>input_sequence_81031
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-----------------------ATGAACTTCCACGACGTCCACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGAGCGTGCGGAGCACGCTGAGCGGCAGCGCCGTCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGCGCTACCCGGAGGATGTCACCTACGAGCAAGCCTACTGGGCAAGGCGCCGCAAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTGGCGTTATCGCAGTGCGACATCGTTGAGAA
TGGTGGGCAGATGATCTTTACTTCTGATGATGATCGTTGGGACGACATGTGGCTAGATACCTCGGACCAGACCAGCGAGG
ATGGCGACGATGA---CGATGACGACAACGACTGGGCGTAG---------------------------------------
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>chr5D_1_TraesCS5D01G108900
TCTGACTACTCGCTAGCCACGTACTCCTACTACGGAGCGATCGCTCCTACGGTAGCATATATATACATGGGGAGAGAGGT
GGGGTGGGAAACCCTCAACATGCAACGCGTACAGACGTCCTCGCTG-----TCAGTTATACTAACTCAAACCAGGCAGCT
GTCAACCATGGCAGGACATCTCCAACAGTTTTAAGATAGTGTTGCGTTCATGGCATGCATGGAGGTGGAACTAGCCTCGG
ACGGTGGAATAGATTACTGGCAGCAATAATTTTTAAATTGGCTTGCGACTCTGTACCTCCGTAATCCTCCAGCTTGTTCA
CGTTGCCGCATCTATGTGAGTCATCTCTGAGATCGCATGCACTTCTCGCACAAAACAATGGAACTTGCACATCACAAGGT
CGGTACGGGAGGTCAAGGACAGTTCAGCGTTAGGGTATGAGTGTACA-ACAACAATACTTATATGGCGTGCATATATATG
GATAGCGTCATT-GCGTGCATGGCAGCAGTCAAACCATGGCATCTCCAACAGTTAGAGCATCTCCAACAGTCGCGCATCG
GTAAACCGAGTTTTTAGCGCGCGCGGGACGATTCGGCGCGCTCTAGCGATGGCGGGAAAGTCG--CGC--GCGGGAACCG
TTTGCGCGCGCG---------------------CGGGAAAAGGCGGCAGGTCGCGCGCTATTTTTGGCGCACCGCTTCCG
GCGCGCCTATAAATTGCGGCGCTCGTCACGCGCCTATTCCGCACACTTCTCTTCCTCTTCCGCTGCCACGCACGCCTCCA
CCG-CTTCCTCGGTTGCTTCCGCTGCCACGCGT------------------------GCCACCGACGCGCCACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCGAGATACGGCCCGG
------CAAACTCCGGCTCGGCCTCGGCACCTTCCAGACGGCGCAAGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCACGCAGATGAACTTCCACGACGTCCACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGAGCGTGCGGAGCACGCTGAGCGGCAGCGCCGTCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGCGCTACCCGGAGGATGTCACCTACGAGCAAGCCTACTGGGCAAGGCGCCGCAAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTGGCGTTATCGCAGTGCGACATCGTTGAGAA
TGGTGGGCAGATGATCTTTACTTCTGATGATGATCGTTGGGACGACATGTGGCTAGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---CGATGACGATGACGACAACGACTGGGCGTAGGCTGTAGTTGCGTATGTAGTTGCACTATATAGTAGTTTT
TATCTATGTCGTTGCACTATCTAG-TAG-----TTTTTATCTATCTATGTTATGGAACTGTGTAAAATATCTATGTATCG
--TTTTTTCTATCTAT-GAATTTTA-TTTATCGTTTATTAA-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCGCTGGAGCT--ACGCGCGCGCGCTCAATTTTGACACGTCTGCTGGAGGCAGCGCT----ACCGGCCGCGCCAA
ACCAGGCAAACGGCGCGCGGCAAATGCGTTTTTTGCGCGCGGCGCGTTGCGCGGCTGTTGGAGATGCTCTAATAAGCTAC
TATAGCGTTCATGACGTGCATGGAGGTGGAACTAGACTCGCATACATGTGTGGCACTTAGAGCAACTCTAATGAGGTGAC
CCATTTTGTCCGTTTAGGTCATCCGAC--CAAAACTTGGCCCAACAAGGCGACCAAAACGGGCATAGCGTTCGTCTGCTA
TTCGTTTTGTGTTCGCTTGGACTCATATCTAGCTTAAATTTGGGTCACATTTGATCCGCGG------------CGGACGT
TTTCTATGGTCTCCTCGTTCGCCTCCGTCCGCTGCATGCGGGCACTGGCCCATCTGTCAGCGAGAGGCCACCTACCCATT
CCACCCCCGTCTCT----CTCTTTTTCTTTCTTTCTCCCATCCACCCCACAGCGGCCCGCCACCGGCCGCTTTGGCCTCC
GTTGCGAGCTAGCAGGCAGCACGGGCTGCTTGTTGGAGCCGCACCCGTGCTAGCTAGCTAGCTAGCCGCCGGCCGAGCTG
TATGTCGCGGGTGCTAGCTAGCTAGC--------CACCGGCCGAGTTGCCCGCCGTGCCGCCGCAACCACACAGGACGAC
GCCGCGACTGCACAGAGACGACGCCAGCCTCGCCTCCCCCCGCGCTCGCCCTCGGCATCGCCTCCCCGCGCCGCCGCTCG
CCCTGCCCCACGCTCGCCTCGCCCGCGCTCGTCCTGGCCTCGCC
>chr5A_1
TCTGACTACTCGCTAGCCACGTACTCCTACTACGGAGCGGTCGCTCCTACGGTAGTATATATAC----GGAGAGAGAGGT
GGGGTGGGGAAGCCTCAACATGCAACGCGTACAGACGTCCTCGCTGCGCTGTCAGTTATACTAACTCAAACCAGGCAACT
GTCAACCATGGCAGGACATCTCCAGCAGTTTTACGATAGTGTTGCGTTCATGGCGTGCATGGAGGTGGAACTAGCCTCGG
