>input_sequence_81130
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--------------ATGGATTTTCTTGAACCAACATTAGCCTTAGATGAGACACATTATCAAGAGGGTTATACAAATGGG
TATGATGATGGCCTGGTATCTGGAAAGGAAGAGGGGAGGCAGGTTGGCTTAAAGAATGGTTTCCAGGCAGGCGAAGAACT
GGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAGTAATTCGCCTTGATCAAGATGCATTCTCAGCTCGGGTGAGGA
AATACATGGAGCAACTAGCTGCACTTGTGAGCAACTATCCTTTGTCTGATCCAGAGGATGAGCAACTTCAAAGCATGATG
AGGGAGATAAGACTGAAATTCAGCATTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGCCCCATGTCATC
TGAGCAAGACATCGAGGATATGTAG-------------------------------------------------------
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-----------------
>chr2B_1_TraesCS2B01G244200
CTGCGGCCCGTCGGCAGTCGCTCCCCTACTTCCTCCCCCTTTTGGATTTGGTGTACGCACTGCTGTACCGATGAAATTAA
TCATAGAAGTTTTGTTTAAGTTTGGATTGTAGGGATTCGGGTGTTCATTGAACTGTAACACGGTTTAG-----------A
AATCAATTTGGAGGAAATCCTTCCTTCTGATGATA--AGATTGGGGACCTAGGTTTTGGCGTGT--TACTATTTTGATGG
ACAGAGTAACCAGATTTTGATTATGTGTATCCCCTCTTTTGTCAAACACGGGA--------TACATGATTGTGACTAACT
GACTATGACTCTGAGATAGGAATGTTGCGTCCTGATAATCATGATGATAATCATGATGCTGATGAAATAGGAACTTTTAG
ACAACTTATTTTGTTTTGAGGCCATATAAATCGATAGGTTAATCTAATAAGAGGGATCTCTGATGAACGAATTATGATAT
GAAGTGGCTGTAGAATGTAGTCCTTGCTGTTTTTATTTGTGGCCCATAGCCATTAGTACC--GTATAACCTGCAGAATAT
AGAGCCTTAGTTATTA---GAACAAAATAAAATG------TATCTCTTTGTGTTGAAATCGTATTAG-------------
-----------------------------------------------ACAGAGCAAGGATAAATTCCCTACTCATTTGTT
AAAAAATAACTAAAATTGTTCACGCACACACAAAAAAAAACGTGCTTATCCCTGTCAGGGCAAAGGAAGAATGGGGATGG
AATTTAGGACTACTTTCACTTTTCATGTGTAATGTTTCAAAGTTCTTTG--ATTTTTGAGCTTTTAATCAATC-------
----------ATTCAATCTGCAACAAC-ATTTAGGTTATA-TTTTAGCAAAAGTTTGA-----TTTCCCTTGATCTATAA
TGTTCCTTGCAATCATGAGTTTCTTCTCTTTGCCTTGAACATGTACTCATATA----------GCTACTTACTGCTGCAA
CCTTTATTTTGTTGATG---TAGCAGATTTCTTGGAATTACATCTTTCTGCAAACTGAATA-TTGTTTGACGATATTAGA
CTTTGATTCATACCATGGATTTTCTTGAACCAACATTAGCCTTAGATGAGACACATTATCAAGAGGGTTATACAAATGGG
TATGATGATGGCCTGGTATCTGGAAAGGAAGAGGGGAGGCAGGTTGGCTTAAAGAATGGTTTCCAGGCAGGCGAAGAACT
GGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAGTAATTCGCCTTGATCAAGATGCATTCTCAGCTCGGGTGAGGA
AATACATGGAGCAACTAGCTGCACTTGTGAGCAACTATCCTTTGTCTGATCCAGAGGATGAGCAACTTCAAAGCATGATG
AGGGAGATAAGACTGAAATTCAGCATTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGCCCCATGTCATC
TGAGCAAGACATCGAGGATATGTAGCTTGTTCAGAATTATTCAAAAGTCCCTTGTAGATTAT-AAATCTCAGTCACCACT
TTGAAACTGATATTTGGTGCCGACATTGTTTTCTTTTGATTTTGTACTTATCATGTTCAGTTGCATGTATT-GTGCTGCC
ACTGGTATAACAGAGGATATCTGGAGCACTGTATCTAGATGTATCTACCGTCCACTGCAAGTCTTCAAAGTTGAGAGAAT
TTTGCAGTCGTGTTGTTTATTATATGTGGTCTTCTCCTTTCAAGATGAGATGATTTTCTTCACTGTATCTAGATGATTTC
