>input_sequence_81103
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-----------------------------------------ATGGCAATCCTCAATAGCAATACAAGGACAATTGTCTAC
ACCGTGGCTGTTGCTCTCTTGGTCGTCATGATGATGTCCTCTTCGTTGCAATCTTGTCATGGAACTGATGAAGGTATGCA
ACAATGTCC------------------------------------------------------------T----------
-----------------------------------------------TGTTTTATCTTTGTATACATGCTAAACTGAATT
GCTGATGCCGC---AATGTAATTCATTTGTAGAGGAGGGTTGGGAGTGCCGTAAATTAGTGAACTGCACTGCTCCGGGAT
GCCTCGCTTATTGCAGACTTATAAAACATGGTGGAGGTTATCCTCACAGTATCATGTCCAAATGCCGTCACAACAGAACG
GAGTGCTGCTGCCGAGACTACAATCAGCCGCCGC---CGCCGCCGGCGTCGCCGCCAAGAGATCTCGTGCTTGTGCACAA
CAACGCTGGTGCATGA----------------------------------------------------------------
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>chr6A_1_TraesCS6A01G007800
TTAGTCCCGGTTGGTTATACAAACCGGGACTAAAGAGGCCCAGCCTGACGCCAGCCTACCACCACCCTTTTAGTCCTGGT
TTGTGACACAAACCAGGACTAGAGGTACGCCACCAACCGGGACTAATGATGCCCACGCCGTAGACATTGGAACAGGGACT
AATGGTCACATTACTACCGAACCGTAAACGAACCGGGACTAATGAGGTGAACGTAAGGTCATTTTTCTACTAGTGCCCCG
ACTCTTCCCCAAGAACTCAATCACCAGCACAGCCCTATTTGAATTTTGAAATAACAAAAGCAGGATATATGTTGTTGTTA
TATATTGAGGTAGTATTGTCCTACTCCCACCGTCCCAAAATAAGTGACTCGACTTTGTACTAAAGTTAGTGCAAAGTTGA
GTCACTTATTTTGAGACGGAGGAAGTATTTAAAGTCTTAAAGCACACACCGTTGATTGTTTCCATTTTTACCTTATTAGT
GCTTGAAAAGGGTAGGACTTTGGAGATAAAATCGATTAATCGTCCGATTTCCGATTAATGTCTATAATATCCGAAACATT
GATTACCACGTAAATTTTTTCCTTATTATAAACACAAGAAATACATTGCACTACGAGAAACATGAAACAGATACATGATA
CAAACGAATATCCCACATTAGTGCTCATATAAATCAAGCATAAACAAATAGGATATGTAACAATTAGTGT-TGGGAAAAA
ATGCTAGATACGCGGAGCCTATGCAAGACTTTTGTGTGTTATTTAATGTGAACATTAATTTAAAGATACGCATAAATGCA
ACAAGGAGCCTATGCAAGACTTTTGTGTGTTATTTAATGTGAACATTAATTTAAAGATACGCATAAATGCAACAAGGAAT
CGATCGATATCCACAACTTGGTGGTGGCTCTATATAAATACCAGCAATGGAGCTTGGCAGCGTGGATCCCATATAGGAGA
AGGAAGAAGCAGGGCAAGTAGAAGTGCTCTCTTCTTGTAGTATGGCAATCCTCAATAGCAATACAAGGACAATTGTCTAC
ACCGTGGCTGTTGCTCTCTTGGTCGTCATGATGATGTCCTCTTCGTTGCAATCTTGTCATGGAACTGATGAAGGTATGCA
ACAATGTCC------------------------------------------------------------T----------
-----------------------------------------------TGTTTTATCTTTGTATACATGCTAAACTGAATT
GCTGATGCCGC---AATGTAATTCATTTGTAGAGGAGGGTTGGGAGTGCCGTAAATTAGTGAACTGCACTGCTCCGGGAT
GCCTCGCTTATTGCAGACTTATAAAACATGGTGGAGGTTATCCTCACAGTATCATGTCCAAATGCCGTCACAACAGAACG
GAGTGCTGCTGCCGAGACTACAATCAGCCGCCGC---CGCCGCCGGCGTCGCCGCCAAGAGATCTCGTGCTTGTGCACAA
CAACGCTGGTGCATGAAGTCGATGCATGTTTTGATGAACCTGCAGTCGGAGCAT------------CCGATGAAAATCAA
ATAAATTTGTTTTAGCTTCATACATACTCCAAGCAAACAAATGTTGTACTTTGAACGACCATGTTCTGTTCGACACCTGA
TTAACAATACTTCCGTAGAACTTCCTCGTATGAA-GTTAGTAGGCCTCTCGGGCTTCTCGCGGCCCGTGTTGCTCCCTGC
CGGCAACGTTGGAGCGAAACCCTACCTACTGGCTAGGCTCCCCTCCACACCGGTCCCCAATCACAGCCGTTGGTCTACGC
TGCCGAGCAAAGACCGCATGGCATTGGCTCGGCGCAAGGTGTGCGGCACTCCCACCCCCACCCTCATGGCGTTGCCTCAG
ATGATAGGTGTGGAGTCACTGATCTTTTAGTTTCTGCTGCGATCATACCCAAGCCCTTATTTCCGGAGATGCTTTCGCTT
CGACGTTTCACCACTTGGTTGAAAACGACCTATGGGCATTCGGGCTCTTGACGCGTGCATTTCTTTGGGATGTGGCGTGG