ACGGTGGAATAGATTACTGGCAGCGATAATTTTTAAATTGGCTCGCGACTCTGTACCTCCGTAATCCTCCAGCTTGTTCA
CGTTGCCGTATCTCTTCAAGTCAACTATGAGATCGCATGCACTTCTCGCACAAAACAACGGAACTTGCACATCACAAGGT
CGCTAATGGAGGTTAAGGACAGTTCAGCGTTAGGGTATGAGCGTACAAACAACAATACTTATATGGCGTGCATATATATA
GATAGCGTTCATGGCGTGCATGGCAGTAGTCAAATCATGGCATCTCCAACAGTTA-------------------------
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>chr3A_537
CCAAAAGGCGCGCGCG----------------------------------------------------------------
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------------------------------------------------------------------------------CG
GTAAACTAAGTTTTTAGCGCGCGTGGGACGTTTCGGCGCGCTCCAGCGGTGGCGGGAAGCTAG--CGCGTGCGGGAATCA
TTTGCGCGTGTG---------------------CGGGAAAAGGCGGCAGCTCGCGCGCTATTTTTGGCGCACCGCTTCCA
GCGCGCCTTTAAATTGCGGCGCTCGCCACGCGCCTATTCCACACTC-TCTCTTCCTCTTCCGCTGCCACGCGTGCCCCCC
CCCACTTCCTCGTT-GCTTCCTCG----------------CCGCTCCAGCGCCCC--ACCACCGACGCGCCACCATGCTG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCACCAGCGCCCCAACGGCTCGTACTACGCCGAGATCCGGTCCGG
------CGACGTCCGGCTCGGCCTCGGCACCTTCTGGACTGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCATGGC
GCCTAGACAGGCCGCGCGCGCAGATGAACTTCCAGGACATCCACTCGCGACAGCAGGCGCAGGACGTCGCCCCTCCGCCT
CGTCTTATCACGGACCAGGACCGTGCGGAGCACGCTCAGCTGTAGCGCCGCCTCCTCATCGCCGAGGAGGACGAGCGGG-
CCATGGCGGAGTGGCGCCGGCGCCATCCGGAGGACGTCACCGATGAGCAAGCCTACTGGAC------------GAAGCAG
ACGGAAAAGCGTCGCAAGGAACGGTTGGACAGGCGTCGGCGAAAGGCCCTGGCGTTATCGCAGTGCGATATCGTTGAAAA
TGGTGGGCAGTCGATCTTTACAGATAATGATCCTTGTTGGGACGACATGTGACTCGATACCTCGGACCAGACGAGCGAGG
ATGACGATGATGATGATGATGATGATGACGATTGGGAGTAGGTTGTAGTTT--TATCTAGTTGCACTATCTAGTAGTTTT
TT---ATGTCGTTGCAC---------------------------------------------------------------
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>chr3A_539
AAAAGT-----GCGCG----------------------------------------------------------------
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------------------------------------------------------------------------------CG
GTAAACCGAGTCTTTTGGGCGCGCGGGACGTTTCGGCGCGCTCCAGCGGTGGCGGAAAAATCG--CGCAAGCGGGAACGG
TT--CGCGCGCG---------------------CGTGAAAAGGCGGCAGGTCGCGCG-TTTTTTTGGCGCACCGCTTCCG
GCGCGCCTATAAAATGCGGCGCTCGCCACACGCCTATTTCACACGCTTCTCTTCCTCTTCCGTTGCCACGCGCCCCTCCA
CCG-CTTCCTCGGTTGCTTCCGCTGCCACGCGCG---CCACCGCTCCAGCGCCC-------------CGCCATCATGGCG
CCGCGCCGCCGAGGAGTGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCGGAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTTGGCACCTTCGAGACGGCGCACGAGGCCACCCGCGCGTACAACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCAGCAGATGAACTTCCATGATGTCCACACGCTGCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACCGTGCGTATCACGCTGACCGGCAGAACCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGTCAACAACACTCGGAGGATGTCTCCTACGAGCAAGCCTACTATGCAAGGCGCTGCGAGGAGGAG
ACGCAAAGGCGCCGCGCTGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTGGCGCTATCCCAGTGCGATGTCGTTGAGAA
TGGTGGTGAGACGATCTTTACGTCTGATGCTGATCATTGGAAAGACATGTGACTCGATACCTCGGATCAGACCAGCGAGG
ATGGCGA---AGATGACGATGACGACGACGACTGGGAGTAGGCTGTTGCTGCA----------------CTAGTAGTTTT
TATCTATGTCCTTGCACTATCTAAATAA-----TTTTTATCTATCTATGCTATGAAACTATGTAAAATATCTATGTATCA
--TTTTTTCTATCTAT-GAATTTTA-TTA----------AA-AAAAATGTACGCACTGTTTAA-----------------
CGCGGCCGCTGGAGTT--ACGCGCGCGCGTTTAATTTTGGCGCGTCTCCTGGAGCCATCACT----GCCGGCCGCGCCAA
ACCAGGCGAACGGCGCGCGGCAAATGCCTTTTTTACGCGCTGCGCGTTGCGCGGCTGTTGGAGATGCTCTAA--------
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--------------------------------------------
>chr5D_545