GGGAGTACTCCCTCTGTTCCGAATTACTTGTCGTAGGTATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATT
TTTGCGACGAGTAATTTGGAACGGAGGGAGTACATGTTTTATGCCGGTCGCATATATTCCCACTCGCAGTTTCCCCTCGG
GATGTATATTTTCCACTCTAAGC---------------------------TGATTTGACAAACGACTGATTAGTGCTTAT
TA---TTCACACATCATGTCAGCATATTGTCCAACCCTCTTTGTAGGGACCCTATTCTCCAAGCTGATTTCCTGTCTCGT
A-------------------------------------------------------------------------------
------C--TATAAGGCATCTTCTAAGA--GTAAAGATATAGGGCTGTTTATAACATGACTCGCCTGCACTTCGTTTTCT
TTTGCCGTTATTCAAACTTGAGTGGTACAGTATTATTCAGCAAAACCAGCGGCCGCTTAACCCCAGGCGGCTGCCTTTTC
TTTGATCGAGCACACGATAGTGCATAATTGCTGGATTGAGATCA-AACTCAGTACGTGATGAAGAGTTGCTAACATGAGA
GCC-AATTGTTATGTTGTTACAGCAGAGAATCTCAACCCGTACACCATTAGGGGCAAAAGGTATTCACTAA---------
-------------------------------------------------------------------------------A
TTTCACGTTTTACGGTAGAGAAAGTGCATTACAGAA--------------------------------------------
-----------------GGTAGAAATACATACACAGGGTAGGTATACGTGCTCAGTTATTGGTACAGGCTATTTGCACGT
GGTGTATTAGCCAGCCC
>chr2D_18
TCGCTC----------------CCCCTACTTCCTCCCCCTTTTGGATTAGGCGTACGCACTGCTGTACCGATGAAATTGA
CCATGGAAGCTCTGTTCAAGTTTGGACTGTAGGGATTTGTGTGTTCATTGAACTGTAAGACGGTTTATAGAAAGAAAGAA
AATCAATTTGGAGGAAATCCTTCCTTCTGATGATATAAGATTGGGGACCTAGGTTTTGGCGTCTTATACTATTTTGATCG
ATATAGTAACCAGATTTTGATTATGGGCATCCCCACTTTTGCCAAACATGGGA--------TACATGATTGTT----ACT
AACTAAGACTCTGAGGTAGGAGTGCTGCGTCC------------CAATAATCATGATGCTGATGAAATAGGAACTTTTGG
AAAACGCATTTTGTTTTGAGGCCATATAAATCGATAGGTTAATCTAACAAGAGGGATCTCTGATGAACGAATTATGATAT
GGAGTGACTGTAGAATTTAGTCTTTGCTGTTTTTATTTGTGGCCCATAGCCATTAGTATC--GTATAACCTGCAGGATAT
AGAGCCTTAGTTATTATCAGAACCAAATAAAATG------CATCTCTTTGTGTCAAAGTCGTATTAG-------------
-----------------------------------------------ACAGAGGAAGGATAACTCCCCTAATC---CCTG
TCTGTGCC------------------------------------------------------AAGGAAGAATGGAGATGG
AATTTAGGACTACTTTCACTTTTCGTGTGTAATGTTTTGAAGTACTTTG--ATTTT-GAG-CTTTAATCAATC-------
----------ATTCAATCTGCAACAACAATTTAGGTTATA-TTTTAGCAAAAGTTTGA-----TTTCCCTTGATCTATAA
TGTTCCTTGCAATCATGAGTTTCTTCTCTTTACCTTGAACATGTACTCATATAGCTACTTATAGCTACTTACTGCTGCAA
CCTTTATTTTGTTGATG---TAGCAGGTTTCTTGGAATTACATCTTTCTGCAAACTGAATA-TTGTTCGACGATATTAGA
CTTTGATTCGTACCATGGATTTTCTTGAACCAACATTAGCCTTAGATGAGACACATTATCAAGAGGGTTATACAAATGGG
TATGATGATGGCCTGGTATCTGGAAAGGAAGAGGCAAGGCAGGTTGGCTTAAAGAATGGTTTCCAGGCTGGCGAAGAACT
GGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAGTAATTCGCCTTGATCAAGATGCATTCTCAGCTCGGGTGAGGA
AATACATGGAGCAACTAGCTGCACTTGTGAGCAACTATCCTTTGTCTGATCCAGAGGATGAGCAGCTTCAAGGCATGATG
AGGGAGATAAGACTGAAATTCAGCGTTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGCCCCACATCATC
TGAGCAAGACATCGAGGATATGTAGCTTGTTTGGAATTATCGAAAGGTCCCTTGTGGATTATGAAATCTCAGTCACCACT
TTGAAACCGATATTTGGTGTCAATAGAGTTTCCTTTTGATTTTGTACTTATGATGTTCAGTTTCACGTATT-ATGCTGCC
ACTGGGATAACGGAGGATATTTGGAGCACTGTATCTAGATGTATGTAACAGAGGAT-----------------------T
TTTGCAGTCATGTTGTTTATTATATGTGGTCTTCTCCTTTCAAGATGAGATGATTTTCTTCACTGTATCTAGATGATTTC
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-------------------------GGGAGTACATGTTTTATGCCGGTCGCATATATTTCCACTGGCAGTTTCCCCTCGG
TTTGTATAATTTCCACTCTAAGCAGTGAGTAATTTAGGTGC--TATATGCTGACTTGACAAATGACTGATTAGTGCTTAT
TA---TTCACACATTATGTCAGCATATTGTCCAACCCTCTTCGTAGGGACCCTATTCTCCAAGCTGATTTCATGCCTTGT
A-------------------------------------------------------------------------------
------CTGTATAAGGCATCTTCTAAGAATATAAAGATATGGGGCTATTTATAACATGACTCACCGGCACTTCGTTTTCT
TTTGCCGTCATTCAAGCTTG--------AGTATTATTCAGCAAAACCAGCGGC------------------TGCCTTTTC
TTTGATAGAGCA--CGATAGTGCATAATTGCTGGATTGAGATCA-AACTCACTACATGATGAAGAGTTGCTAACATGAGA
GCC-AATTGTTATGTTGTTACAGCAGATAATCTCATGTAC-ACACCATTAGGGGCAAACGGTATTCACAAA---------
-------------------------------------------------------------------------------A
AATTC-------------------------ACAGAA--------------------------------------------
-----------------GGTAGAAATACATACACAGTGTAAGCATACATGCTCAGTTATTGGTACAGGCTATTTGCACGT
GGTGTATTAGCCAGCCC
>chr2A_67
------------------------------------------------------------------ACCGATGAAATTAA
CCATAGAAGTTCTGTTTAAGTTTGGACTGTAGGGATTCGTGTGTTCGTTGAACTGTAAGACGGTTTAG-----------A
AGTCAATTTGGAGGAAACCCTTCCTTCTGATGATA--AGATTGGGGACCTAGGTTTTGG---------------------
--------------------------GCATCCCCACTTTTGTCAAACACATGGTACATCTGTACATGATTGTGACTAACT
GACTACGACTCTTAGATGGGGGCGGTGCGTCC------------TGATAATCATGATGCTGATGAAAAAGGAACTTTTAG
ACAACACATTTTGTTTTGAGGCCATATAAATCGATAGGTTAATCTAACAAGAGGGATCTCTGACGAACGAATTTAGATAT
GGGGTGGCTGTAGAATGTAGTACTTGCTGTTTTTATTTGTGGCCCATAGCCATTAGTGCCGTATATAACCTGCAGGATAT
AGATCCTTAGTTATTGTTAGAACAATATAAAATGTACTCGTACCTCTTTGTGTCAAAGGCGTAATAG-------------
-----------------------------------------------ACAGAGGGAGGATAAATTCCCTACTTATCCATG
TCG------------------------------------------------------GGGCAAAGGAAGAAAGGGGATGG
AATGTAGGACTACTTTCACTTTTCATGTGTAATGTTTCGAAGTTCTTTG--ATTTTTGAG-TTTTAATCAATCGTTTGTA
TTGTCTTA--ATTCAATCTGCAACAAC-ATTTAGGTTATATTTTTAGCAAAAGTTTGA-----TTTCCCTTGATCTATAA
CGTTGCTTTCAATCATGAGTTTTTTCATATT----------------------------------TACTTACTGCTGCAA
CCTTTATTTTGTTGATG---GGGCAGATTTCTTGGAATTACATATTTTTGCAAACTGAATA-TTGTTCGACGATATTAGA
CTTTGGTTCATATCATGGATTTTCTTGAACCAACATTAACCTTAGATGAGACACATTATCAAGAGGGTTATGCAAATGGG
TATGAAGATGGCCTGGTATCTGGAAAGGATGAGGGGAGGCAGGTTGGCTTAAAGAATGGTTTCCAGGCAGGCGAAGAACT
GGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAGTAATTCGCCTTGATCAAGATGCATTCTCAGCTCGGGTGAGGA
AATACATGGAGCAACTAGCTGCACTTGTGAGCAACTATCCTTTGTCTGATCCAGAGGATGAGCAGCTTCAAAGCATGATG
AGGGAGATAAGACTGAAATTCAGCGTTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGCCCCACATCATC
TGAGCAAGACATCGAGGATATGTAGCTTGTTTAGAATTATCAAAAGGTCCCTTGTGGATTATCAAATCTCAGTCACCACT
TTGAAACTGATATTTGGTGTCAATAGAGTTTCCTTTTGATTTTGTACTTATGATGTTCGGTTTCACGTATTTATGCTGCC
ACTGGGATAACGGAGGATATCTGGAGCACTGTTTCTAGATGTATCTAGCAGAGAAT-----------------------T
TTTGCAGTCATGTTGTTTATTATATGTGGTCTTCTCCTTTCAAGATGAGATGATTTTCTTCACTGTATCTAGATGATTTC
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-------------------------GGGGGTACATGTTTTATGCGGGTCGCATATATTTCCACTC--AGTTTTCCCTCGG
TTTGTATATTTTCCACTCTATGCAGTGAGTACTTTAGGTGCTATATATGCTGACTTGACAAATGACTGATTAGTACTACT
TACTGTTCACACATTATGTCAGCATATTGTCCAACCCTCTTTGTAGGGATCCTATTCTCCAAGCTGGTTCCATGTCTTGT
ACTCCCTTTGTAAACTAATATAAGAGCGTTTAGATAATTATAAAGTAGTGATCTAAACGCTCTTATATTAGTTTACGGAG
GGAGTGCTGTATAAAGCATCTTCTAAGA--ATAAAGATATGGGACTATTTATAACATGACTCACCAGCACTTCGTTTTCT
TTTGCTGTCATTCAAACTTGG--------GTATTATTCAGCAAAACCAGCGGC------------------TGCCTTTTC
TTTGATAGAGCA--CGGTAGTGCATAATTGCTGGATTGAGATCATAACTCAGTACATGATGAAGAGTTGCTAACATCAGA
GCCAAATTGTTATGTTGTTACAGCAGAGAATCTCAACCCGTACACTATTAGGGACAAACGGTATTCACTAAGGGCATGTT
CAGAGTCTCATCACTCCAGAACTCCACTCCCGGAACGGGGAAACACCCGCTCAGCAGATTCTCGTATCGGCGGACTAAAA
TTTCGCATTTTACGGTAGAGAAAGTGCATTACAGAAGGTAGAAATACATAACCATGCAAAAAAAAGGGTAGAAATACATA
ACCATGCACAAAAAAAGGGTAGAAATACATACACAGGGTAGGTATACATGCTCAGTTATTGGTACAGGCTATTTGCACGT
GGTGTATTGGCCAGCCC
>chr3D_487
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-----------------------------TTTTTATTTGTGGCAGAATATAG--AGTACC--ATATGCCCTGCAGAATAT
AGAGCCTTAGTTATTA---GAACACAATTTAA--------TATCTCTTTGTGTCGAAGTCATACTATTTCATAATGCTTT
ATTGAAAATACTATTTCATAATGTGTGGTTGACTAGCAAGGGGTTGAAGAGAGCAAAGATAACATCCCTACTTTTGCCTG
CCGGGGCA------------------------------------------------------AAGGAAGAATGGGGGTGG
AATTTAGGACCACTTTCACTTTTCATATATAATGTTTTCAAAGATCTTACAAATTC-TAG-TTTTAATCATTTAGGT---
---------TATTCGATGTGCAACACC-ATTTAGGTTATTTGAGCTAAAAGCTTAATTTGTTGTTTCCTTTGAGCTATA-
CGTTCCTTTCAGTCAGGAGCTTGTTTTATTTTCATTGAACATGTA-TCATATAGTTACTT--------------------
TCTTTATTTTGTTGATGATGGAGCAGATTTCTTTGAATTACGTACTTCTGCAAACTGAATAATTGCTGGACGTTATTAGA
CCTTGGT---TACCATGGATTTTCTTGAACCAATGATAGCCTTAGACGAGACGCATTATCAAGACGGTTACAAAGATGGT
TATGATGATGGCATGGTATCTGGAAAAGAAGAAGGAAGGCAGGTCGGTTTAAAGTTGGGTTTCCAGGTAGGTGAAGAGCT
AGGTTTCTATCAGGGCTGCTTGGATGTGTGGATGTCAATAATTCGCCTTGATCAAGGTGCATTCTCAGCTCGGGTCAGGA
AATACATGGAGCAACTAGCTGCACTTCTAAGCAACTATCCTTTGTCTGATCCAGAGAATAATCACCTTCAGGACATGATG
