>input_sequence_81123
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------------------------------------------ATGATACTAAGAGATTCAGAGGGAGCAGTCATCTTCTC
AGCTTATCG---TTATCTGTTCCATTGCAAAGATGCCCTAGAATCTGAAATCAGTGCTGTCTTGGAAGGAGTTTCACTCA
GTTTGGAACGATCAAATCTTCCTATTGTAGTTCAGTCTGATAGCTCTATTGTGGTTGCAGCATTGACGGATGATTCACTC
CAAAGATCTGCTTATGGACACCTTATAATGGAAATCAAAAGACTCCTGGAACCGCGTGGGTTTATTCCGCAGAAGCTCGA
GCGTCATCAAAAT---GTTGCTCATAGTCTTGCTAATATTGGCCGTTCTGGAGGTAGCACCGCCTGTTGGTTGCGCCATG
TCCCAGTCAGTATTTCTAACCTTGTATTAGCCGACTGTAACACTATTACCGAGGAATAA---------------------
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>chr1D_1_TraesCS1D01G163500
AGGAACCCTCGGTCTTGGCGCAGTGCGTTTCCCCC-TAGGCCGGTTCGTGCGGGATACAAGGAGAGAGGCAGGAGCGCAG
CGAAGCGTTTTTTGGTGCAACAAAGTGTTATTCTCTCGAGTGGCATTCTCACCGTTATTTTTGTAAAACTAGGAGGGCAG
AGAAATTTAGCACTTTGAAATTTTAAGTGGAGACGCTCAGGAGTATACCCTCTTGTGCCTTCTTTCAACTGTGAAGGAAG
GAGCCGTAGGGAGAAACTAAGCCTGTAGCACAAAATCGAGTTCTTTTGTGCTAGAGCTTAAATCCTGTTATAAACTACCT
ATAAGCTCTTGTCGTAAACTAAGTCATGTGTTCCAGCTTCGGTTGAATTAAAAATATAATCAACA-AAATATTTTTTAAG
GCCCTGGATTCTCTATTCTTGAATAGTTGCAACCCAGTGCCTACTTTTCCTAAGTATCCACACCAACAGGTTATGCATGC
CGACCATGTCATCACATGCCATCTCATGCATGAGGTGTGGAGAATTGATTAAACTCGATACTACACATTGCTTATTGGTA
TTTGGTTATCTGTCCTAAGTCACATGAGTTCTGGGATGAGATGCGCCAAGTCTGGCCATTGCCAGCAAAGGAGCAAGTTC
TGGACACCGGTAAAGAGTGGTTGTTTACTGCCTTGCAGGCTCAAAATGAAGATGTACGAGCCATGGTAATCATGTTACTT
TGGCGGATCTGGAGTCTACGGAATGACATGCTCCATGATAAGCCGACTCCACTGCCTGATATCTCTAGAACTTTTCTGAC
TAGCTACCTAAGTTCCTATAGTCAAGCTCAGAATTATGGTATCGAGGAGATCATCAAAGGAAAAATGACCGTGGGAGAGA
GGCCTTACAGATTGGTTCAGGAGCGGGAAGGAAAGAAACCTTGGCCTAAACCTCCTATGGGCTGGGTGGCTCTATCAGTA
GATGGTTCTTATGTTAAAGAAACTGGTTTGGCCGGCTCAGGTATGATACTAAGAGATTCAGAGGGAGCAGTCATCTTCTC
AGCTTATCG---TTATCTGTTCCATTGCAAAGATGCCCTAGAATCTGAAATCAGTGCTGTCTTGGAAGGAGTTTCACTCA
GTTTGGAACGATCAAATCTTCCTATTGTAGTTCAGTCTGATAGCTCTATTGTGGTTGCAGCATTGACGGATGATTCACTC
CAAAGATCTGCTTATGGACACCTTATAATGGAAATCAAAAGACTCCTGGAACCGCGTGGGTTTATTCCGCAGAAGCTCGA
GCGTCATCAAAAT---GTTGCTCATAGTCTTGCTAATATTGGCCGTTCTGGAGGTAGCACCGCCTGTTGGTTGCGCCATG
TCCCAGTCAGTATTTCTAACCTTGTATTAGCCGACTGTAACACTATTACCGAGGAATAAAACCCTTTCTTTGCATGCAAA
AAAAGTCACAACACAAAATATATATTGCAATCATCTTAACACAATTTGTTTTTGCGGTGCGGTAACGATGTTTCA--GAT
ACATGACTCGAGCTTCCCCACAGCAACGCACGAGAAATCATCTTATTTATATTATAAAGGACATCCAATACTACAAGACA
TCATAAAAACAAGT---TTACATCTAGGTTTTTTAGAGTGTCAAACAAACTCAATCTCCACCATAAGCCGAAGGCGTTCC
GCCACCGCCGCTCCGTTGCTGGAGTCGGCCTAATATTGTATCCTTCGGTCGGCAATTAATCATGCTAAGATCCAGTTGGA