TAGAAATTATGTGTGGCTGCAGACTCTCAATCAATATTTTCTTAACGTGGGTAGCGATCTTCTTGGTGCGGTTAGCCATT
ATAGGTGTTTGTGGGCCAGCACTGCTGTTGACTTGGGGGCCTAAGATTTCTTCGGATGTCTATGTGCGTTATTGGTCGCC
GCCGCGTGATTGGTCGCCCGCGTGTACGTCTTCCCAGGATCCACGTGCAGTTATGGAGCAATCATACGCGAAATCTTAAA
TCATTCAGCCTCATTTGAATTTTGTACTTTTAGTCATGAATTTAGGATCTCAAACTTCGAAGCTCACAATCTTACAAAGC
ATGCACTCTCTCTTGGAGGTGGCCGCCATGTCTGGTTAGACCATCCCGGAGATCTTCTATCCGTTCCTGTAAACATTGTG
ACGACTTAATAAAGCTTTGCAAGTTTATTTAAAAAAAAGTTGCGATCGCTGTCATAATCGGTGCCCCTT
>chr6A_1
TTTGTCCCAGTTGGTTATACAAACCGGGACTAAAGAGGCCCAGCCTGACGCTAGCCTACCACCACCCCTTTAGTCCTGGT
TTGTGACACAAACCGGGACTAGAGGTACACCACGAACCGGGACTAATGATGACCGCGCCGTAGACGTTGGAACAGGGACT
AATGGTCATATTAGTACCGGGCCGTAAACGAATCGGGACTAATGAGGTGAACGTAAGGTCGGTTTTCTACTAATGCCCCG
ACTCTTCCCCAAGACCTCAATCACCAGCACAACCCTATTTGAATTTTGAAATAACAAAAGCAGGATATATGTTGTTGTTA
TATATTGATGTAGTATTGTCCAGCTCCCACCGTCCCAAAATAAGTGACTCGACTTTGTATTAAAGTTAGTGCAAAGTTGA
GTCACTTATTTTGAGACGGAGGAAGTATTTAAAGTCTTAAAGCACACACCGTTGATTGTTTCCATTTTTACCTTATTAGT
GCTTGAAAAGGGTAGGACTTTGGAGATAAAATCGATTAATCATCCGATTTCCGATTAATGTCTATAATATCCCAAACATT
GATTACCACGGATATTTTTT-CTTATTATAAACACAAGAAATACATTGCACTACGAGAAACATGAAACAGATACATGATA
CAAACGAATATCCCACATTAGTGCTCATATAAATCAAGCATAAACAAATAGGATATGTAACAATTAGTGTGTGGAAATAA
ATGCTAGATACGCGGAGCCTATCCAAGACTTTTGTGTGTTATTTAATGTGAACATTAATTTAA-----------------
------------------------------------------------------AGATACGCATAAATGCAACAAGGAAT
CGAT----ATCCACAACTTGGTGGTGGCCCTATATAAATACCAGCAATGGAGCTTGGCAGCGTGGATCCCATATAGGGGA
AGGAAGAAGCAGGGCAAGTAGAAGTACTCTCTCCTTGTAGTATGGCAATCCTCAATAGCTATACAAGGACGATTGTCTAC
ACCATGGCGGTTGCTCTCTTGGTCGTCATGATGATGTCCTCTTCGCTGCCATCTTGTCATGGAACTGATGAAGGTATGCA
ACAATGTCC------------------------------------------------------------TTGTTTTACTC
TACGATTTCCAAACATGGAAAAACAAAAATCTAGCTAGCTATACTCTTGTTTTATCTTTGTATACAAGCTAAACTGAATT
GCTGATGCCGC---AATGTAATTCATTTGTAGAGGAGGGTTGGGAGTGCCGTCAATTGCTGCACTGCACTGCTCAAGGGT
GCCTCTCTTATTGCAAAGTTTTAAAACATGGTGGAGGTCACGCTTACAGTATCATGTCCAAATGCCGTCACAACAGAACA
GAGTGCTGCTGCCGAGACTACAATCAGCCGCCGC---CGCC---------------AAGAGATCTCGTGCTTGTGCAAAA
CAATGCTGGTGCATGAAATCATTGCATCTTTTGATGAACCTGCAGTCGGAGCATTAATTGATCTATCCGATAAAAATCAA
ATGAACTTGTTTTATCTTCATACATACTCCAAGCAAACAAACGTTGTACTTTGAACAACCATGGTCTGTTCGACACCTGA
TTAACAATACTTTCGTAGAACTTCCTCGTATGAA-GTTATTAGGCCTATCGGGTTTCTCGTGTCCCGTGTTGCTCCCCGC
CGGCAATCTGGGAGCGAAACCCTAACTACTGGCTAGGCTCCCCTCCACACCCGTCGCCTATCGCGGCCGTTGGTCTGCGC
TACCGAGCAAAGACCGCATGGCTTCGGCTCGGCGCGAGGTGCGTGGCACTCCCACCCTCACCCTC---------------
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>chr6B_765
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---------------------------------------------ATGTGAACATTAATTTAA-----------------
------------------------------------------------------AGATACGCATAAATGCAACAAGGAAT
CGATCGATATCCACAACTTGGTGGTGGCTCTATATAAATACCAGCAATGGAGCTTGGCAGCGTGGATCCC--ATAGGGGA
AGGAAGAAGCAAGGCAAGTAGAAGTACTCTCTTGTTGTGGTATGGCAATCCTCAATAGCGATACAAGGACCATTGTCTAC
ACCATGGCGGTTGCTCTCTTGGTCGTCATGATGATGTCCTCTTCGTTGCCATCTTGTCATGGAACTGATGAAGGTATGCA