AAGGAGATAAGGCTGAAATTCAGGGTTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGTCCCACATCATC
AGAGCAAGACCTTGAGGATATTTAGCTTGTTTAGCATTATTCATAGGGTTCTTATGGATTATCAAATCTCAG-CACCACT
TTGAAACTGATATTTGGTGTCTATATTGTTTGCTTTTGATTTTGGACTTATGATGTTCAGTTTCACGTAT----------
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>chr3A_677
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----------------------------------------------------------------------------CCTG
CCGGGGCA------------------------------------------------------AAGGAAGAATGGTGGTGG
AATTTAGGACCACTTTCACTTTTCATATGTAATGTTCTCAATGATA-TATAAATTC-TAG-TTTTAATCAATCATTTGTA
TTTTCTTCATATTCGATGGGCAACACC-ATTTACGTTATTTTAGGAGAAAGCTTAATTTATTGTTTCCTTTGAGCTATA-
CTTTCCTTTCCGTCATTAGCTTGTTTTATTTTCATTGAATTTGTA-TCATATAGTTACTT--------------------
CCTTTATTTTGTTGATG---GAGCAGATTTCTTGGAATTACTTACTCCTGCAAACTGAATAATTGCTGGACGTTATTAGA
TCTTGGT---TACCATGGATTTTCTTGAACCAATGATAGCCTTAAACGAGACACATTATCAAGACGGTTATAGAGATGGT
TATGATGATGGCTTGGTATCCGGAAAGGAAGAAGGAAGGCAGGTCGGGTTAAAGATGGGTTTCCAAGTAGGTGAAGAGCT
AGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAATAATTCGCCTTGATCAAGATGCATTCTCAGCTCGGGTCAGGA
AATACATGGAGCAACTAGCTACACTTCTAAGCAACTATCCTTTGTCTGATCCAGAGAATAATCACCTTCAAGACATGATG
AAGGAGATAAGGCTGAAATTCAGGGTTATCACGGGAAGCTTAGGAGCAAAATTGGGGTATGAAGGTCGTCCCACATCATC
AGAGCAAGACCTTGAGGATATTTAGCTTGTTTAGCATTATTGATAGGGTTCTTATGGATTATTTAATCTCAG-CACCACT
TTGAAACTGATATTTGGTGTCTATATTGTTTGCTTTTGATTTTGGACTTATGATGTTCAGTTTCACGTATGTTGCT----
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>chr3B_684
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--GGGCAA------------------------------------------------------AAGGAAGAATGGGGCTGG
AATTTAGGACCACTTTCACTTTTCATATGTCATGCTTTCAAAGATCTTACAAACTC-TAG-ATTTAATCAATCATTTGTA
TTTTTTTCATATTCGATGTGCAACACC-ATTTAGGTTATTTGAGCTAAAAGCTTAATTTGTTGTTTCCTTTGAGCTATA-
CGTTCCATTCGGTCAGGAGCTTGTTTTATTTTCATTGAACATGTA-TCATATAGTTACTT--------------------
CCTTTATTTTGTTGATGATGGAGCAGATTTCTTTGAACTACGTACTTCTGCAAACTGAATAATCGCTGGACGTTATTAGA
CCTTGGT---TACCATGGATTTTCTTGAACCAATGGTAGCCTTAGACGAGACACATTATCAAGACGGTTACAAAGATGGT
TATGATGATGGCAAGGTATCTGGAAAGGAAGAAGGAAGGCAGGTCGGTTTAAAGATGGGTTTCCAGGTAGGTGAAGAGCT
GGGATTCTATCAGGGCTGCTTGGATGTGTGGATGTCAATAATTCGCCTTGATCAAGGTGCATTCTCAGCTCGGGTCAGGA
AATACATGGAGC--------------------------------------------------------------------
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-----------------
>SNPs
SS--SSSSSSSSSSSSSSSSSS--------------------------S--S----------------------------
S----------S--------------S------------S------------------S---------------------
