>input_sequence_81069
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----------------------------------------------------------ATGTGCTTACAGTGCTGCTATT
CTCGCCATCTCAAAGTGATCTGGTACCGAATGATGCCCAGTTGTCTGCAGAAGCAAGAGCTTCACGAATGCAGTGAATTA
GGAACAGAAGTGAGACAGCTCACACTTGAAGAACTTCTGTATCCGCAACCAAGCTGGGAAATGGGGGCGACCGAAGGAAC
ACCGGCTCGAAGGTACTCTCCGAAGGTCTGCCCACTGAACTCTGACTTCTCTTCCGAGAGCAACTCACCAATCATCAACG
AGAGCATCTCCATTGGTGGAGTGTCTGTGCGGAGTCAAAACAGTGCCGCAAGGAGAGTTAGCTTTAGATCACCTCATGAA
TATGATGTATTTACCATTCCTGCACGAGATTCAGATGATGATTCCAGTGATGGTGAACCACCCAGGATATGA--------
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>chr7D_1_TraesCS7D01G242000
GGGGGCGGCGGGAGCGGGGGAGGGCGGCGGCGGCGGCGGGGGGAAACCCTAACGAGAGCGGGGCGGAGGGGACGAGGGAG
CGGGGCCAAAAGCAAGGGATATACATGACAAGGAAAAACCCATGGTCAAGATACAACATAATTGTGTCATATCTTACCCT
AAAAAT-ATATGTGTCACATCACAGGTCCATGAAATGTTTCTACATGAATAGCAAGTTGGCAACTCTAAACTGTGTTGAT
GGTGAACTCTGAAAAAGTTATGCCAGCTTTTGCTATAGTGCCAATACAACTTCGTGTTAAAGGAACATGACAATACAAGA
TATGGTGTAAACAACAAGAAGAGTTGCCTAGGTCAAAAAAATTT---ACAAAGGATGGTGTAAACAACAAGAGTGCTTGG
TTTCTGGACAGAGTCATATTTTGAGTTTCTCGTAATCTTCCTAGATGGCAATGGATATCTCCCAAATATATTGGGATTCC
AAGCTCCAACAGAATCAGACAACAGCAGAACTTCCATTTCGTAATATCCGTTGAAAAATATCACTTTCTTATATGCACTG
CTAGCACATT--------CAATAAAGTCCAGACATAGTCTAGGCTACTATAATCCCTCAG------TTAGCAGCCAGAAA
TGATAAATATGATAACTGAAATAACAAGTGCTAGTTTTGAATATATTTTCTAGAACTCCCTACAAATACACCCAACAGCA
AATAATCAACTCCCTAGGCTTCTCTCGGCAGCTATTTAAATAATATAAATTGTTATCTATCAAAAGTTCCAAACTAAGGA
ACCAGTTTGTCTTGAACCCCTCGCCGTATCCCTGTGATATCGATATGCCCAAAGTTTTATTACAGCCTAGTCTATGCATA
ACAACAATTTAATTCCTGAGGGGCATCCAATTAAAGCATGCACGCTTGTCCATAAATACATGTTGGTACGCACTACACAA
TAACACGGGGTGGTCAAATTGATTCACTATCTCATCTCACCATCCTCTAGAGGTAAGAATGTGCTTACAGTGCTGCTATT
CTCGCCATCTCAAAGTGATCTGGTACCGAATGATGCCCAGTTGTCTGCAGAAGCAAGAGCTTCACGAATGCAGTGAATTA
GGAACAGAAGTGAGACAGCTCACACTTGAAGAACTTCTGTATCCGCAACCAAGCTGGGAAATGGGGGCGACCGAAGGAAC
ACCGGCTCGAAGGTACTCTCCGAAGGTCTGCCCACTGAACTCTGACTTCTCTTCCGAGAGCAACTCACCAATCATCAACG
AGAGCATCTCCATTGGTGGAGTGTCTGTGCGGAGTCAAAACAGTGCCGCAAGGAGAGTTAGCTTTAGATCACCTCATGAA
TATGATGTATTTACCATTCCTGCACGAGATTCAGATGATGATTCCAGTGATGGTGAACCACCCAGGATATGAACAGATGA
GGGGTTGATG-------CAGAGGGGATTCATCATGGTACAGCCAGTTTCTGGCAAGATTGCTGTCCTCTGAAGGACTATG
GCGAGAATTATTAGAAGGAAAATCTTGTGGAGTTTGCAAGTGCTTGCTAATCCAGTTCTGTAGAGGACACCGGCACCATG
TAACACAGTAACAGCACAAGAATTATGTAATTGCATACTTGAGGTTTACGAGAAC---ATATATGCAGTACCCGAAATTC
AGAACTATTTACTTTCTTAGCAGGAAAAGGCATATTCATTCTAAAATTGCATCCTTGTAATAGTTTAACTAACGATGACG
CCAACGCGTTATGCAAACTGTATCATGCGTAGGATTGACAAATGAAGAAATGACCCCGTCTGACAGCCGTAGCTATAG--
---GGTGAAGAATACACTTGATAAAGCAATATTGTGTAGTACAGTACTAGCGAACGGGTGTTGGGTGTTCGTACAATTTT
