>input_sequence_81107
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---------------------------------------ATGCACCGAAACCCTCGCGTCCTCCTCCGCGCCGCCGCCTA
TCTCCTCCGCCCCTCCACCGCCGCCCCGCAACCCCTAACGAACGCCAGACCTCCCCTGCCACTTTCTCCGCGGGGCCTCA
TCCTCCCTGCACAACGCCGCGCCTTCTCGACGGACTACGGCAAGGACGTCGACGAGGTGAACCGCAAGTTCGCCGAAGCG
CGGGAGGAGATCGAGGCTGCCATGGACAGCAAGGAGACGGTGTACTTCAACGAGGAGGCCGCCTGCGCGCGCGACGCGGC
CGGCGAGGCCCTCGGCGCCTTCGACGCGCTGCTTGCGCGGGTCCCGCCCGCAGACGCCGACGCGCTCCGCAGGTCCATGG
GGCTCAAGATGGAGCAGCTCAAGGCCGAGCTCAAGCAGCTCGAGGAGTAG------------------------------
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>chr1A_1_TraesCS1A01G120500
CCTGCTGCGGGGCTCGCTCTACAGTAGCCGAAAGCGCATTACAACACCGTCATGGTGGAGACGCAACCGGAGAAGCAGAC
GCTGCCGGTCTCCGCGTTTCAGATGCTACAGGAGAAGCAGTGGTACAACTTGCAGCTCCTAGAGCACCATCGACTCACGG
ATGGCTAGATCACCGGCGAGCATGCGAACGCGAAGGTCATCACGGGCATGCTCGCACAGAATCCGGGGCATCACGGATGA
GCAGCGGACGATGTACGAGTCCGTGTGCAGTGCTTGCGCCATCCGTCGCGAGCGGTGACGTCTCCGCATCAATGAGGCGT
AGTACGACTGCATGTTCGGGGAGATCGCGGCGGAGGTGAACACAGATGCGGTGACGGACTGAAACACTGCCAACGTCGGC
AACTCCACGCCGTTCGAGTCGGGCTAACGAACATGAGGCTGGACCTTCCACGTAGATTGCTGAGCTCATCTCCATGGGCG
ACGTTGCCGTCGACGGGCTCCAAC----AGTAGGGCATGGGAGCA-GACGTGCCCATGTCCGACAT--------------
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--------------------------------------------GGATAAAGACCCTTAACTTTTGCTATGTACAATATT
AATG--AATTTTTTTGTCCAATTTTATTTGATGCATCGGGGTGTATGATCGGTTCTCTTAAAACTATCCGTGGACATGTT
GTACGGATATTTGCCATGTTTTTGTTTTGATGTAGGACC-TGATAAGTACCGAGCGTCAAGTACGAAAACATGACAATTC
CGAATATTTTGGATGACAATTTTAGTAAGCGCGATGGTGACAACCTTAAATGTCAAGCATGACAACTTTCGTGCTTTAAT
TTATTTTTGACAGAAACTTATGATATATCCTACCAAATTTGCTATTACGTGACTGAAAATGTCATCGAAAAACCGAATGG
CACGAATT------GTGGCACTTGTAATTTGGGTTGATGTATAGTGTTGAAGATGCCCTAACCACCGACAG------GGA
AGGAGAAG-AGAAAGAGAAACCCACCCCCGCAAGCGAGGATGCACCGAAACCCTCGCGTCCTCCTCCGCGCCGCCGCCTA
TCTCCTCCGCCCCTCCACCGCCGCCCCGCAACCCCTAACGAACGCCAGACCTCCCCTGCCACTTTCTCCGCGGGGCCTCA
TCCTCCCTGCACAACGCCGCGCCTTCTCGACGGACTACGGCAAGGACGTCGACGAGGTGAACCGCAAGTTCGCCGAAGCG
CGGGAGGAGATCGAGGCTGCCATGGACAGCAAGGAGACGGTGTACTTCAACGAGGAGGCCGCCTGCGCGCGCGACGCGGC
CGGCGAGGCCCTCGGCGCCTTCGACGCGCTGCTTGCGCGGGTCCCGCCCGCAGACGCCGACGCGCTCCGCAGGTCCATGG
GGCTCAAGATGGAGCAGCTCAAGGCCGAGCTCAAGCAGCTCGAGGAGTAGTGGTTGCTCCAGGCC----------GTTCT
TTGATGAGCGCATCGAGGTCAGAGATTTCTTCTTTTGGGAACAAATCTTGGCGATCTTTGTTTTAGTTAGTACTTATATG
TTCCTATAGTAGTTCCTGGATATTCTGATTGGGAAATAAAATTAAGGCTGCACTTCATTCCTGTTGTGGGAGATTACATT
