>input_sequence_81020
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---------------------------------------------------------------A--------TGGTTTTG
TCTATGAAGCACTGCAGAGATCAGGCCCAGGAGG------TGCCCTTGTCCCTCTCGCTCTC------CCTCGGCGCCAT
GGCCGACCGCACCAAGAAGCAGCGCCGCGGCGTCGCTGCCGGCGAGTTCGTGTGCAAGACGTGCAGCCGCGCCTTCCCGT
CGTTCCAGGCGCTGGGCGGGCACCGGACAAGTCACCTGCGCGGCCGCCACGGGCTCGCGCTCGGCCTTGCCGCCGGGATC
AATGAGCCGTCGTCGACCAAGAAGACGGTGGACCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTTGAGTTCGAGAT
GGGCCAGGCGCTCGGCGGCCACATGCGCCGGCACCGCGAGCAGGAGTCCGCCACCACGGCGCAGGCACCGCCCGTTCTGC
TCCAGCTCTTCGTCTAG---------------------------------------------------------------
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>chr5A_1_TraesCS5A01G477500
AGATTAGTTTTTGGAAACAGGCCCATGATGCTCCGTAAATCGTCCGTGTCTGTAGGATTTTCGCAAGCACATAGCGTCTC
CAGCATTGCAGGGGAACACGGCAGGTAGAGGACCGCAGAGCAAGGAAAGACGTCGTGGATGAACATTTCATCTATCGATA
TGCCGTCCCAACGATGCCCATCCTTTGCTCGATCAAACACCTCGGCCAATCGTCAATGTAATTTATCCCCGCAAAAAACA
TCATCAATGTAATTTCCTTTTGATCGGCAATGACATGAGTCCGTATTGAGGTTAGTCCTAGTTTCAGAAAAACGACACGC
GCACCCGCGTACGACTGTAAAAACACTGACGATCGATCGAGACGCGTGGTGCCTGTACCTCCACGGAGAAATTCCATAGC
TACATATACATGTGGTGCAGCAATTTAGGTGAACGCGGCAAGACATTTTCGGGCTAGAGAAGAGGAGCAGAGCGAAAAAT
CGGAAATTTGGAGTCGTGCGACTTCTTGTGGCGCAAGACTCGTCGTGGACTAGCCTATCAAATCAGTGCAACAACCTACT
ACTGTTTGGGTCCCACGGCAACGGACACCGCGAGCCAAA-AATTAAATAAGCTTCCG-----TCCCATTTCGCGGGCCCT
TCCGT----CCAACCGCGTTCAGGCTACCTGGGTCCTGGGGAGCAAGCTTGAGCGATCATTC-TAACTGACGCGAGC---
-----GAACACACAAGATTCTGCCTTTTCAGACCTGCGCTTCAGCCGGGCC-----------------------------
-GACGCCGATCGCGACTTGGCTCCAAGTCCAGACGTCAACAACGACGTGGCGTA--------------CCCGGCTGCTAT
CACCTGCGACC---AGTACCCCATCATCATCACTAGTATAAAAGGCCAACAATCCACGGAACCCAACAACATCCACAAC-
----CAA-----------TTCCGAGTCCCAGAATCCACATCTCATCTCCT-----CCATCAGTTCC---------GCAGA
TCGCACGAACTCTCGTTGAGC-----AGCTCATACCGGACTAGCT--AGCTAGCCGCGCGCTCA--------TGGTTTTG
TCTATGAAGCACTGCAGAGATCAGGCCCAGGAGG------TGCCCTTGTCCCTCTCGCTCTC------CCTCGGCGCCAT
GGCCGACCGCACCAAGAAGCAGCGCCGCGGCGTCGCTGCCGGCGAGTTCGTGTGCAAGACGTGCAGCCGCGCCTTCCCGT
CGTTCCAGGCGCTGGGCGGGCACCGGACAAGTCACCTGCGCGGCCGCCACGGGCTCGCGCTCGGCCTTGCCGCCGGGATC
AATGAGCCGTCGTCGACCAAGAAGACGGTGGACCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTTGAGTTCGAGAT
GGGCCAGGCGCTCGGCGGCCACATGCGCCGGCACCGCGAGCAGGAGTCCGCCACCACGGCGCAGGCACCGCCCGTTCTGC
TCCAGCTCTTCGTCTAGCAC-CGCAC---TCATTTCTCTCAAGTTCA------ATACACTAGCTAGGCATATCTAGTTCT
AGTCCAGATTTACAGGTTGATCTATGTGCGCGGTTTGGTTTGTACATTTGCTGCACACTA---------GTTGGCCTTGA
TCGTTGT-CCGATCGCTCA-TTTTATTAGG-------GA--GTACATATTTT----AGGACTCATGCATTCGTTCATT-A
CTC-------ATATTATCTATTGGTGCCTTCTTGATTCGTACATTTATTTTGTTCTACTTG----AATCGACTACGAGTT
TGAGTTAATCGACCTAATGAAGACCTCCCTAACACGGATTTTCTTTTCTT-GAAAAGGAGCCAAGCCGTGATCTCGGCAT
ATGCATCAATTGACACACACAACTATTTCAGAAGTGAATCT---------------------------------------