TACTCGGATTTTCAAGCTATCCGTGGGCACGAGCGAACTTTCTGGAGATAGGATACCTTCTTCTGCAGC-------CTGG
CGCGTAAGTGAATGCTTCTATCCCGAATCGGCGTTCAGTGGTGGCGCGGCTCCCCGTCGAGCTCACCCACCACCGAGGGG
TCCAGGGAAGAACCTCCGCTGCCGGCTATTCCTACGCCCCGCCGCCCCGGTTGTGGGTGCCGGAGCTGGTGGAGCATGCC
GCGTGGGGTGG-------TCGAGCGGACAGGGACGGCGGCGAGGGGAGTTTCGCAGAAAACCCTATTTGACGCTCTCTGC
GTCAAACAGTCGACCGATCCCACAGGGGCGCGATAAAGTGGGCCGGACCATCTCCCGCTGTAGGCAGTTCCGGTTTTGGG
AACTTTCTAGAAGTTTCCCAGACGGTTTTTATCCGTTTCTAGAAGCTTCCTAAAGCGGGGTATTTTCCTTTTATTTTCTG
TTTCAGTTTCTTTTTTACTTTTTCATTTCTGTTTTATCTGTTTTGTTTTTGTTTTCTTTTC
>chr7A_88
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-------AAAAGCAAGGGATATACATGACAAGGAAAAACCCACGGTCAAGATACAACATAATTGTGTCGTATCTTACCCT
AAAAAAAATATGTGTCACATCACAGGTCCATGAAATGTTTCTCCATGAATAGCAAGTTGGCAACTCTAAACTGTGTTGAT
GGTGAACTCTGAAAAGGTTATGCCAGCTTTTGCTATAGTGCCAATACAACTTCGTGTCAAAGGAACATGACAATACAAGA
TATGGTGTAAACAACAAGAAGAGTTGCCTAAGTCAAAAAAAATT---ACAAGGGATGGTGTAAACAACAAGAGTGCTTGG
TTTCTGAACAGAGTCATATTTTGAGTTTCTCGTAATCTTCCTAGATGACAATGGATATCCCCCAAACATATTGGGATTCC
AACCTCCAACAGAGTCATACAACAGCAGGACTTCCATTTCGTAATATCCGTTGAAAAATATCACTTTCTTATATGCACTG
CTAGCACATACAATGATACAATAAAGTCCAGACATAGTCTAGGCTACTATAATCCCTCAACCTCAATTGGCAGCAAGAAA
TGGTAAAAATGATAATTGAAGTAACAAGTGCTAGTTTTGAATATATTTTCTAGAACTCCCTACAAATACACCCAACAGCA
AATAATCAACTCACCAGGCTTCTCTCGGCAGCTATTTAAATAATATAAATTGTTACCTACCAAAAGTTCCAAACTAAGGA
ACCGGTTTGTCTTGAACCCCTCACCGTATCCCTGTGATATCGATATGCCCAAAGTTTTATTACAGCCTAGTTTATGCATA
ACAACAATTTAATTCCTGAGGGGCATCCAATTAAAGCATGCACGCTTGTCCATAAATACATGTTGGTACGCACTACACAA
TAACACGGGGTGGACAAATTGATTCACTATCTCATCTCACCATCCTCTAGAGGTAATAATGTGCTTACAGTGCTGCTATT
CTCGCCATCTCAAAGTGATCTGGTACCGAATGATGCCCAGCTGCCTGCAGAAGCAAGAGCTTCACGAATGCAGTGAATTA
GGAACAGAAGTGAGACAGGTCACACTTGAAGAACTTCTGTACCCGCAACCAAGCTGGGGCATGGGGGCGATCGAAGGGAC
ACCAGCTGGAAGGTACTCTCCGAAGGTCTGCCCACTGAACTCCGACTTCTCTTCCGAGGGCAACTCACCAATCATCAACG
AGAGCATCTCCATCGGTGGAGTGTCTGTGAGAAGTCAAAATAGTGCCGCAAGGAGAGTTAGCTTTAGATCACCTCATGAA
TATGATGTATTTATCATTCCTGCAAAAGATTCAGATGATGATTCCAGTGATGGTGAACCACCCAGGATATGAACAGATGA
GGGGTTGATG-------CGGAGGGGATTCATCATGGTACAGCCAGTTTCTAGCAAGATTGCTGCCCTCTGAAGGACTATG
GCGAGAATTATTAGAAGGAAAATCTTGTGGAGTTTACAAGTGCTTGCTAATCCAGTTCTGTAGAGGACACTGGCACCATG
TAACACGGTAACAGCACAAGAATTATGTAATTGCATACTTGAGGTTTACGAGG-------ATATGCACTACCCAAAATTC
AGAATTATTTTCTTTCTTAGCAGGAAAAGGCAAATTCATTCTAAAATTGCATCCTTGTGATAGTTCATCGAATGATGACG
CCAACGAGTTATGCAAACTGTATCATGCGTAGGATTGACAG-TGAAGAAATGACCCCGTCTGACAGCCGTAGCTATAG--
---GGTGAAGAACACACTTGATAAAGCAATATTGTGTAGTACAGTACTAGCGAACGGGTGTTGGGTGTTCCTACAA-TTT
TACTCGGATTTTCAAGCTATCTGTGGGCACGAGTGAATTTTTTGGAGATAGGATACCTTCATCTGCAGTCTGGCGGCTGG