--------------------------------------------------------------S---------------S-
-S-S---------------------S-S------S---------------------------------------------
-----S---------------S--S-------SSSSSSSSSSSS------------------------------------
-----SS----------------------------------------S--------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------------------S---S----------------------
---------------------------------------------------------------------------SSS-S
SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
--------------------------------------S---------------------S-------------------
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-------------------------------S------------------------------------------------
-------------------------------------------------------------------S------------
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----------------------------------------------------------------S---------------
------------------------S------------------------------------------------SS-----
-------------------------------S-------------S---------S------------------------
-------------------S-S-S-------S-------------------S----------S--S------S-------
-----S-----S-----------------------------------S-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSS-
---------S----------------------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------S---------------------
SS---------------------------------------------------S--------S-----------------
--------------S--------------------------------------------------------S-----S--
--------------------------------------------------------------------------------
------------------------------S---------S-----S---------------S--S--------------
--------S-----------SSSSSSSS-------------------------SSSSSSSSSSSSSSSSSS---------
------S-----SS-----------------------------------------S------------------------
----------------------------------------------------------S---------------------
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----S-S-------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------
>forward_223
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-------------------------------------------GGGACCTAGGTTTTGGCGTG-----------------
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>reverse_1666
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-----------------------------------------------------------------TGTATTGTGCTGCCA
CTGGT---------------------------------------------------------------------------
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