>input_sequence_81127
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------------------------------------------------ATGGCCCGCACCAAGCAGACTGCGCGCAAGTC
CACCGGCGGGAAGGTGCCGCGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGA
AGCCGCACAGGTTCCGCCCCGGAACCGTCGCCTTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGA
AAGCTGCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTGTC
GGCGCTGCAGGAAGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGAGGG
TCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGTATCAGGGGCGAGAGGGCCTGA---------------------
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>chr2A_1_TraesCS2A01G299100
GGCTTGATGGCCGAATTACTCGCGCAACCTATTGTCTGGCACCTCGCGCCATATTTCCGTTGAGGTTCGGTCTGCAGTGT
ATTGCCTCTAACTTTTGCATATGAACTCGGATTGAGATGATTTATATATTAAAATCGATTGCCTCGATGAGACGAAGACA
ATTCCTTAAGAGTGCTCCTTCACACGAGGTTATCTTGAAGACGTGATTGGCCAAAAACCACTCGAAACATTGAATTATGC
CACTCGGAGTATAGTTTCAGTCCGTAAGATAAAGTCGAATGAATATAACCGAAACATCAAAGTGGTTCCACTCGGCGACG
TGAATCTTTTCATGCTGAAAACCCATTCACTCGAGACCATCTTCATTGCAATCTGTATCTTGCCAAAATCAGGTGTCAAC
ACCTCTGTTTTGAAAATGTGTGTGCTCCCAACAAGTTTGTTGTGGCGATCATTGTTGCTAAGCTTCCTCATTCATGAAAC
TTTATCACTTTTCTGAAACACCAAAGACAATACTAGGTCTCTCTGTTGGTTCAGATTTTTCACAGTTGACGAACTGTTTC
TTTAGAAGAAAACAGTGCCCGGCATAGGTGACCACGTAGAGCGCCGTTGGGCCATATTCGTATGATGGGC-------CCT
GGAAAAAATGAAAGAAGCGGGGCCCTGGAAAGAATATAGAAAGAAAAACAATCCAGTATCCTCTATGGGCCCGTTGATCC
TCCATAACACCATCGCAGCCAATAAGGTCACCCCATTGCCCGTCTCGCGGATCGCCACTCGCACAGGCGCCCTCC-CTGC
CGTTGGATCGCATCCGTCGCTCCAGAATCACCCAAAGGCCAACCCGCCTCACCGCGCGAAAATTTTCTCTAGCCCGCCCG
CCTCCGCAGCTGCTACAAATACAGTCCCCCCCAAATCGGGAACCCACACCGCAATCCCACATCTCCACTCTCGAACCTTC
CAAGCTCCTCCCGGTCTCCCCTCGCTTCCACCGAGTCCCTCCGATCCGATGGCCCGCACCAAGCAGACTGCGCGCAAGTC
CACCGGCGGGAAGGTGCCGCGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGA
AGCCGCACAGGTTCCGCCCCGGAACCGTCGCCTTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGA
AAGCTGCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTGTC
GGCGCTGCAGGAAGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGAGGG
TCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGTATCAGGGGCGAGAGGGCCTGATGAACGAATTCTCTCTGTCTC
TGTTCTCTGCCGCCGTTGATGTTCTTGGTGT-CGTCGTCGTGTGTTAGGATTTAGAAAATGTTGGGTTGTCGCCTGCTGC
TTACCATTACTAGTATCTTGTAGCGATGGTTCGCCTCTGGAATGTCGTTCAATGGAATGTTACCGCTGCTTCATTGCTTT
GCGAATGCT-----------------------------------------------------------------------
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-----------------------------------------------TGTGTTCATTGCATTTCTTTACGCATATGGGAT
CATCTGAATTTTGTTCTCTGAT-GAAAGCACTGTGATGTGGTTGTCACAATGGTGTTTGTGTGTAATCGAGTGGAGCATC
TTCAGTTGTCCGCACGAGCAGCAGAAATAAGTTTCAGAACGAATGC------AAGTCTGAATGTCAT-------------
-----------------------GTTGAATCTTTGCATCGAGAAGCTGCAGTTCAGCAGTTGACCATTCCGCGAGCGAGC
CATCTCTCTTTTTTTTGAGACAATTTTTTCCTTTTTAGCTTCAAGAGCCATCTCTTCTATGG-----GCCTATTTCTGTT
GGTTAGTTCTCGGCGTTGGGCCTTTTCAGTGACAGCCAAACAATAAGCCAGGCCTAGGCCCCTTGCTCACCCACGACTCG
ACCCCCAAACAGCAGATGGCGAGCATTCCGGGGATGTCTCTGTTCGCCCAGTGCTCCGCACGGC-GAGTCGGCGGGAGCC
CTGGGTGGATCGAGCTCGTTCCCCGCATCGCAGG----CCGCAGCCTATCGATCG---GTAAAGGAATTCTATACCCAGA
TTAGCCTTACTAGTCTCTAGTTCTGGTAGATAGTCTCAAGCCTCGAGGGTTCTTGTTCAAGAATACTGTATTTGGTAGGG
CAGTTCTAAAACGGAAGTAGTACTGCCGATGTCTTCTCTGAAGATTCAAGCCCACTTATTTTGATGATAACCTAGCCAAC
CTGTTGTTACTAGTTTTAGATTTAGATTGATTCCCTGAGGATTGAATGCAAGGGAGCGAAGCCCGGACCCTGGTCTTTAT
GTAATATATGGATGACCCATTCTAATTGTTTGAA