TCAATGCGTCTGAGAAGAAGTTGCCATCGTAGAATCCTTTCGTAGATATTCAAACCATCTCCTAAACAAAACTTTCGCCA
GCTTCGCAACGACGGCGACAGAGAGAACACCTTTGCATGCGAGAAGGAGCATGACCTGCACGCAAGCGAAGAGCAAAATC
TGTCATGTCAGAGAGACACCCAAATGAAGAAAAAGAGACCATACTCTTGTAGCTACCAC-AAAAAGGCCAGGGAAATATC
TCCCG-ACCCC-ACGGGTCAATTCTTCTTTGATGACGCCTCATGTTGTCCGCAACACCATCACCTTAAGGAGCATGAAAA
AGAGGACCGTCTTGACGTGAACACCATGACACACAAAAGCACCCGCCCAGATTCATAGGACCTGAGACAGAGCAAGACTC
TGCCTCCTAGATCCAACACTAATAGCGGCGAGAACATCTGTATCGAAGGGAGATATAACCAAAACACATTTGCTGCCACC
ATTGCCACCATCGGAACCAGAGCCATGAACAATCAAAACCCTCACCAAAAAACCCCATACTCCTGGACACACGCGGAATA
AGGCATCACGATTCCCCTCCCTCCCGTTGTCACTTGGGCAGTCGGCGGAGATGTGGGAACTCCAATAACGTTTGTGTCGA
GGTTGCTTTCTTTCTCCTCTCTCTACA
>chr1B_1
AGGAACCCTAGGTTCTAGCACAATGCATTTTCCCCCGAGGCCGGCTAGTGCGGGATACAAGGAGAGAGGCATGAGCACAA
CGTAGTGCTTTTTGGTGCAACAAAGTGTTATTCTCTCGAGTGGCATTCTCATTGTTATTTTTGTAAAACTATGAAGGCAG
AGAAATTTAGCACTTTGAAATTTTAAGTGGAGACGCTCAGAGTGTAC--------------CTTTCAACTGTATAGGAAG
GAGCGGTAGGGAGAAACTA--------GCACAAAATCGAATTCTTTTGTGCTAGAGCTTAAATCCTGTTATAAGCTACCA
ATATGCTCTTGTCGCAAACTAAGTCATGTGTTCCAGTTTCGGTTGAATTAAAAACATAATCAACAAAAATATTTTTTAAG
GCCCTGGATTCTCTATTCTTGAATAGTTGCAACCCAGTGCCTACTTTTCCTAAGTATCCACACCAAGAGGTTATGCATGC
CGGCCACGTCATCACATGCCATCTCATGCATGTGGTGTGGAGAATTGATTAAACTCAATACTACACATTGCTTATTGGTA
TTTGGATTAAAAAGTGA---------------------------------------------------------------
-------------------------------------------AAAAGAAGAAGTGG-----------------------
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AAAAGACACAACACAAAATATATATTGCAATTATCTTAACACAATTTGTATTTGCGGTGCGGTAACGATGTTTCATAGAT
ACATGACCCGAGCTTCCCCGCAACAACGCACGAGAAATCATCTTATTTATATTATAAAGGACATTCAATATTAGAAGACA
TCATAAAAACAAGTAAGTTACATCTAGGTTTTC-AGAGTGTCAAACAACCTCAATCTCCATCATAAGCTGAAGGCATGCC
GCCACCGCCGCTCCGCTGCTGGAGTCGGCCTAATATTGG----------------------------------------A
CTAATGCCTC-GAGAAGAAGCCGCCATCGTAGAATCCTTTTGTAGATATTCAAACTATCTCCTAAACAAAACTTTCGCCA
GCTTCGCAACGACGACGACAGAGAGAACGCCATTGCATGCGAGAAGGAGCATGACCTGCACACAAGTGGATAGCACAATC
TATCATGTTAGAGAGACGCCCAAATGAAGAAAAGGAGGCCATAGTCTCGTGGCTACCACAAAAACGGCCAGGGAAACACC
TCTCG-ACCCCCACGTGTCAACTCTTTTCTGATGACGCCTTAGGTTGTCCGCAACACCACCACCTCAAGAAGCGA-AAAA
AGAGGTCCGTCCTGACGTGAACGCCATGACACACAAAAGCACCAGTCCAGATTTGTAGGACCCGAGACAGAGC-AGACTC
TGCCTCCTAGATCCAACACTGATAGTGGCGAGAACAACTGTATCGAAAGGAGATCTAACGAAAACACATTCGCTGCCACC
ATTGCCACCGTCGGAGTCGGAACCATGAACAATCAAAACCCT---------ACCCCATACTACTGGACACACGCGGAATA
AGGTATCCCGATTCCCCTCCCTCCTGTTGTCACTTGAGCAATCGGCGGATATGAGGGAACCCCAATAACGCAGGTGTCGA
