTTTCTTTGGACTTACTTTTTTTTGGAA
CATTTCTTTGGACTTGCTTGTTACTACTCTATATATATCTCTATTCGTATTTGCAATTTATCAGTTGTCTGGAAATAAAA
TACGAATGAATCGAATCTGTATGAAAGATAGAGGGAGAGAGAGGGAGAGAGAGAGAGAAAGAGAGAGGCGTACTGATCCG
AGGCCGGCCCTGTCGTCTTCAGCAAGACCGGTCCAAGACCTCTCCTGGCCGTGGTGTCACTCATTTTCGCCGTCGCTTAG
ATTAAGGAGCCTTAAAGCTAAAAAAGAAGTACCCCCATAATGTGATTCTTCGTCTCCATGTCTTTTACCCAAACACCATT
ATCATCAAGCAAATTTTTTATCTGATTTCTTTTCTTTATGGATGTTGCCGCATTATGGAAAAAGAGGTGTTGCGGTCACC
ATACAATAGCCAGTTTGCTCGACCCTTGTAACCAGTATATCTCCTCTGTTCCAACAGATTTTCAA
>chr3B_131
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--------------------------------------------------TGCCCTAAGCAGGTACAAAATAGTCGGCCG
TGATCAATGTACAGGAGCGCCCAACTAGCTGAAGTTTGCAAATGCAGGTGCATTACTCTGTCGCTCAACTTGCTGAAGCT
TGCAAACATAGG----CGCATTAACTCCGTCGGTTCTGCTAATTCGAACAGGAGTCAGGAAC-AGTCTCTTTGCAATCTG
TGTACTGTAAAGATATTGTTTCGATTGGGCATACATCAAATCAAGGAGAAAAACACACGGGAAACGGGAAAATGCCTCAA
AAAGAAAAGAAAAACCCATTCTCCACGGTCCCAGACGCCGCTTGAAGTACCGGCACTTGTACTTT-CGATGAAAACAAAG
---GACTCCCACCAAATATACTGTTCCCTTTTCCTTTTTAGGGGCAAAGCCAAACACTATTCCTGCACGTATTTG---GT
AATATTCCAGCGATCCAGTCTGTACATTAAACTCGGCCGTTGCCTGACAGCGGCCTGGCACCCGCCCGTTTCATCCAGTC
CAGATCCCCACCGCGCACCGCCTCGCCCACCGACGGCATCATTGCCCAACACCTTCATTCCGTTTGTCACCGAGAAGCTC
ATAACAGTCTGGAGACTCTGAATCGCCGCTCGTCGAGCCAAGTGGAG-----CAGCAGCCGCACGCGCGACCAATCCGCG
CGCGATGATGGT--------GATCCCGCAGCAATAACCAAGGGCGAATAGTCTGCAGTTGGTTAGCTCGGTGCTTCTTCA
TCACAGGCCTTTTCTCTCCCAAACCTTGCAGCAAACAGGATAGCGCGCGCCTTCGTGCATGCACCCGTTGGCAGAGCGCC
AGTGCGTGCGTAGCGTGGCTCAAGGCTGCGAGGTGGGATCGTCGTGCCGG---------CCACCGCGCACGTCGCCGTCG
GCATGGCAGGGTTCCTGATCAGAGTGTACAGCGGCTGGGGAGTCGAGCTCGCCGCCGTCTCCCTCGCGGCCTTCCTCCTC
CGGTACGCCGTGGTGCCCTACGCGAACCACCTGGTCGCCAGCCTGAGCGGCCTGAGCGAGGTGGTCGCCAGTGACGCGGT
CGTCGCGAGCTACTGCTACGCCTCGGGCCTCGACGGCGCCACCATCTCCCGGCTGCCATGCTTCGTGGCCGGGCGGCCGG
GCGACGCTGCTGCCGTCGGCACGATGGACTGTCCGGTGTGCCTGGGCGCTGTCGAGGAAGGGGAGACGGTACGGGCGCTC
CCTGTCTGCCGGCACGCATTCCATGCGCGGTGCGTCGACGCCTGGCTGCGCCTGCGGCCGACGTGCCCCGTTTGCCGAGC
GACGTTCAGGTGACGTTGAGACCGACGCGGCGGCCACGGCCAACGGGGACGCGACGCGACACAGTGGAGCGGCTGCTCGT
TTGCAATTTGAGCTCTG---------------------------------------------------------------
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>chr3D_131
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--------------------------------------------------TGCCCTAAGGAGGTACAGAATAGTCGGCCG
T-ATCAATGTACAAGAGCGCTCAACTTGCTGAAGTTTGCAAATACAGGTGCATTACTCTGTCGCTCAACTTGCTGAAGCT
TGCAAACATAGG----TGCATTAACTCCGTCGGTTCTGCTAATTCGGACAGGAGTCAGGAAC-AGTCTCTTTGCAATCTG
TGTACTGTAAAGATATTGTTTCGATTGCGCATACCTCAAATCAAGGAGAAGAACACACGCGAAACGGGAAAAATGCCTCA
C----AAAGAAAAATCCATTCTCCACGGTCCCAGACGCCGATGGAAGTACCGGCACTTGTACTTT-CGATGAAAATAAAG
AACAACTCCCACCAAATATACTGTTCCCTTTTCCTTTTTTGGGGCAAAGCCAAACACTATTCCTGCACGTATTGGA---T