CGCGTAAGTGAATGCTTCCATCCCGGATCGGCGTTCAGTGGTGGCGCGGCTCCCCGTCGGGCTCACCCACCGCCGAGGGG
TCCAGGGAAGAACCTCCGCTGCCGGCTATTCCTACGCCCCGCCGCCCTGGTTGTGGGTGCCGGAGCTGCTGGAGCATGCC
GCGTGGGGGTGGTCGAGCTCGAGCGGACAGGGACGGCGGCGAGGGGAGGTTTCGC-------------------------
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>chr7B_88
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-------AAAAGCAAGGAATATGCATGACAAGGAAAAACCCACGGTCAAGATACAACATAATTGTGTCATATCTTACCCT
AAAAAAGAA--GTGTCATATCACAGGTCCATGGAATGTTTCTCCATTAATAGCAAGTTGGCAACTCTAAAGTGTGTTGAT
GGTGAGCTTTGAAAAAGTTATGCCAGCTTTTGCTATAGTGCCAATACAACTTCGTGTCAAAGGAACATGACAATACAAGA
TATGGTGTAAACAACAAGAAGAGTTGCCTAAGTCAAAAAAAAAAAAAACAAGGGATGGTGTAAACAACAAGAGTGCTTGG
TTTCCGAACAGAGTCATATTTTGAGTTTCTCGTAATCTTCCTAGATGGCAATGGATATCCACCAAATATATTGGGATTCC
AAGCTCCAACAGAATCAGACAACAGCAGAACTTCCATTCCGTAATATCCGTTGAAAAATATCACTTTCTTATATGCACTG
CTAGCACATG--------CAATAAAGTCCAGACATAGTCTAGGCTACTATAATCCCTCAG------TTGGCAGCCAGAAA
TGATAAAAATGATAATTGAAGTAACAAGTGCTAGTTTCAAATATATTTTCTAGAACT-CCTACAAATACACCCAACAGCA
AATAATCAACTCCCCAAGCTTCTCTCGGCAGCTATTTAAATAATATAAATTGTTATCTATCAAAAGTTCCAAAGTAAGGA
ACCGGTTTGTCTTGAACCCCTCACCGTATCCCTGCGATATCGATATGCCCAAAGTTTTATTACAGCCTAGTCTATGCATA
ATAACAATTTAATTCCTGAGGGGCAGCCAATTAAAGCATGCACGCTTGTCCATAAATACATGTTGGTACGCACTACACAA
TAACACGGGGTGGTCAAATTGATTCACTATCTCATCTCACCATCCTCTAGAGGTAAGAATGTGCTTACAGTGCTGCTATT
CTCGCCATCTCAAAGTGATCTGGTACCGAATGATGCCCAGCTGCCTGCAGAAGCAAGAGCTTCATGAATGCAGTGAATTA
GGAACAGAAGTGAGACAGGTCACACTTGAAGAACTTCTGTACCCGCAACCAAGCTGGGAAATGGGGGCGATCGAAGGGAC
ACCAGCTCGAAGGTACTCTCCGAAGGTCTGCCCACTGAACTCTGACTTCTCTTCCGAGAGCAACTCGCCAATCATCAAGG
AAAGCATCTCCATCGGTGGAGTGTCTGTGCGAAGTCAAAACAGTGCCGCGAGGAGAGTTAGCTTTAGATCACCTCATGAA
TATGATGTATTTATCATTCCTGCACGAGATTCAGATGATGATTCCAGTGATGGTGAACCACCCAGGATATGAACAGATGA
GGGGTTGATGCAGACTGCAGAGGGGATTCATGATGGTACAGCCAGTTTCTGGCAAGATTGCTGTCCTCTGAAGGACTATG
GCGAGAATTATTAGAAGGAAAATCTTGTAGAGTTTACAAGTGCTTGCTAATCCAGTTCTGTAGAGGACACCGGCATCATG
TAACACAGTAACAGCACAAGAATTATGTAATTGCATACTTGAGGTTTACGAGGAGAATATATATGCAGTACCCGAAATTC
AGAACCATTTACTTTCTTAGCAGGAAAAGGCATATTCATTCTAAAAGTGCATCCTTGTAATAGTTTAACTAATGATGACG
CCAACGCATTATGCAAACTGTATCATGCGTAGAATTGACA-ATGAAGAAATGACCCCGTCTGACAGCCGTAGCTATAGTA
TAGGGTGAAGAATACACTTGATAAAGCT-----------TACAGTACTAGCGAACGGGTGTTGGGTGTTCCTACAA-TTT
TACTCGGATTTTCAAGCTATCCGTGGGCACGAGCGAACTTTTTGGAGACAGGATACCTTCATCTGCAGCCTGGCGACTGG
CGCGTAAGTGAATGCTTCCATCCCGAATCGGCGTTCAGTGGTGGCGCGGCTCCCCGTCGGGCTCACCCACCACCGAGGGG
TCCAGGGAAGAACATCCGCTGCCGGCTATTCCTACACCCCGCCGCCACGGTTGTGGGTGCCGGAGCTGGTGGAGCATGCC
GCGTGGGGGTGGTCGAGCGGATCAGGGACG--------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----------------------------------S-------------------------------------
-----S------------------------------------S-------------------------------------
---------------------------------------------------------S----------------------
------------------------------S----------S---------S----------------------------
------S----------------------------------------------------S--------------------
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---------S----------------------------------------------------------S-----------
-------S-------S----S-----------------------------------------------------------
--------------S-----------------------------------------------------------------
---S------------------S---------------------------------------------------------
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----------------------------------------S--S------------------------------------
------------------S----------------------S----------------------------S------S--
---S----------------------------------------------------------------------------
-------------S-----------------S------------------------------------------------
-------------S------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
----------------------------------------------------S-S-------------------------
------------------------------------------------------------------------S-------
----------------------------------------S---------------------------------------
----------------------------------------------------------------------S-----S---
-----------------------------------------S------------------S-------------------
------------------S----------------------------------------S--------------------
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--------SS--------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_61
-----------------------------------------GGAAACCCTAACGAGAGCGG-------------------
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>reverse_1312
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-------------------------------GAGTCAAAACAGTGCCGCAA-----------------------------
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>forward_1084
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------------------------ACCGAATGATGCCCAGTTGT------------------------------------
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>reverse_2244
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---AAACAGTCGACCGATCCCAC---------------------------------------------------------
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