GGTTGCTTTCTCTCTCCTCTCTCTACA
>chr1A_27
--------------------------GTTTCCCCCCTAGGCCGGGTCGTGAGGGATACAGGGAGAGAGG--------CAA
CGAAGTGTTTTTTGGTGCAACAAACTGTTATTCTCTTGAGTGGCATTCTCGTCGTTATTCTTGTAAAACTATGAGGGCAG
AGAAATTTAGCACTTTGAAATTTTAAGTGGAGACACTCAGGAGTGTACCCTCTTGCGCATTCTTTTAACTAT---GGAGG
GAGCGGTAGGGAGAAACTAAGCCTGTAGCACAAAA-------------TGCTAGAGCTTAAATCCTGTTATAAGCTACCT
ATAAGCTCTTGTCGTAAACTAAGTCATGTGTTCCAGCTTCGATTGAATTAAAAACATAATAAACAAAA-TATTTTTTAAG
GCCCTGAATTCTCTATTCTTGAATAGTTGCAACCTAGTGTTTACTTTTCCCAAGTATCCACACCAACAGGCTATGCATGC
CGGCCATGTCATCACATGCCATCTCATGCATATGGTGTGGAGAATTGATTAAACTCGATACTACACATTGCTTATTGGTA
TTTGGATTAAAAAGTGAA--------------------------------------------------------------
------------------------------------------AAAAAGAAGAAGTGG-----------------------
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AAAAGGCACGACACAAAATATATATTGCAATCATCTTAACACAAATTGTATTTGCGGTGTGGTAACGATGTTTCATAGAT
ACCCGACCCGAGCTTCCTCGCAGGGATGCACGAGAAATCATCTTATTTGTATTAAAAAGGACATCCAATACTACAAGACA
TCACAAAAATAAAGAAGTTACATCTAGGTTTTC-AGAGTGTCAAACAAACTCAATCTCCATCATAAGCTGAAGGCATGCT
GCCACCGCCGCTCCGCTGCTGGAGTCGGCCTAATATTGTATTCTTCGGTTGGCAATTCATCATGCTAAGATCTAGTTGAA
CCAATGCCTCGAAGAAGAAGCTGCCATCGT-GAATCCTTTCATAGATATTCAAACCATCTCCTAGACAAAACTTTCACCA
GCTTCGCAACGACGACGACAGAGAGAACAACATTGCATGCGAGAAGGAGCATGACCTGCACGCGAGCG------------
----------GAGAGACACCCAAATGAAGAGAAGGAGGCCATAGTCTCGTGGCTACCACAAAAATGGCCACGGAAACACC
TCCCCAACCTCCATGTGTCAACTTTTTTTTTATGAAGCCTCAAGTTGTCTGCAAAACCACCACCTCAAGGAGCAAGAAAA
AGAGGATCGTCTTGACGTGAGCG-CATGACACACAAAAGCACCCGGCCAGATTTA-AGGACCCGAGACAGAGC-AGACTC
TGCCTCCTAGATCCAGCACTAATAGCGGCGAGAATAATTGTATCAAAATGAGATCTAACGAAAACACATTTGCTGCCACC
ATTGCCACCGTCGGAGCCGTAGCAATGAACAATCAAAACCTAAT-CAAGAAACCCCATACTGTTGGACACACGCGGAATA
AGGTCTCGCGATTTCCCTCCCTCCCGTTGTCACTTGGGCAGTCGGCGGAGATGAGGGAACCCCAATAACTCCGGCGTTGA
GGTTGCTTTCTCTCTCCTCTCTCTA--
>chrUn_560
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-TTGGTTATCTGTCCTAAGTCATATGAGCTCTGGGAGGAGATGCGCCAAGTCTGGCCATTGCCAGCAAAGGAGCAAGTTC
TGGACACGGGTAAAGAGTGGCTGTTTACTGCCTTGCAGGCTCAAAATGAAGATGTACGAGCCATGGTAATCATGTTACTT
TGGCGGATCTGGAGTCTACGGAATGACATGCTCCATGATAAGCCGACTCCACCGACTGATATCTCCAGAACTTTTCTGAC
TAGCTACCTAAGTTCCTATAGTCAAGCTCAGAATTATGGTATCGAGGAGATCATCAAAGGAAAAATGACCGTGGGAGAGA
GACCTTACAGATTGGTTCAGGAGCGGGAAGGAAAGAAACCTTGGCCTAAACCTCCTACGGGCTGGGTGGCTCTATCAGTA
GATAGTTCTTATGTTAAAGAAACTGGTTTGGCCGGCGCAGGTATGATACTAAGAGATTCAGAGGGAGCAGTCATCTTCTC
AGCTTGTCG---TTATCTGTTCTATTGCAAAGATGCCCTGGAATCTGAAATCAGTGCTGTCTTGGAAGGAGTTTCACTCA