TGGAGCTAATTGTCCATGCTGATGCAAATTG------GTAGCATACAATTTGTACCAGCAAAATTGGTATTTATGTTCAT
TCTGGATTGATGGAGCCTCAGAATTAAATTAGAAGAGCGAAGCATGTAATTTGTTCCTGTGCCAATTGTGATATTATTAA
TTGAGGTTAACAGTTAAAAAGGATGGTCATATTTGCATATGCCTTGCTTGATAATTTCTTCTTGAAAAAAATTGAGCAAG
GAGCCAGGGAGATAGGATAGATATGTTAACTTCAGATATGTAGGTGCGTGGTGAATGAATGG-----AATGTGACTGGCG
CAATGCTGTTATGATAGACAAGAGGGTTTTAAGCTGCAACTATCATTTGCTATCTGTAGTAATGCTTGGGAAAACTGGCA
GCTTTTGATGACATCTTTTCTGACAAAAGGCAGTTTACACTGCTTTCGTTACAAATAGATAGGATAGGAACAGAGTTTTA
CAGCCCAGGCACTAAACCTGAGTGAAATGCTCCCAAAGAAGGAGAAAAGAA-----AACAAAACGAAGGGGGAAACAGGC
AATCTCGCATTTAATCAGGCTCACAAGGATGGCCGGCAAGCAGTAGGACACGCATCTGGCCAGCCTCAGTCGACATCTGA
GCCTCCATCTGGAGTTTCCGGAACAAAGTGGTGACTGAGCATGAGTGATGCCTGAAGACACATTCATTCCTTTCTTTCCA
GATTGACCACCAA-ACGAGCGCCACGATCGATCTCCGGGACTTGGCTGCATCTTGAGTGAGACCCAAGGAGCTACGGTCG
CACCAAGCAGTCAAGAGTACCATCAGGTTTTGCCGGA
>chr1D_1
CCTACTGCCGGGCTCGCTCTGCAGTAGCCGAAAGCGCATTACAATACCGTCATGGTGGAGACGTAACCGGAGAAGCTGAC
GTTGCCGGTCTCCACGTTTCGGATGCTACAGAAGAAGCAGTGGTACAACTTGCAGCTCCTAGAGCACCATCGACTCACGG
ATGGCCAGATCGTCGGTGAGCATGCGAACGAGAAGGTCATCACGGGCATGCTCGCGGAGAATCCGGGGCATCACAGATGA
GCAGCGGACGATGTACGAGTCCGTGTGCGGTGCTTGCGCCATCCGTAGCGAGCGGCGACATCTCCGCATCAATGAGGCGG
AGTACAACCGCATGTTCACGGAGATCGCGATGGAGGTGAACACGGATGCGGTGACGGACTGGAACACTGCCAACGTCGGC
AACTCCACGTCGTTCGTGTCGGGCTAACGAACACGAGGCTGGACCTTGCACGTAGATTGCCGAGCTCATCTCCACGGGCG
ACGTCGCCGTCGACGGGCTCCAACAAGGAGTAAGACATGGAAGCATGATGTGCCCACGTCCTACATTTTTCCGATAAAGG
GTGGCTTTTATTTACTCAGAATGAAGCATCAAGTGGATACAAACACATTGAGCACACACCCGGCCTCTGCATGGCTAGGA
TGCACACAACCAATAGTAATGCACACACACAAATAAACACGCCGCAAAGAGCAAAATCATACAAGACCAAAGCTATGCCT
AAGCGAGAAAAAGAAAAAGAAAAACCCAAAGTGATCTAAACAACGATCGACAAACTATGTCAACGACCATATCCATACCA
ACCACCCTTTGACACCACAAAGACACCGAGGTTCTTCAACAGCAACGCCTTCAGAAAGGGAACAACGCTCAAGCGTCATC
GTCACCGGATCCAACAAATGCCAGATTCTAGGTTTTCACCCTGAAGAATAAGTCCGAGCATATCCGAGCAATGCCTTCAA
CAAGGTAACGACGCAAAAACATCGCCATTGCCATGCATAACCAACTAAGGTCAAACCTAGGTTTTTCACCCGGAGCTCTA
GAGCGGGTACTCGAGAAGCACCACCACATCGAAGTCAATTGTGTGTTGTCGCCACCACTTTTCCACGATCCTAACAACTT
CATGCATTGGGCTAGAAATCCCACCGCCGTCGTTGCACAACCATACCCTGTGCGTCAAGTCGCCGTCTATAGATTGTATC
TCATCGTTGAAGACAAACTGGCCAGAGTGAGAACCGCCAAAACTCATAAAGAAGTCCTTCAGCTGCATCCCACAACCATG
CCAATAGGATCAACCGATAGCAGCCATCAGATCTAAGGGAAAATCCTCGTGAAGATCCTTCAATGACCGCCACAATCCGC
AACTCCAGAGGCCGACCGATGCCGGCGCGGTTATGCACCGTTGCCGGCAGCGTCGTCAATGCGGAGACCGCCGTCATAGG
TCAGACAGAGGCCAATAGGGGTCCCATCCAACGCTAAGCCGGAGCCTGCCACCACACGGTTCATCACCAATGATGGAGCG
CATGCGGGAGCCGCATCGGCGCTGGCCACATGGATCTGAACAGACGGGCTAGAGACAGATCGCTCCTTGGGCCGTTTCGC