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-------------------------------------------------------------------AAAAAGTTATATG
GAGAGGTGAGTTTGTGGTGAGAGGTGGAACTGGCGGGCCGATTGTCACATCGTAGATTTGGAGTGTAGATGATGCGGTGA
TTATGTGTAGCGAGAGCTCTGTGGTGGGGACACCTGATATTTGGAGCATTGGTATTCATGTTGAGAGGCATAGTACGTGG
TATGTACACATAACGAAGCAAGCAAGAATTTATGTTCAGATATGCTTGGGAGAGCATGCATGATGTCGATTTCATAGCGT
GCTTAGGTCTAACGAGCGAAAG--------GAGTTGAATCACTGGCTCACTTGTCGGCGCCAACATTTGTATGAGAGAGG
ATGGATGAGACGCGATCACCAACTCCCATTTGAAGGTACTGCAGGGTCAATTCGCTGGGCACATTTGTCGGCGCCATCAT
TTGTTTGAGAGAGGATGGAGGGCGTGCAATCATCTATTCGAAATATTAGCATTTTTCTGATTAGACTTATCCATGAGTAA
ACAATAAGCATGGCATAAAAGGTATGCATCTCATAGCGATACCTAAGCATACTAGCACGTAGAGAACATAGAATCGAACC
GTCTATGAGCAGCACATATACGGCTAGCATAAGTACGAGTAAACGAGGGATGAACAGA
>chr5D_585
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------------------------ACACCGTGAGCTCGCTAATTAATTAAGCTTCCG-----TCCCATTTCGCGGGCCCT
TCCGTACGTCCAACCGCGTACACAGCCTTGCCTACCTGGGGAGCAAGCTA-AGCAATTGCTC-CAGCTGACGCACGACAA
GAGGAGAGAAGAGAAGGTTCGGCCTTTTCAAACACGCACTTTAGCCAGGTC-----------------------------
-GA------------------------------CGTCAAGAGAGACGTGGTGTACACGTGACGACGCGCCCGGCTGCTAC
CACCTGCGAGTACTAGTACCCCATCCCT----CTAGTACAAAAGGCCAACAATCCACAGAACCCAACCACATCCACAGC-
----CAATT-CCGAGCTCTTCCGAGTCCCAGAAGCCACCTCCCATCTCCT-----CCATC-GTTTC---------GCAGT
TCGCACAGACCTACGTAGTACCATCGAGCTCGTACCGGACCAGGACCAGCTAGCCGCGCGCCGA--------TGGTTTCG
TCGATGAAGCACTGCAGAGATCAGGCACCGGAGG------TGCCTCTGTCCCTCTCGCTCTC------CCTCGGCGCCAT
GGCCGACCGCTCCAAGAAGCAGCGCC---GCGGCGCAGACGGCGAGTTCGTCTGCAAGACATGCAGCCGCGCCTTCCCGT
CGTTCCAGGCGCTGGGCGGCCACCGGACCAGCCACCTGCGCGCCCGCCATGGGCTCGCGCTAGGCCTCACTGGCGGGTC-
--CGATCAGCCGGCGACCAACAAGGCGACGGACCAGAAGCAGGCCCACCAGTGCCACGTCTGCGGGCTAGAGTTCGAGAT
GGGGCAGGCGCTGGGCGGCCACATGCGCCGGCACCGCGAGCAGGAGGCCGCCACCACGGCGCAGGCACCGCCCGTTCTGC
TCCAGCTCTTCGTCTAGAAC-CGCAC---AGATTTCTCTCAAGTTCA------ATA-----GCTAGGCATAT--------
----CAGATTTACAGGTCGACCTATGTGCGCGATTTGGTTTGTACATTTGCTGCGCACTA---------GTTGGTCTTGA
TCCTTGGCCCGTTCGCTCA-TTTTATTAGGTATATATATACGTACATATTTTAGGGAGGACTCATTCATTCGTTCATTCA
TCACTG---------ATCTATACT----TTATTGATTCGTACATTTATTTTGTTCTACTTGATTGAATCGACTACGAGTT
GAGTTAAT----CTGAATGAAGTTGTCCCTAACACGAATTTTCTCTTCTT-GAAAAGGAGGCAAGCCGGG-TCTCGGCAT
ATGCATTGATTGACACACACAACTAGTTTTAGAA----------------------------------------------
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>chr5B_600
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----------------------------------------AATTAATTAAGCTTCCGTCCCATCCCATTTCGCGGGCCCT
TCCGTACGTCCAACCGCGTACAGGT------CTACATGGGGAGCAAGCTA-AGCAATTGCTCTCAACTGACGCACCAGAG
-----GAGAAGAGAAGGTTCGGCCTTTTCAAACACGCACTTTAGCCGGGTCGACGCCGATCGCGACTGGCTCCAACCTCC
AGA------------------------------CGTCAACAACGACGTGGTGTACACGTGACGACGCGCCTGGCTGCTAC
CACCTGCGAGTACTAGTACTCCGTCCGT----CTAGTATAAAAGGCCAACAATCCACGGAACCCAACCACATCCACAGC-
----CAATT-CCGAGCTCTTCCGAGTCCCTGAATCCATCTCTCATCTCCT-----CCATC-GTTCC---------ACAGA