----------CGCGCG----------------------------------------------------------------
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------------------------------------------------------------------------------CG
GTAAACCGAGTTTTTTGGGCGCGCGGGACGTTTCGGCGCGCTTCAGCGGTGGTGGGAAAGTCG--CGCGCGCGGGAACGG
TTTGCGCGCGCG---------------------CGGGAAAAGGCGGCAGGTCGCGCGCTTTTTTTGGCGCACCGCTTCCG
GCGCGCCTATAAAATGCGGCGCTCGCCACGCGCCTATTCCACACGCTTCTCTTCCTCTTCCGTTGCCACGCGCGCCTCCA
CCG-CTTCCTCGGTTGCTTCCGCTGCCACGCGCG---CCACCGCTCCAGCGCCC-------------CGCCACCATGCCG
CCGCGCCGCCAAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGTGCCCCAACGGCGGGTTCTACTCGAAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTCGGCACCTTCGAGACGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGT
GCCTAGGCAGGCCGCGCCAGCAGATGAACTTCCACGACGTCCACATGCTGCAACAGGCGCTGGACGTTGCCCCGCCGCCT
CGTCTTCGCACGGCGCAAGACCGTGCGTATCACTCTGAGCGGCAGAACCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGCAACACCCGGAGGACGTCTCCTACGAGCAAGTCTACTGGGCAAGGCGCCGCGAGGAGGAG
ACGCAAATGCGCCGCGCTGAGCGGTTGGACAGGCGTCGGCGGAAGACCCTGGCGCTATTCCAGTGTGATGTCGTTGAGAA
TGGTGGTGAGACGATCTTTGCGTCTGATGATGATCATTGGGAAGACATGTGGCTCGATACCTCGGATTAGACCAGCGAGG
ATGGCGA---CGATGACGATGACGACGACAACTGGGTGTAGGCTGTAGCTGCA----------------CTAGTAGTTTT
TATCTATGTCCTTGCACTATCTAAATAG-----TTTTTATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCG
--TTTTTT-TATCTAT-GAATTTTATT-------------A-AAAAACTTACGCACTGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCGATGGAGCT--ACGCGCGCGCGCTCAATTTTAACGCGTCTGCTGGAGCCACCGCT----GCCGGCCGCGCCAA
ACCAAGCGAACGGCGCGCGGCAAATGCCTTTTTTGCGCGCGGCGCGTTGCGCGGCTGTTGGAGATGCTCTTAATA-----
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--------------------------------------------
>chr6D_545
----------CGCGCG----------------------------------------------------------------
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------------------------------------------------------------------------------TG
ATAAACCCAGTTTTTAGCGCGCGCGGGACGTTTTGGCGCGCTTCAGCGGTGGTGGGAAAGTCG--CACACGTGGAAACCG
TT--TGCGCGCG---------------------CGAGAAAAGGCGACAACTTGCACGCT-ATTTTGGCGCACCGCTTCCG
GCGCTCCTTTAAATTGCGGCGCTCGCCACGCGCCTATTCCACACACTTCTCTTCCTCTTCCACTGCCACGCGCGCCTCCA
CCG-CTTCCTCGTTTGCTTCCGCTGATACGCGCG---CCACCGCTCCAGCGCCCC--GCCACCGACGCGCTACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCGAGATAGGTCCAGC
CGAGGCCGAGCTCTGGCTCGGCCTCGGCACCTTCGAGACGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCCGCAGATAAACTTCCAGGACGTGGACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTACCACGGCACAAGACCGTGCGAAGCACGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCTAGGAGGACGAGCGGG-
TCATGGCGGACTGGCGCCGGCGCCATCCGGAGGACGTCACCTACGAGCAAGCCTACTGGGCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCGCGAGGAGCGGTTGGACACGCGTCGGCGGAAGGCCCTGGCGTTATCGCAGTGCGAAATCATTGAGAA
TGGTGGGCAGACGATCTTTACGTCTGATGATGATCGTTGGCAGGACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGATGACGACGACTGG-AGTAGGCTGTAGTTGCGTATGTAGTTGCACTATCTAGTAGTTTT
TT-TTATGTCGTTGCATTATCTAG-TAG-----TTTTTATCTATCTATGGTATGGAACTATGTAAAATATCTATGTATCA
--TTTTTTCTATCTAT-GAATTTTA-TTATCGTTTTATTAA-AAAAATATACGCAATGTTTACCGCGCGCTGCATTTTAG
CACGGCCGCTGGAGCT--ACGCGCGCGCTCTCAATTTTGACGCGGCTGCTGGAGCCAGCGCT----GCCGGCCGCGCCAA
ACCAGGCGAACGGCGCGCGGCAAATACGTCTTTTGCGCGCGGCGCGTTGCACGACTGTTGGAGATGCTCT----------
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>chr4D_545
----------CGCGCA----------------------------------------------------------------