>chr2D_585
TACGTGT-------------------------------------------------------------------------
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-------------------------------CCACGCAGAGCGCCGTTGGGCCGTATTCGTATAATGGGCGGCGAGCCCT
GCAAAAAA-TAAAGAAACAGGCCCTGCAAAAGA--ATAGAAAGAAAAACAATCCAGCATCCTCTATGGGCCCGTCGATCC
TTCGTAACATCATCGCAGCCAATAAGTTCACGGCATTGCCCGTCTCGCGGATCGCCAGTCGCACGGGCGCCCT-CACTGC
CGTCGGATCGCATCCGTCGCTCGAGAATCACCCAAACGCCAACCCGCCTCACCGTGCGAAAATTTTCGCGAGCCCGC---
-CTCCGCAGCTGCTACAAATACAGTCCCCCCCAAATCGGGAACCCACACAGCAATCCCACCGCGCCATTCTCGAACCTTC
CAAGCTCCTCCCGGCCTCCCCTCGCTTCCACCGAGTCCC-----TCCGATGGCCCGCACCAAGCAGACGGCGCGCAAGTC
CACCGGCGGGAAGGCGCCGCGGAAGCAGCTGGCGACGAAGGCAGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGA
AGCCGCACAGGTTCCGCCCGGGAACCGTCGCCCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCAGG
AAGCTGCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCTGCTGTGTC
CGCGCTGCAGGAGGCCGCGGAGGCGTACCTGGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGAGGG
TCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGCATCAGGGGCGAGAGGGCCTGATGAACGAG--CTCTCTGTCTC
TGTTCTCGGCCGGCTTTGATGTTCTCGGTGTT----GTCGTGTGTTAGGATTTAGAAAATGTTGGGCTGTCGCCTGTTGC
TTGC---------TATCTTGTAGGGATGGTTCGCCTCTGGA---TTGTTCAATGGAATGATACTACTGCTTCATTGCTCT
GTGAGTGTT-----------------------------------------------------------------------
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-----------------------------------------------TGTGTTCACTGCATTTCTTTACGCGCGTGGTAT
CATCTGAATTTTGTTCTTTGAT-GAAAGCACTGTGATGTGGTCGTCACAACGGTGTTTGTGTGTAATCGAGTGGGGCATC
TTCAGTTGTCCGCACGAGCATCAGAAATATTTTTCACAACGAATGCTCAATAAAGTCTGAA-------------------
---------------------------AATCTTTGCATGGAGATGCTGCAGTTCGGTAG-------TTCCGCGAGCGAGC
CATCTCTCTTTT----GAGACAAATTTTTT--------------GAGCCATCTCTTCTATGGATTGGGCCTACTTCTGTT
GGTTAGTTCTCGGCGTTGGGCCTTTTCCGTGACAGCCGAACAATTAGTCAGGCCTAGGCCCTTTGCTCACCCACGACTCG
ACCCCCAAACAGCAGACGGTGAGCATTCCGGGGATGGCTCTGTTCGCCCAGTGCTCCACACGGCAGAGTCGGCGGGAGCC
CTTGGTGGATCGAGCTCCTTCCCCGCATCGCAGGTCAATCGCAGCCTATCCCTCG---GTAAAGGAATTCTATACTCAGA
TTAGCCTTACTAGTCTCTAGTT----------------------------------------------------------
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>chr2B_585
TACGTGT-------------------------------------------------------------------------
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-------------------------------CCACGCAGAGCGCCGTTGGGCCGTATTCGTATGATGGGCGGCGAGCCCT
GCAAAAAAGTAAAGAAACGGGCCCTGCAAAAGA--ATAGAAAGAAAAACAATCCAGCATCCTCTATGGGCCCGTCGATCC
TTCGTAACATCATCGCAGCCAATAAGGTAACGGCATTGCCCGTCTCGCGGATCGCCAGTCGCACGGGCGCCCT-C-CTGC
CGTCGGATCACATCCGTCGCTCGAGAATCGCCCAAACGCCAACCCGCCTCACCGTGCGAAAATTTTCGCGAGCCCGC---
-CTCCGCAG---------------------CCAATCCGAGAACTCACAACGCAATCCCACAGCGCCATTCTCGACCCTTC
CAAGCTCCTCCCGGCCTCCCCTTCGCTT---------CC-----TCCGATGGCCCGCACCAAGCAGACGGCGCGCAAGTC
CACCGGCGGGAAGGCGCCGCGGAAGCAGCTGGCGACGAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGA
AGCCGCACAGGTTCCGCCCCGGAACCGTCGCCCTGCGCGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGG
AAGCTGCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTGTC
CGCGCTGCAGGAGGCCGCGGAGGCGTACCTGGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGAGGG
TCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCAGGGGCGAGAGGGCCTGATGAACCAC--CTCTCTGTTTC
TGGTCTCTGCCGCTGTTGATGTTCTCGGTGTCCGTCGTCGTGTGTTAGGATTTAGAAAATGCTGAGTTGTCGCCTGTTGC