TCCGGCGACCTCCGGCCGGCCAGACCCGTCAGATTGGAACCACCGCTCATCAACAAAGAGCCACAACCAGCAGGCCATAA
TCCCGCATCCAGTAGGGATCCAACGGTTGACCAGCAGTAGGACATACACGTAGCCAAAGGCAGCGGAATGGATCTCGTGA
TGATCAACCGTACAATCACCTGGAGGAGAAGCAGCAAGGAGAAAGAGAGATCCCGCCGCCACCGGCGACCGCGCGGGGCT
TTGCCCTGGAGGTGATGACCGGCGGCGGCGAGGAGGAGAGGCCGGCGAATGGGTTATTGCGGTGGAGGCGCTGGTGCCGG
CCGAGTCGCCCGGAACGAGCGACGCGGGGGCCCACGTCCTACATGGATAAAGACCCTTAACTTTTGCTATGTACAATATT
AATGAAAATATTTTTATCCAATTTTATTTGATGCATCGGGTTGGATGGCCAACTCTCTTAAAACTATTCGTGGACATGTT
GCACGAACATTTGCC--GTGTTCGTTTTGATGTAGGACCCTGATAAATACCGAGTGTCAAGTACGAGAACACGACAACTC
CGAACATTTTGGATAGCAAGTTTAATGAACGCGATGGTGATAACCTTAGATGCCAAGCATGACAATTTTCGTGCTTTAGT
TTATTTTTGAC-GAAACTTACGATATACCCTACCAAATTTGCTATTACGTGACTGAAAATGTCATCGAAAAACCGAGTGA
TACGAATT------GTGGCACTTGTAATTTGGGTTGATGTATATTGTTGAAGATGCCCGGAATACCGACAG------GGA
AGGAGAAGGAGAAAGAGAAACT-ACCCCCGCAAGCGAGGATGCACCGAAACCCTCGCGTCCTCCTCCGCGCCGCCGCCCA
TCTCCTCCGCCCCACCACCGCCGCTCGGCAACCCCTGACGAACGCCAGACCTCCACTGCCGCTTTCTCCGCGGGGCCTCA
TCCTCCCTGCACAACGCCGCGCCTTCTCGACGGACTACGGCAAGGACGTCGACGAGGTGAACCGCAAGTTCGCCGAAGCG
CGGGAGGAGATTGAGGCTGCCATGGACAGCAAGGAGACGGTGTACTTCAACGAGGAGGCCGCCTGCGCGCGCGACGCGGC
CGGTGAGGCCCTCGGCGCCTTCGACGCGCTGCTCGCGCGGGTCCCGCCCGCAGACGCCGACGCGCTCCGCCGGTCCATGG
GGCTCAAGATGGAGCAGCTCAAGGCCGAGCTCAAGCAGCTCGAGGAGTAGTGGTTGCTCCAGGCC----------G----
------AGCGCATCGAGGTCAGAGATTTTTTCTTTTGGGAGCAAATCTTGGCGATCTTTGTTTTAGTTAGTACTTATATG
TTCCTAAAGTAGTTCCTGGATATTCTGATTGGGAAATAAAATTAAGGCCGCACTTTATTCCTGTTGTGGGAGATTACATT
TGGAGCTAATTGTCCATGCGGATGCAAATTGAAATTGGTCGCATACAATTTGCACGAGCAAAATTGGTATTTATGTTCAT
TCTGGATTGATGGAGCCTCAGAATTAAATTAGAAGAGCGAAGCCTGTAATTTTTTCCTGTGCCAATTGTGATATTATTAA
TTGAGGTTAACAGTTAAAAAGGATGGTCATATTTGCATATGCCTTGCTTGATAATTTCTTCTTGAAAAAAATTGAGCAAG
GAGCCAGGGAGATAGGATAGACATGTTAACTTCAGATATGTAGGTGCGTGGTGAATGAATGGAGCATAATGTGACTGGCG
CAATGCTGTTATGATAGACAAGAGGGTTTTAAGCTGCAACTATCATTTGCTATCTGTAGTAATGCTTGGGAAAACTTGCA
GCTTTTGATGACATCTTTTCTGAGAAAAGGCAGTTTACACTGCTTTCAATACAAATAGATAGGATAGGAACAGAGTTTTA
AAGCCCAGGCACTAAACCTGAGTGAAATGCTCCCAAAGAAGGAGGAAAGAA-----AACA-----AAGGGGGAAACAGGC
AATCTCGCATTTAATCAGGCTCACGAGGATGGCCGGCAAGCAGTAGGACACGCATCTGGCCAGCCTCAGTCCACATCTGA
GCCTCCATCTGGAGTTTCAGGAACAAAGTGGTGACTGAGCATGAGTGATGCCTGAGGACACATTCATTCCTTTCTTTCCA
GATTGATCACC-A-ACGAGCGCCACGATTGATCTCCGGGACTTGGCTGCATCTTGAGTGAGACCCAAGGAGCTACGGTCG
CACCAAGCAGTCA-GAGTACCATCAGGTTTTGCTGGA
>chr1B_536
CGACG---------------------------------------------------------------------------