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------------------------------------------------------------------------------CG
GTAAACCGAGTTTTTAGCGCGCGAGAGACGTTTCGGCGAGCTCCAGCGGTGGCGGGAAACTCG--CGC--GCGGGAACTG
TT--TGCGTGCG---------------------CGGGAAAAGGCGGCAGCTCGCGCGCTATTTTTGGCGCACCGCTTCCG
GCGCGCCTTTAAATTGCGGCGCTCGCCACGCGCCTATTCCACACACTTCTCTTCCTCTTCCGCTGCCACGCCCGCCTCCA
TCG-CTTCCTCGTT-GCTTCCGCTGCCACGCGCGCCTCCACCGCTCCAGCGCCCC--GCCACCGACGTGCCACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGTGCCCCAACGACGGGTACTACTCGGAGATACGGTCCGG
------CGAACTCCGGCTCGGCCTCGGCACCTTCGAGATGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCCGCAGATGAACTTCTAGGACGTCTACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTATCACGGCACAAGACCATGCAGAGCACGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCAGGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCGGCGCCACCCGGAGGACGTCACCCATGAGCAAGCCTACTGGGCAAGGC--------------
----------GCCGCGAGGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTGGTGATATGGCAGTGCGAAATCGTTCAGAA
TAGTGGGCAGACGATCTTTACGTCTAATGATGATCGTTGGGAGGACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGGTGACGACGACTGAGAGTAGGCTGTAGTTGCA----------------CTATCTAGTAG
T--TTATGTCGTTGCGCCGTAGT----------TTTTTATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCG
--TTTTTT-TATCTAT-GAATTTTATCTATTGTTTTATTAA-AAAAATGTACGTAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGGCGCTGAAGCT--AC--GCGCGCGTTCAATTTTGACGCGGCTGCTGGAGCCAGCGCT----GCCGGCCGCGTCAA
ACCAGGTGAACGGCACGCGGCAAATGAGTGTTTAGCACGCGGCGCGTTACGCGGCTGTTGAAGATGCTCTAA--------
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>chr3A_552
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------CG
GTAAACCGTGTCTTTTAGGCGCGTGGGACGTTTCGGCGCGCTCCAGCGGTGGCAGGAAAATCA-----------------
------CGCGCGCGGGAACGGTTTGCGCGCGTGCGGAAAAAGGCGGCAGGTTGCGCGCTTATTTTGGCGCACCGCTTCCA
GCGCGCCTATAAAATGCGGCGCGCGCCACACGCCTATTGCACACATTTCTCTTCCTTTTCCGTTGCCACACGCCCCTCCA
CCG-CTTCCTCGGTTGCTTCCGCTGCCACCCGCG---CCACCGCTCCAGCGCCCC--G-----------CCACCATGTCG
CCGCGCCGCCGAGGAGTGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCGGAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTCGGCTCCTTCGAGACGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCAGTAGATGAACTTCCACGATGTCCACACGCTGCAGCAGGCGCTGGACGTTGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACTGTGCGGAGCACGCTAAGCGGCGGAACCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAATAACACCCGGAGGACGTCTCCTACGAGCAAGGCTACTGGGCAAGGCACCGCGAGGAGGAG
ACGCAAAGGCGCCACACTGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTAGCGCTATCCCAGTGCGATATAGTTGAGAA
TGGTGGTGAGACAATCTTTACATCTGATGATGATCATTGGGAAGACATGTGGCTCGATACCTCGGATCAGACCAGTGAGG
ATGACGA---CGATGACGATGATGACGATGACTGGGAGTAGGCTGTAGCTGCA----------------CTAGTAGTTTT
TATCTATGTCCTTGCACTATCTAAATAA-----TTTTTATCTATCTATGCTATGGAACTACGTAAAATATCTATCTATCA
--TTTTTC-TATCTAT-GAATTTTA------------TTAA-AAAAATGTACGCACTGTTTAGCACGCGCTGCATTTTAG
CGTGGTCACTGGAGCT--AC--GCGCGCGCTCAATTTTGACGCGTCTGCTGGAGCCACCGCT----GTCGGCCGCGCCAA
ACCAGGCGAACGGCGCGCGGC-----------------------------------------------------------
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>chr5D_553
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
GTAAACCGAGTTTTTAGCGCGCGTGGGACGTTTCGGCGCGCTCCAGCGGTGGCGGGAAAGTCGTGCGC--ACGGGAACAG
TT--TGCGCGCG---------------------CGCGAAAAGGCGGCAGGTCGCGCGCTATTTTTGGCGTATCGCTTCCG
GCGCGCCTATAAAATGCGGCGCTCGCCACGCGTCTATTCCACACACTTCTCTTCCTCTTCCGCTGCCACGCGCGCCTCCA