GTTTGGAACGATCAAATCTTCCTATTGTGGTTCAGTCTGATAGCTCTATTGTGGTTGCAGCATTGACGGATGATTCACTC
CAAAGATCTGCTTATGGACACCTTATGATGGAAATCAAAAGACTCCTGGAACCACGTGGGTTTATTCCGCAGAAGCTCAA
GCGTCATCAAAATAGTGTTGCTCATAGTCTAGCTAATATTGGTCGTTCTGGAGGTAGCACCGCCTGTTGGTTGCGCCATG
TCCTAGTCAGTATTTCTAACCTTGTATTAGCGGACTGTAACACTATTATCGAGGAATAAAACCCTTTCTTTGCCCGCAAA
AAAA----------------------------------------------------------------------------
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>chr3B_765
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----------------------------------------------CTCCACCGCCTAATATCTCCAGAATTTTTCTGAC
TAGCTACCTAAGGTCCTATAGTCAAGCACAGAATTATGGTATTGAGGAGATCATCAAAGGAAAAATGACCGTGGGAGAGA
GGCCTCGCAGATCGGTTCATGTGTGGGAAGGAAAGAAACTTTGGCCTGAACCTCCTACGGGCTGGGTGGCTCTATCAGTA
GATGGTTCTTATGTTAAAGAAACCGGTTTGGCTGGCTCAGGTCTGATATTAAGAGATTCAGAGGGAGTAGTCATCTTTTC
AGCTTATCGTTATTATCTATTCCATTGCAAAGATGCCCTAGAATCTGAAATCAGTGCTGTCTTGGAAGGACTTTCACTCA
GTTTACAACGATGAAACCTTCCTATTGTGGTTCAGCCTGTTAGCTCTATTGTGGTTGCATCATTGACGGATGATTCACTC
CAAAGGTCTGCTTATGGACACCTTATGATGGAAATCAAGAAACTCCTGGAACCGCGTGGGTTCATTCCGCATAAGCTCGA
GCGTCATCAAAATAGTGTTGCTCATAGTCTAGCTAATATTGGTTGTTTTGAAGGTAGCACCGCCTGTTGGTTGCGCCATG
TCCCGAACAGTATTTCTAATTTTATATTAGCCAACTATAACACTATTATCGAGGAATGAAACCCTTTATTTGTTCGCAAA
AA------------------------------------------------------------------------------
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>chr7D_911
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--------------------------------AAGATGCCTTGGCCAAAACCACCAGCTGGGTGGGTTGCTCTATCTGTT
GACGGCTCCTTCGTCAAAGACACCGGACAGGCAGGGACTGGCATGGTTCTATGGGACTCGGATGGCGTGGTCATCTTCTC
GGCTTACAG---ATGTCTATTCAACTGTAAAGATGCCTTAGAGTCCGAAATCAGTGCAGCTTTGGAGGGCATTTCATTCT
GCTTGCAAAGGTCAGATCTCCCGGTTGTAGTTCAATCTGACCCTTCTATCTTGGTTGCTGCCTTAACGGACGAGTCGTTG
GACAAATCTGAACATGGACATCTCATTCTGGAAATTAAGAAGCTCCTGGAATCGCGTGGGTTTATTCCGCAGAAATTAGA
TCGTCATCAAAATAGTGTTGCTCATTGTTTAGCTAATATTGGTCGTTCTGGAGGTAGCACCGCCTGTTGGTTGCGCCGTG
TTCCAGACAGTGTATCTAGTTTTGTATTAGCAGACTGTAACACTATTTCAAAGGAATAAA--------------------
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>SNPs
---------S---SS-S--S--S---------------------S--------------------------S----S--S
-----S---------------------------------------------S-------------------S--------
--------------------------------------------S----------S--S-------------SS------
----S----------------------------------S---------------------------------S------