-CGCACGAGCTCTCGTCGAGC-----AGGCCATACCGGACTGGCT--AGCCGAGCT------------CCGATGGTTTCC
TCAATGAAGCAGTGCAGAGATGAGGCCCAGGAGG------TGCCCCTGTCCCTCTCGCTCTC------CCTCGGCGTCAT
GGCCGACCGCAGCAAGAAGCAGCGCCGCGGCGGCGCAGATGGCGAGTTCGTCTGCAAGACGTGCAGCCGCGCCTTCCCGT
CGTTCCAGGCGCTGGGCGGGCACCGGACTAGCCACCTCCGCGGCCGCCACGGGCTAGCGCTCGGCCTCACTTCAGGGTC-
--CGATCAGCCGGGGACCAAGAAGACGACGGACCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTGGAGTTCGAGAT
GGGGCAGGCGATGGGCGGCCACATGCGCCGACACCGCGAGCAGGAGGCCGCCACCACGGCGCAGGCGCCGCCCGTTCTGC
TCCAGCTCTTCGTCTAGCAC-CGCAC---TGATTTCTCTCAAGTTAC------A-----TAGCTAGGCATTTCTGGTTCT
AGTAGAGATTTACAGGTTGGCCTATGTGCGCGGTTTGGTTTGTACATTTGCTGCACACTACTGTAGCTCGTTGGTCT---
----------GTTCGCTCT-TGTTAGG-----TATATAT--GCACATATTTT----AGGACTCATTCATTCGTTCATTTA
CTGTTTACTGATATTATCTACACT----TTATTGATTCGTACATATATTT-GTTCTACTCAACTAG------TACGAGTT
GAGTTAAC----CATAATGACGATCTCCCTAACACGGATTTTCTTTTCTT-GAGAAGGAGGCAGGCCGGG-TCTCGGCAT
ACGCATTGTTTGACACACACAATTATTT----------------------------------------------------
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>chr5A_809
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-----------------------------------------------------------------------GGCTGCTAC
CACCTGCGAGTACGAGTACTCCATCCCT----CTAGTATAAAAGGCCAACAATCCACGGAACACAACCACACATCCACGA
GACACAATT-CCGAGCTCTTCCGACTGACTGAATCCATCTCCCATCTCCT-----CCATC-GTTCCGCGGATCGCACAGA
-CACACCAGCTCTCGTCGAGC-----AGCCCATACCGGACTAGCT--AGCTGCCTGGCTAGCCCCGTGCCGATGGTTTCC
TCGATGAAGCACTGCAGAGATCAGGCCCAGGAGG------AGCCCTTGTCCCTCTCGCTCTC------CCTCGGCGCCAT
GGCCGACCGCACCAAGAAGCAGCGCCGCGGCGTCGCTGCCGGCGAGTTCGTGTGCAAGACGTGCAGCCGCGCCTTCCCGT
CGTTCCAGGCGCTGGGCGGCCACCGGACCAGCCACCTGCGCGGCCACAACGGGCTCGCGCTTGGCCTCGCTGCCGGGTC-
--TGATCAGCCGGGGACCAAGAAGACCACGGACCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTGGAGTTCGAGAT
GGGCCAGGCGCTCGGCGGCCACATGCGCCGGCACCGCGAGCAGGAGGCCGCCACCACGGCGCAGGCGCCGCCCGTTCTGC
TCCAGCTCTTCGTCTAGCAC-TGCATCACCGATTTCTCTCAAGTTCA------A-----TAGCGAGGCATATCTAGTTCA
AGTCCAGATTTACAGGATCACCTATGTGCACGATTTGGTTTGTACATTTGCTGCACAATA---------GCTGGTCT---
----------GCTCGCTCA-TGTTATTACGTATATATGT--GTACATATTTT----AGGACTCATTCATTCGTTCATT-A
CTGTTTACTGGTATTATCTATACT----TTATTGATTCATACATTTATTTTGTTCTACTTG----AATCGACTACGAGTT
GAGTTAAT----CC--ATGACGATCTCCCTCACACGGATTTTTTTTTCTTTGAAAAGGAGGCAGGCCGGG-TCTCG----
---------TTGACACACACAATTATTTTTAGTATAATAAAACTCTAGGTCATATGTAAAAAGCAGAAAAAAGAATTGTT
GGCAAAGAGAAAAGGGAGCATAAAATAGACAGCAGTTGTGTCGCAGGGCGGAAGTGATCATACATCAAGATGGTTTTCGG
CCATGGTTATCTCGATGGTTACGTGTCTATGAATCTCCCCTGCAAAAAATATGTATGTACAAACCTAAAAAAGTTGTATG
GAGCGGTGAGTTTGTTGCGAGAAATGAGAGTTGTGGGCCGATTATCACGTTGTAGATCCGGAATGT---------GGTGA
TTATGTGTAGGGAGAGCTCTGTGTTTCGAGCACCCAATATTTGGATCATCAGTATTCATGTCGAGAGGCATAGTACGTGG
TATGTAGAGATAACGTAGCAAGGAAGCATTTGTGTTGATATATGTTTGGGAGA----GCATGATTTTGATTTAAAAGCGT
GCTTAGGTCTAACGAGGCAAGTAAGGAAATGAGTTGAATCACTGACTTACTTGTGGGCGCCAACATTTGTTTGAGAGAGG