AATATTCCAGCGATCCAGTCTGTACATTAAACTCGGCCGTTGCCTGACAGCGGCGTGGCACCCGCCCGTTTCATCCAGTC
CAGATCCCCACCGCGCGCCGCCTCGCCCACCGACGGCATCATTGCCCAACACCTTCATTCCGTTTGTCACCGAGAAGCTC
AGAACAGTCTGGAAACTCTGAATCGCCGCTCGGCGGGCCAAGTGGAGCCGAACAGCAGCCGCACGCGCGACCAATCCGCG
CGCGATGATGGTCACCT--------CGCAGACATAACCAAGGGCGAATAGTCTGCAGTTGGTTAGCTCGGTGCTTCTTCA
TCACAAGCCTTTTCTCTCCCAGACCTTGCAGCAAACAGGATAGCGCGCGCCTTTG----TGCACCCGTTGGTAGAGCGCC
AGTGCGCG--------GCCCCGAGGTAGCAAGGTGAGATCGTCGTGTCGGCGATGGCGACCACCGCGCACGTCGCCGTCG
ACATGGCGGGGTTCCTGGTCAGAGTGTACAGCGGCTGGGGAGTCGAGCTCGCCGCCGTCTCCCTCGCGGCCTTCCTCCTC
CGCTACGCCGTGGTGCCCTACGCGAACCACCTGGTCGCCAGCCTGAGCGGCCTGAGCGAGGTGGTCGCCAGTGACGCGGT
AGTCGCCAGCTACTGCTACGCGTCGGGCCTCGACGGCGCCACCATCTCCCGGCTGCCATCCTTCGTGGCCGGGCGGCCGG
GCGACGCTGCTGCCGTCGGCACGACGGACTGTCCGGTGTGCCTGGGCGCTGTCGAGGAAGGGGAGACGGTGCGGGCGCTC
CCTGTCTGCCGGCACGCATTCCATGCGCGGTGCGTCGACGCCTGGCTGCGCCTTCGGCCGACGTGCCCCGTCTGCCGAGC
CACGTTCAGGTGACGTTGAGA-CGACGCGGCGGCCACGGGGACGCGCGT----ACGCGACACAGTGGAGTGGGTGCTCGT
TTGCAATTTGAGCTC-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S-------------
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------------SSSS---------S-S---------------S----S------S----S-S-----------------
-------S-----------------S--S-----------------------S-----SSSSSSSSS---SS--------
---S---SS------------------S--S----------S-----------------------S---S----------
---------S---------------S-S-----------------------------------------------SSS--
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-------------------SSS------------S---------------------------------------------
S----------------------S----------------------S---------------------------------
------------S-SS-SSS--------------------------------S---------------------------
--------------------S------------------SS---------------------------------------
-----------S------------S-----S----S--------------------------------------------
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----------------------S-----------------------------------S-S-------------S-----
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----------------S-S-------------------------------------------------S-----------
--S-----------------------------------------------------------------------------
---------S----------S--S-----------------S-------------------------------------S
S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_72
----------------------------------------------------CCGTGTTGGACCGTGTTTTC--------
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>reverse_1900
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-----------------------------------------------------------TGGGAAATTTGACGGCCAGA-
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