TTCC---TACTAGTATCTTGTAGTGATGGTTCGCCTCTGTAATGTTGTTCAATGGAATGTTACTACTGCTTCATTGCTTT
GTGAATGTTCAGGCGAGAGGGCCTGATGAACCACCTCCCAGTCTCTGTTCTCTGCCGCTGTTGATGTTCTTGGTGGCCGT
CGTCGTGTGTTAGGATTTAGAAAATGTGTGGTCGTCGCCTGTTGATTACTACTGTATCTTGTAGCGATGGTTCGCCTCTG
GATCGTTCAATGGAGTGTTACTACTGCTTCATTGATTTGTGAATGCGTGTGGTCAATGCATTTCCTTACGCATGTCGGAT
CATCTGAATTTTGTTCTTTGATTGAAAGCACTGTGATGTGGTTGTCACAATGGCATTTGT-------CGAGTGGAACATC
ATCAGTTGACCGCACGAGTAGTAGAAATAAATGTCAAAACGAATGCTCAGTTTAATCTTTCTGAATGTTATGTTTAATCT
TTGCATTTTCCGCAAAAAAAAAAGTTTAATCTTTGCATCGAGAAGCTGCAGTTCGGTAGTTGGCCATTCCGCGAGCGAGC
CATATTTTCTTTTTCTTT-------------TTTTGAGTTTCAAGAGCCACCTCTTGTATGG-----GCCTATTTCTGTT
GGTTAGTTCTGGGCGTTGGGCCTTTTCCGTAACAG---------------------------------------------
----CCAAACAGCAGACGGCGAGCATTCCGGGGAGCCGGC----------------------------------------
--GGGTGGATCGAGCTCGTTCCCCGCATCGCAGA----TCGCAGCTTATCATAGCTCTGTAAAGGAATTCTACACTCAGA
TTATCCTCACTAGTCTCTA-------------------------------------------------------------
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>SNPs
SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------S--------------------------
-S------SS------S----S--SSSS-----SS---------------------S-----------------S-----
-S-S-----S---------------------SS------------------------S------S--------S------
---S------------------S-------------S-----------------S------------S-S-------SSS
S------------------------------------------------------------S-S---S------------
--------------S------------------------SSSSS------------------------S-----------
--------------S-----------------------------------------------------------------
--------------------------------S----------------------------------------------S
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S-----------S-----------------S--S-----S----------------------------------------
-------------------------------------S----------------------------SSS-----------
-------------------------S--------------------------------------------------S---
--S-SSS----------------S---------------------S-----------------SS---------------
-S-----S------------------------------------------------------------------------
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-------------------------------------------------------S-----------------S------
-----------------S--------------------------------------------------------------
------------------------------S-----S--------------------------SSSS-------------
--------------------------S---------------------------S-S-----S-----------------
--------------S--------S-----SS----S--S-----------------------------------------
---------------------------S---------S------S--S-------------S------------------
----------------S-------------------S--------------------S----------------------
--------------------------------------S-----------SS-----------------------S----
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_74
------------------------------------------------------TTCCGTTGAGGTTCGGTCTG------
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>reverse_1585
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----------------------------------------------------------------GCTGCTTCATTGCTTT
GCGA----------------------------------------------------------------------------
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