CCG-CTTTCTCGGTTGCTTCCGCTGCCACGCGCG---CCACCGCTCCAGCGCCCC--GCCACCGACGCGCCACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGCGCCC-AACGGCGGGTTCTACGCCGAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTCGGCACCTTCGAGACGGCGCACGAGGCCGCCTGCGCGTACGACGCCGCGGCGTGGC
GCCTAGGCAGGCCGTGCCCGCAGAAGAACTTCCACGACGTCCACACCCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACCGTGCGGAGCATGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGA-
CCATGGCGGAGTGGCGCCGACGCCACCCGGAGGACGTCACCTACGAGCAAGCCTACTGGGCAAGGCGCCGCGAGGA---C
ACACAAAGGCGCCGCGACGAGCGGTTGGATAGGCGTCGGCGAAAGGCTCTAGCGATATCGCAGGGCGACATCGTTCAAAA
TGGTGGGAAGTCGATCTTTTCGGCTGATGATGACCGTTGGTTGGACATGTGGATCGATACCTCGGACCAGACCAGCGAGG
ATGGCGG---CGATGACGAT------GACGACTGGGAGTAGGCTGTAGTTGCGTATGTAGTTGCACCATCTAGTAGTTTT
TTTTTATGTCGTTGCACTATTTAG-TAGTAGTTTTTCTATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCG
T-TTTTTT-TATCTAT-GAATTTTATTTATCATTTTATTAA-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
TGCGGCCGCTGGAGCT--ACGCACGCGCGCTCAATTTTGACGCATCTGCTGAAGCCACCGCT----GTCGGCCGCGCCAA
ACCAGGCGAACGGCGCGCGCCAAATGCGTTTTTTGCGCGCGGCGCGTTGCGCGGCTGTTGGAGATGCTCT----------
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>chr3A_553
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GTAAATCGAGTTTTAAGCGTGCGCAGGATGTTTCGGCGCACTTCAGCGGTGGCGGGAAAGTCGTGCGC----GGGAACCA
TTTGCGCGCGCG---------------------AGAGAAAAAGCGGCAGCTCGCACGCTATTTTTGACGCACCGCTTCCG
GGGCGCCTGTAAATTGCGCCGCTCGCCACGCGCCTATTCCACACACTTTTTTTTCTCTTCCGCTGCCACGCGCGCCTCCA
CCG-CTTCCTCGTTTGCTTCTGCTGCCACGCGCG---CCACCGCTCCAGCGCCCCCCGCCACCGACGCGCTACCATGCCG
CCGCGCCACCGAGGAGCGTCGGGCTACCGCGGTGTCCGTCAGCGCCCCAACGACGGGTTCTACTCCGAGATACGGTCCGG
------CGAACTCCGGCTCGGCTTTGGCACCTTCGAGACGACGCACGAGGCCGCCCGCGCGTACAACGCGGCGGCGTGGC
GCCTAGGAAGGCCGTGCCCGCATATGAACTTCCACGACGTCCACACGCTCCAGCAGACGCTGGGCGTCGCCCCACCGCTT
CGTCTTCGCACGGCACAAGATCGTGCGGAGCACGCTGAGCGGCAGCGCCGCCTCTTCGTCGCCCATGAGGATGAGCGGG-
TCATGGCAGAGTGGCGCCAACGCCATCCGGATGACGTCACCTACGAGCAAGCCTACTGGGCAAGGCGATGCGAGGAGGAG
ACGCAAAGGCCCCGCGATGAGCGGTTGGACAGGCGTCAGCGGAAGGTCCTGGCGTTATCGCAGTGTGAAATCGTTGAGAA
TGGTGGGCAGACGATATTTACGTCTGATGATGATTGTTGGGACGACATGTGGCTCGATACCTCGAACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGACGACGACGACCGGGAGTAGGCTGTAGCTATGTATGTAGTTGCATTCTAGTAG---TTT
TTTTTATGTCATTGCACTATCTAG-TAG-----TTTTTATTTATCTATGCTATGAAATTATGTAAAATATCTATGTATCA
T-TTTC-T-TATCTAT-AAATTTTATTTACCGTTTTGTTAA-AAAAATATACGCAATGTTTAGCGCGCGTTGTATTTTAG
CGCCGCCGCTGAAGCTACAC--ACGCGCTCTCAATTTTGATGCGGCTGCTGAAGCCAGCGCT----GTCGACCGCGTCAA
GCCAGGTGAACGACGCACGGCAAATGC-TTTTTTGCGCGCGGCGCGTTGCGTGGCCGTTGGTGATGCTCT----------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr6A_555
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-TAAACCGAGATTTTAGCGCGGGCGGGACGTTTCGGCGCGCTCCAGCGGTGGCGGGAAAGTCA-----------------
------CGCGCG---------------------GGGGAAAAGGCGGCAGGTCGCGCGTTATTTTTGGCGCACCGCTTTTG
GCGCGCCTATAAAATGCGGCGCTCGCCGCACGCCTATCCCACACACTTCTCTTTCTCTTTCGCTGCCACGCGCGCCTCCA
CCA-CTTCATCGGTTGCTTCCGTTGCCATGCGCG---CCACCGCTCCAGTGCCTC--GCCACCGACGCGTCACCATGCTG
CCGCGCCGCCGAGAAGCTTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCGAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTCGGCACCTTTGAGACAGCGCACGAGGCCGCCCGCGCGTACGACGTGGCGGCGTGGC
GCCTAGACAGGCCCCGCCAGTAGATGAACTTCCACGATGTCCACACGCTCCAGCAGGCGTTGGACGTCGCCCCGCCACCT
CGTCTTCACACGGCACAAGACCATGTGGAGCATGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGGG
TCATGGCGGAGTGGCTCCAGCGCCACCCGGAGGACATCACCTACGAGCAAGCCTACTAGGCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCAGTTGGACAGGCATCGGCGAAAGGCCCTGGCACTATCATAGTGCGAAATCGTTGAGAA
TGGTGGTCAGACGATCTTTACGTCGGATGATGATCGTTGGGACGACATGTGGCTCAATACCTCGGACCAGACCAGCGAGG