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--------------------------------------------GGATATAGACCCTTAACTTTTGCTATGTACAATATT
AATGAAA-TTATTTTGTCCATTTTTATTTGATGCATCGTGTTGGATGACCAATTCTCTTAAGA-----------------
-----------------------------------------------------GCGTCAGGTACGAGCACATGGCAACTC
CAATCATTTTGGATGGAAAGTTTTGCGAGCGTGAAGATGACAACTTTAGATGCTAAGCATGACAACTTCTGTGCTTTAGT
TTATTTTTGACAGAAACTTA--------------------------------CAGTAATTGTCATAAAATAACCGGGTGA
CTAAAACAAGACCCGTGGCACTTGTAATTTGGGTTGATGTATAGCGTTGAAGATGCCCTAAACACCGACAGGGAAGGGGA
AGGAGAAGGAGAAAGAGAAACT-ACCCCCGCAAGCGAGGATGCACCGAAACCCTCGCGTCCTCCTCCGCGCCGCCGCCTA
TCTCCTCCGCCCCACCGCCGCCGCTCGGCAACCCCTGACGAACGTCAGACCTCCCCTGCCGCTTTCTCCGCGGGGCCTCA
TCCTCCCTGCACAACGCCGCGCCTTCTCGACTGACTACGGCAAGGACGTCGACGAGGTGAACCGCAAGTTCGCCGAAGCG
CGGGAGGAGATCGAGGCTGCCATGGACAGCAAAGAGACGGTGTACTTCAACGAGGAGGCCGCCTGTGCGCGCGACGCCGC
CGGTGAGGCCCTTGGCGCCTTCGACGCGCTGCTCGCGCGGGTCCCTCCCGCAGACGCCGACGCGCTCCGCCGGTCCATGG
GGCTCAAGATGGAGCAGCTCAAGGCCGAGCTCAAGCAGCTCGAGGAGTAGTGGTTGCTCCAGGCCGTTCTTTGATG----
------AGCGCATCGAGGTCAGAGATTTTTTCTTTTGGGAGCAAATCTTGGCGATCTTTGTTTTAGTTAGTA----TATG
TTCCTAAAATAGTTCCTCGATATTCTGATTGGGAAATAAAATTAAGGCTGCATTTTGTTCCTGTTGTGGGAGATTACATC
TGGAGCTAATTGTCCATGCTGATGCAAATTG------GTAGCATACAATTTGTACGGGCAAAATTGGTATTTATGTTCAT
TCTCGATTGATGAAGCCTCAGTATTAAGTTAGAAGAGCGAAGCCTATAATTTGTTCCTGTGCCAATTGTGAT---ATTAA
TTGAGGTCAACAGTTTAAAAAGATGGTCACATTTGCATATGCCTTGCTTGATAATTTCTCCTTGAAAAAAATTGAACAAG
GAGCCATGGAGATAGGTTAGTCATGTTAACTTCAGATCTGTAGGTGCGTGGTGAATGAATGAAGCATAATGCGACTGGCG
CAATGCTGCTATGATAGATAAGAGGGCTTTAAGATGCAACTATCATTTACTATTTGTAGTAATGCTCGGGAAAACTGGCA
GCTTTTGATGACATCTTTTCTGACGAAAGGCAGTTTACACTGCTTTCATTGCAAATAGATAGGATAGGAACAGAGTTTTA
CAGCCCAGGCACTAAACCTGAGTGAAATGCTCCCAAAGAAGGAGAAAAGAAAACAAAACA-----AAGGGGGAAACATGC
AATCTTGCATTTAATCAGGCTCACGAGGATGGCCGGCAAGCAGTAGGACACACATCTGGCCAGCCTCAGTCCACATCTGA
GCCTCCATCGGGAGTTTCCGGAACAAAGTGGTGACTGAGCATGAGTGATGCCTGAAGACACATTCATTCCTTTCTTTCCA
GATTGACCACC-ACACGAGCGCCACGATCGATCTCCGGGACTTGGCTGCATCTTGAGTGAGACCCAAGGAGCTAGGGTCG
CACCAAGCAGTCC-GAGTACCATCAGGTTTTGCCGGA
>SNPs
---S----S-----------S-----------------------S------------------S------------S---
-S-----------S------S----------S------------------------------------------------
-----S-----SS---S-------------S------------------------SS-----------------S-----
----------------------------S-----------------S--------S---S-------------------S
-----S--S--------SS----------SS------------S-----------------S------------------
---------S------S----------------S-------------S------------S-------------S-----
----S---------------------------S-S-----S-------S-------S----S------------------
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----------------------------------------S--S----S-SS---------------S------------
-S---S-S-------SS--S--S-----------------------S-------------------S----------S--
----S----------S---S------S---------------------S---S-------------------------S-
--------------------S------S------------------------------------------------S--S
-------------------------------------------------------------S------------------
---------------------SS---------------------------------------------------------
-------------S----------S-S---------S-----------------------S-------------------
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---S-----------------------------S------------------------------------S---------
----------------------------------------------------------------------------SSSS
SSSSSS----------------------S-----------S---------------------------------------
------S------------------------------------------------S------------------------
-------------------------------------------------------S------------------------
-------------------------------------------S------------------------------------
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---------------------S----------------------------------------------------------
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-----------------------------------------------S--------------------------------
------------------------------------------------------------SSSSS---------------
------------------------S----------------------------------------------S--------
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-----------S--------------------------------------------------------------------
-------------S-----------------------
>forward_2051
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-------------------------------TGCATCGGGGTGTATGATCG-----------------------------
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>reverse_3584
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---------------------------------------------------------------CGAAGGGGGAAACAGGC
AAT-----------------------------------------------------------------------------
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