ACAATGTCCAGCTTGTTTTACTCTACGATTTCCAAACATGGAAAAACAAAAATCTAGCTAACTATATTCT----------
-----------------------------------------------TGTTTTATCTTTGTATACAAGCTAAACTGAATT
GCTATTGCCGCAATAATGTAATTCATTTGTAGAGGAGGGTTGGGAGTGCCGTCAATTACTGCACTGCACTGCTCCGGGGT
GCCTCTCTTATTGCAAAGTTTTAAAACATGGTGAAGGTCATGCTTACAGTATCATGTCCAAATGCCGTCACAACAGAACA
GAGTGCTGCTGCCGAGACTACAATCAGCCGCCGCCGCCGCC---------------AAGAGATCTCGTGCTTGTGCAAAA
CAATGCTGGTGCATGAAGTCGTTGCATGTTTTGATGAACCTGCAGTCGGAGCATTAATTGATCTATCCGATAAAAATCAA
ATAAACTTGTTTTATCTTCATACATACTCCAAGCAAACAAATGTTGTACTTTGAACAACCATGGTCTGTTCGACACCTGA
TTAACAATACTTCCGTAGAACTTCCTCGTATGAAAGTTATTAGGCCTATCGGGCTTCTCGTGTCCCGTGTTGCTCCCCGC
CGGCAACCTGGGAGCGAAGCCCTAGCTACTGGCTAGGCTCCCGTCCACACCCGTCCCCTATCGCGGCCGTTGGTCTGCGC
TGCCGAGCAAAGACCGCATGGCGTTGGCGCGGC-----------------------------------------------
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>SNPs
--S-----S------------------------------------------S---------------S------------
--------------S-------------S----S-----------------S--S----------S--------------
--------S----S-----SS-----------S---------------------------SS----------S-------
--------------S----------------S------------------------------------------------
--------S------------SS------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------------------S------------------------------S-------
----------S-S-------S-----------------------------------------------------------
--------------------------------------------------------------------------S--S--
----------------------S----------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------------------------------------------------------------------------S--
-------------------------S---------------------------------S----------S---------
---S----S----------------------------------------S------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------------S-----S--S----------------S-
-----S---------S-S--S-----------------S--S--S----------------------------------S
-----------------------------------------SSSSSSSSSSSSSSS---------------------S--
---S-----------------S-------------------------------------------------S--------
-----S--------S-----------------------------------------S------S----------------
---------------------------------------S-------S------------S-S--------------S--
-------S-S--------------S--------------------------S------S---S-S-----------S---
----------------------S------------S-----S-S-------------S-------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_816
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----------------------------------------------------------------------------TGCA
ACAAGGAGCCTATGCA----------------------------------------------------------------
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>reverse_1967
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----------------------------------------------ACCCAAGCCCTTATTTCCGG--------------
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