ATGGCGA---CGATGACGAGGACGACGACGACTGGGAGTACGCTGTAGTTGCGTATGTAGTTGCACTATCTAGTAGTTTT
TATCTATGTCCTTGCACTATCTAG-TAG-----TTTTTATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCG
T-TTTTTC-TATCTAT-GAATTTTATTTATCGTTTTATT-A-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCACTGGAGCT--AC--GCGCGTGCTCAATTTTGACGCGTCTGCTTGAGCTAGCGCT----GCCGGCCGCGCCAA
ACCAGGCGAACGACGCACTGCAAATGTGTTTTTTGCGCGCGG--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr7D_634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----CGCGCGCG---------------------CGGGGAAAGGCGGCAACTCGCGCGCTATTTTCGGCGCACCGCTTCCG
GCGCGCCTTTAAATTGCGGCGCTCGGCACGCGTCCATACCACGCACTTCTCTTCCTCTTCCGTTGCCACGCGCGCCTCCA
CCG-CTTCCTCGTTTGCTTCCGCTGCCACGCGCG---CCACCGCTCCAGCGCCCC--GCCACCGACGCGCCACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGCCCGCCAGCGCCCCAACGACGGGTTCTACTCCGAGATACGGTCCGG
------CGAACTCCGGCTCGACCTCGGCACCTTCGAGACGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCACGCCCGCAGATGAACTTCCACGACGTCCACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACCGTGCGGAGCACGCTGAGTGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGTGCCACCCGGAGGACGTCACCTACGAGCAAGCCTACCGGGCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCACGATGAGCGGTTGGACAGGCGTCGGCGGAAGGCCCTGACGTTATCGCAGTGCGAAATCGTTGAGAA
TGGTGGGCAGACGATCTTTACATCTGATGATGATCGTTGGGACAACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGACGACGACGACTGGGAGTATGCTGTAGTTGCGTATGTAGTTGCACTATCTAGTATTTTT
T--TTATGTCGCTGCACTATCTAA-TAG-----TTTTTATCTATCTATGCTATGGAACTATGTAAAATATATATGTATCG
T-TTTTTC-TATCTAT-GAATTTTATTTATTGTTTTATT-AGAAAAATGTACGCAGTGTTTAGCGCGTGCTGCATTTTAG
CGCGCCCGCTGGAGCTACAC--GCGCGCGCTCAATTTTGACGTGGCTGCTGGAGCCAGCGCT----GCCGGCCGCGTCAA
ATCAGGCGAACGGCGCACGGCAAATGCATTTTTTGTACGCGGCGCGTTGCGCGGCTGTTGGATGCTCT------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr1D_745
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--------------------------------------------------------CTTCCGCTGCCACGCGCGCCTCCA
CCG-CTTCCTCGGTTGATTCCGCTGCCACGCGCG---CCACCGCTCCAGCGCCCC--GCCACCGACGCGCCACCATGCCG
CCGCGTCGCCGAGGAGCGTCGGGCTACCACGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCGAGATACGGTCCGG
------CCAACTCCGGCTCGGCCTCGGCACCTTCAAGACAGCGCACAAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCAGCAGATGAACTTCCACGACGTCCACACGCTCCAACAGGCGCTGGACGTCGCCCCGTCGCCT
CGTCTTCGCACGGCACAAGACCGTGCGGAGCACGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGCGCCACCCGGAGGACGTCACCTACGAGCAAGCCTACTGGCCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCGATTGGACAGGCGTCGGCGGAAGGCCCTGGCGCTATCGCAGTGCGAAATCGTTGAGAA
TGGTTGTCAGACGATCTTTACGTCTGATGATGATCGTTGGGAGGACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---CGATGACGATGACGAC------TGGAAGTAGGCTGTAGTTGCGTATGTAGTTGCACTATCTAATAGTTTT
TGTCTATGTCGTTGCACTACCTAG-TAG-----TTTTTATCTATCTATGCTATGGAACTATGTAAAATATTTATGTATCG
T-TTTT-C-TATCTAT-GAATTTTATTTATCTTTTTATTAA-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCGCTGAAGCT--AC--GCGCGCGCTCAATTTTGACGCGTCTGCTGGAGCCAGCGCT----GCCGGCCGCGCCAA
ACCAGGCGAACGGCGCGCGGCAAATGCTTTTTTTGCGCGCGGCGCGTTGCACGGCTGTTGGAGATGCTCT----------
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>chr1B_784
--------------------------------------------------------------------------------
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----------------CTTCCGCTGCCACGCGTG---CCACCGCTCCAGCGCCCC--GCCAC----------------CG
CCGCGCCGTCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCAAGATACGGTCCGG
------CGAACTCCAGCTCGGCCTCGGCACCTTCAAGACGGCGCACGAGGTCGCCCGCGTGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGTGCCCGCAGATGAACTTCCACGACGTCCACACGCTCCAGCAGGCGCTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACCGTGTGGAACACGCTGAGCAGCAGCGCCGCATCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAGCGCCACCCAGAGGACGTCACTTACGAGCAAGCCTACTGGGCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCGGTTGGACAGACGTTGGCAGAAGGCCCTGGCATTATCGCAGTGCGAAATCGTTGAGAA
TGGTGGGCAGACGATCTTTACGTCTGATGATGATCATTTGGACGACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGACGACGACGAGTGCGAGTAGGCTATAGTTGCGTATGTAATTGCATTATCTAGTAAATG-
TTTTTATGTCGTTGCACTATCTAG-TAG-----TTTTTATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCG
TCTTTT-C-TATCTAT-GAATTTTATTTATCGTTTTATTAA-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCGCTGGAGCTACAC--GCGCGTGCTCAATTTTGACGCGGCTGCTGGAGCCAGCGCT----GCCG----CGCCAA
ACCAGACGAACGGCGCGCGGCAAATGCTTTTTTTGCACGCGGCGCGTTGCGCTGGTGTTGGAGATGCTCT----------
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>chr5D_801
--------------------------------------------------------------------------------
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---------------------------------------------------------GCCACCGACGCGCCACCATGCCG
CCGCGCCGCCGAGGAGCGTCGGGCTACCGCGGCGTCCGCCAGCGCCCCAACGGCGGGTTCTACTCCGAGATACGGTCCGG
------CGAACTATGGCTCGGCCTCGGCACCTTCGAGACGGCGCACGAGGCCGCCCGCGCGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCCGCAGATGAACTTCCACGACGTCCACACGCTCCAGCAGGCGTTGGACGTCGCCCCGCCGCCT
CGTCTTCGCACGGCACAAGACCGTGCGGAGCACGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGG-
TCATGGCGGAGTGGCGCCAACGCCACCCGGAGGACGTCACCTACGAGCAAGCCTACGGGGCAAGGCGCCGCGAGGAGGAG
ACGCAAAGGCGCCGCGATGAGCGGTTGGAAAGGCGTCGGCGGAAGGCCCTGGCGTTATCGCAGTGCGAAATCGTTGAGAA
TGGTGGGCAGACGATCTTTACGTCTGATGATGATTGTTGGGACGACATGTGGCTCGATACCTCGGACCAGACCAGCGAGG
ATGGCGA---TGATGATGATGACGACGACGACTGGGAGTAGGCTGTAGTTGCGTATGTAGTTGCACTATCTAGTAGTTTT
TTTTTATGTCGTTGCACTATCTAG-TAG-----TTTTTATCTATCTATGCTACGGAACTATGTAAAATCTCTATGTATCG
TTTTTT-C-TATCTAT-GAATTTTATTTACCGTTTTATTAA-AAAA-TATACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCGGCCGCTGGAGCTACAC--GCGCGCGCTCAATTTTAACGCGGCTGCTGGAACCAGCGCTGCCGGCCG----CGCCAA
ACCAGACGAACGGCGCGCGGCAAATGCATTTTTTGCGCGCGGCGCGTTGGGCGGCTGTTGGAGATGCTCTAA--------
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>chr5D_871
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-----------------------------------------------CAACAGCGGGTTCTACGCCGAGATACGGTCCGG
------CCAACTCCGGTTCGGCCTCGGTACCTTCGAGACGGCGCACGAGGCCGTCCGCGTGTACGACGCGGCGGCGTGGC
GCCTAGGCAGGCCGCGCCCGGTGATGAACTTCCACGACGTCCACACCCTTCAGCAGGCGCTGGACATCGCCCCGCCGCCT
CGTCTTTGCATGGCACAAGATCGTGCGGAGCATGCTGAGCGGCAGCGCCGCCTCCTCGTCGCCCATGAGGACGAGCGGA-
CCATGGCGGAGTGGCACCGGCGCCACCCGGAGGACGTCACCTACGAGCAAGCCTACTGGGCAAGGCGCCGTGAGGAGGAC
ACGCAAAGGCGCCGCGACGAGCGGTTGGATAGGCGTCGGCGAAAGGCTCTGGTGATATCGCAGTGCGACAACGTTCAAAA
TGGTGGGCAGTCGATCTTTTCAGCTGATGATGACCGTTGGTTGGACATGTGGATCGATACCTCAGACCAGACCAGCGAGG
ATAGCGA---CAATGACGATGACGACGACGACTGGGAGTAGGCTGTAGTTGCGTATGTAGTTGCACTATCTAGTAGTTA-
-TTTTATGTCGTTGCACTATTTAG-TAGTAGTTTTTTAATCTATCTATGCTATGGAACTATGTAAAATATCTATGTATCA
T-TT--TT-TATCTATGAATTTTTATTTATCATTTTATTAA-AAAAATGTACGCAATGTTTAGCGCGCGCTGCATTTTAG
CGCG-CCGCTGGAGTTACGC--GCGCGCGCTCAATTTTGACGCGTCTGCTAGAGCCAGCGCT----GCCGGCCGCGCGAA
ACCAGGCGAACGGCACACGCCAAATGCGTTTTTTGCGCGCGGCGCATTGCGCGGCTGTTGGAGATGCTCTAA--------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr5D_1815
--------------------------------------------------------------------------------