------------------------------------------------------S-------------------------
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--S-----------------------------S-----------------------------------------------
----------------------S-----S-------S-------------------------------------------
-------S------------S-----------------------------------------------------------
----------------------------------------------------S------------S--------------
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---------------------------------------------------------S----------------------
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--------------------------S-----------------------------------------------------
------------------------------S-----------S-------------------------------------
-------------------------------------------------------------------------SS-----
-----S-------------------------------------------S------------------------------
-------S-----------S------------------------------------------------------------
--------------------------------SS--------------------------S-------S------S-S--
---------------S-------------------------S-------S-------S--------------S-----S-
S------S--S---------S-----------------------------------------------------------
--------------S----------------S------------------------------------S-S----S----
-S------S------------------------S---S-----S---S--S-------------S-----------S-S-
---------------S-----S----S---------------S----------------S-----S--------S-----
----------------------S----------------------S-------S--------S----------S------
------------------------------------S----------S------S----S--------------------
---------S-----S--S-----------------------SSS---S------------S------------------
---S---S---------------------------------------------S------S---------SSS-------
-----------S---------------
>forward_648
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--------------------------------------------------------------------AGGAGCAAGTTC
TGGACACC------------------------------------------------------------------------
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>reverse_2302
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-------------------------------------------------------------CCTGGACACACGCGGAATA
A-------------------------------------------------------------------------------
---------------------------