ATGGATGAGACGCGATCACCAACTCCCATTTGGAGGTACTACAAGGTCAATTTGCTGGCC-CACTTGTCGGCGCCATCAT
TTGCTTGAGAGAGGATGGA-------------------------------------------------------------
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>chr5A_842
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---------------------------CATCCATAGAATAAAAGGCCAAAAATCCACGGAACCGAGCCACATCCACAGC-
----CAATTCCCGAGCTCTTCCGAGTGACTGAATCCATTCCACATCTCATCACGCCCATC-GTTTCACAATTCGCACAGA
-CGCGCCAACTCTCGTTGAGC-----CAGCCCATATCGCATTTGCCTCGC-----------------GCCCATGGTCTCG
TCAATGAAGCACTGCAGATATCAGGCC---GAGG------TGCCATTGTCCCTCTCGCTCTC------CCTCGGCGCCGT
GACTGGACGGAACAAGAAGACACGCC---GCAGTGCAGACGGCGAGTTCGTGTGCAAGACGTGCAGCCGCTCCTTCCCGT
CGTTCCAGGCGTTGGGCGGACACCGGACAAGCCACCTGCGCGGCCGCCACGGGCTCGCGCTCGGACTCGCCGCCGGGAC-
--CGATCTGCCGGCGACCAAGAAGGCCACGGAGCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTCGAGTTCGAGAT
GGGGCAGGCGCTGGGCCGCCACATGCGTCGGCACCGCGAGCAGGAGGCCGCCACCACGGCGCATGCGCCTCCCGTTCTGC
TACAGCTCTTCGTCTAGC--------------------------------------------------------------
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>chr5B_987
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-------------------------------------------------CTAGCCGCA---------GCAGATGGTTTCG
TCGATGCGGCAGTACACGGATCAGGCA---GAGG------CGCCCTTGTCCCTCTCCCTCTCGCTGTCCCTCGGCGCCAT
CGCCGACCGCAGCAAGAAGATGCGCC---GCGGCGCAGATGGCGAGTTCGTGTGCAAGACGTGCAGTCGCTCGTTCCCGT
CGTTCCAGGCGCTGGGCGGACACCGGACCAGCCACCTACGCGGCCGCAACGGGCTCGCGCTCGGCCTCGCTGCCGGATA-
--CGATCAGCCGGGGAGCAAGAAGATCACGGAGCAGAAGCAGGCGCACCAGTGCCACGTCTGCGGGCTCGAGTTCGAGAC
GGGGCAGGCGCTTGGCGGCCACATGCGGCGGCACCGTGACGACGCGGTCGCCACCACGGCGCAGGCACCGCTCGTGCTGC
TCCAGCTCTTCCTCTAGCTGGTGTTCCATTGGTTTCTCTCCAGTTGGTTCAATA-----TAGGTAGGCA--------TCG
AGTGCAGATTCACCGGTTAACCTGTGTGCGCGATTGGATTTGTACATTTGCTACACACTT---------GTAGGTGTTGA
TCGTTGGTTCATTCTCTCATTTTTATGATT-------AT--GTACATA-TTT----AGGACTTGTTCGCTCGTTGATT-A
CTA-------AGACTACATATACGTTACATTGATTTGTTCG---TTATTCTGTTCTAACTG----AGCCGCCTACGAGTT
GAGTC---------------------------------------------------------------------------
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---GATCAATCCTGATAAACAACTCCC-----------------------------------------------------
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>chr5A_996
CG------------------------------------------------------------------------------
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---------------------------------------------------------------------CCATGGTTTCA
TCAATGAAGCAGTACAGAGATCAGGCC---GATGCGCCCTCGCCCCTCTCCCTCTCTCTGTC------CCTGGGAGTCGT
CTCCGACAGCAGCAAGAAGATGCACCGCGGCGGCGCGGACGGTGAGTTCGTGTGCAAGACGTGCAGCCGCTCCTTCCCGT
CGTTCCAGGCTCTGGGAGGACACCGGACCAGCCACCTCCGTGGCCGCCACTGCCTCGCGCTCGGCCTCGCTGCGGGGTC-
--CGATCAGCCGGGGACCAAGAAGACGGTGGACCAGAAGCAGGCGCACCGGTGCCACGTCTGCGGGATCGGGTTCGAGAT
GGGGCAGGCGCTTGGCGGCCACATGCGCCGCCACCGCGAGCAGGAGGCCGCCACCACGGCGCAGGCGCCGCCCGTTCTGC