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----------------------------------------------------------AGAGCAACTCCAATG-GGTGAC
CCATTTTGTCCGTTTGGATCATCCGGACGCAAAACTTGGTCCAACGGGGCGACCCAAACGGACACAGCGTCCGCCTGTTG
TCCGTTTCGCGTCCGCTTGGACCCATATCCGGCTCAAATTTGGGTCACATTTAGGTCCGTGGCGGACGTAAACCGGACGT
TTTCTGTGGCCTCCTCGTCCGGCTCCGTCCGCTGCATGCGAGCACTGACCCATCTGTCAGCGAGAGGCCACCTACCCATC
CCACCCCGTCTCTCTCTCCTCTTTTTCGTTCTTTCTCCCATCAACCCCACAGCGGCCCGCCGCCGGTCGCTTTGGCCTCC
GTCGCGAGCTAGCAGGCAGCAGGGGCTGCTCGTTGGAGCCGCACCCGTGCTAGCTAGCTAGCTAGCCGCCGGC-------
-----CGCGGGTGCTAGCTAGTTAGCCGCGGCGCCACCGGCCGAGCTGTCCGCCGCGCGTGCTAGCTAGCTAGCTAG---
-------CTGCAACTCGACGACGCCGGCCTCGCCTTCCACCGCCC------------TCGCCTCCCCGCGCCGCCGCTCG
CCCTGCCCCACGCTCGCCTCGCCCGCGCTCGTCCCGGCCTCGCC
>SNPs
---------------------------------------S---------------S-------SSSSS--S---------
--------S--S-----------------------------------------------------------------S--
------------------------S--------S--------------------S-------------------------
------------------------S------------------S------------------------------------
--------S----S-SSS-----S--S-------------------------------S---------------------
--S--SS------S---------------------------S-------------------------------------S
--------SSS---------------S-------S--------------------SSSSSSSSSSSSSSSSSSSSSSS--
------------------------------S------------S----S-------------------------------
--------------------------------------------------------------------------------
-------------------------S--------------S------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------------------------S----------S----------------------------------
-----------------S--------------------------------------------------------------
--------------------S-----------------------------S-----------------------------
-----------------------S-----------------------------------------------S--------
--------------------------------------------------------------------------------
-----------S---------S--------------------------------S-------------------------
--------------------------S---------S-------------------------------------------
-------------------------------------------------S---------S--------------------
----------------------------SS-SS-----------------------------------------------
-----------------------------------------S------------S-----------S-------------
-------S----------------------------------------------------------------SS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----S------
---------------S-S-------SS------------S-----SS-------S------S--S-----S--S---S-S
-S-----S-S--S---------S------SS---S-----------------SSSS-SSS--------------------
-----S---S--------S--S------------------S------S-------------------------------S
-------SSSSSSS-------------S--------------S------------------S----S-------------
--S------------------S--------S------------------------------------------SSSSSSS
SSSSS----------------S-----------------------S--S------S--SSS-SSSSSSS-SSSSS-SSSS
SSSSSSS-----SSSS---------S---------S--S----S-SSSSSSSSSSSS-----------------------
----------------------------------S---------
>forward_338
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CA
CGTTGCCGCATCTATGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_1876
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------ACTCGCATACATGTGTGGCA-------------------------
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--------------------------------------------