TCCAGCTCTTCCTCTAGCAC-TGCACCATCGATTTCTCTCAAGTTCA------A-----TAGCGAGGCATATCTAGTTCT
AGTCCAGATTTACAGGATCACCTATGTGCACGATTTGGTTTGCACATTTGCTGCACAATA---------GTTGGTCT---
----------GCTCGCTCA-TGTTATTAGGTATATATAT--GTACATATTTT----AGGACTCATTCATTCGTTCATT-A
CTGTTTACTGATATTATCTATACT----TTATTGATTCATACATTTATTTTGTTCTACTTG----AATCGACTACGAATT
GCGTTAAT----CCTAATGACGATCTCCGTAACACAGATTTTTTTTCCTT-GAAAAGGAGGCAGGCCG------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS------S----SSSS-------S---------------------------------
-------------------S----SSSSSSSSSS---------------SS---S--SSS---S---------SS-S---
-------SS-S-S---S---S---------S--SS--S---S-------S------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S----------------------------S
---------SS--------------SS----S-----------------------------------S---------S--
--------------------------------------S---------------------S-------------------
-------------------------------------------------------------S----------------S-
--S-----------------------------------------------------------------------------
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-------------------------------S-----------------------------------S----------SS
SS---S-S-S--S-------------------------------------------------------S-----------
----------------------------------------------S---------------------------------
------------------------------S-------------------------SSS---------------------
--------------------S-----------------------------------------------------S-----
------S----S--------------------------S--------------------------S--------------
--S------------------SS--SS---S-------------------------------------------------
SSSS-S-SSSSS-----------S------------------------------------S-------S-S---------
------SS--------------------SSSS-S-S-SSSS---------------------------------------
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---------------------------------------------------------------------------S----
---S-----------S-S----SS--SS-S-S-S---------S----S-S------SS---S---SSSSSSSSS-----
----------S------------S-SS-SS----SS---------S---SS----------S------------------
------S-S------S------S---S----S----S-S-----S--------SSSS-------S-S-----S-S-----
----------------SS--SS----------------------S--S------S---------------S---------
--------------------------------S-------S--S--------S-----S-S--S----------------
---S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_475
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-------------------------------------------------------AGAGAAGAGGAGCAGAGCGA-----
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>reverse_2714
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-------------------------------------------------------------------------TCGAACC
GTCTATGAGCAGC---------------------------------------------
