>input_sequence_81016
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGAGTACTATAGCATTATCCTCCGGTTTCCATGCCATGC
TACATATCCTTTCATCAAACTTCTGCCTCTCAATGTCCTGCCTTGACTTCACATCCCAGACAAGCACCTGCCTATCCAGG
CCAGCAGTTGCCAGGTACCTCCCATTCGGGGACCAGCAAAGGCTGCATATTGGCTGCTCATGTTCTCCTTTCAGTGTGAA
TACCTCCTCCGCAGTGTCCCTGTCATACATGACCACATTATTCCTCAGCCCAGGAACAGCAAGGGTGTGTCCATCGGGAC
TCCAGCACAGGGTATTCTTCACCGAGTGGTCAGAACCGAATGTTGGGGCGACACGAGTCAAGCTTCGTGCCTCACTGCCC
AAACAAAGATCCCAAAAGATGACCGTGCCAAAGCTGTCGATTGATGCCAGATAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr5A_1_TraesCS5A01G166900
AAGATGCGCAAAAAATTTAAACTTGTGACTGCAGCAACCCATCCAGCACCAAGAGCCACAGACTTCACTTCTTCTCCCTC
AAACCTCATTGACCACTACAATTGGGCATACATAAACACCCCTTGTTTCAGTAACCAATAAAGGTGAGCTACATTAAAAC
TCTCTAATTCTTGAAGGTGCAGAACATTTATGTTAGATGTAAAAAATCTTACCTCACTGTTACCAGCCCAGCTGCTGAAG
GGGCGGTACATAAGAGTGCTCATATTGTTGTCTCCCTTGCATGGATTTGCAAACACGCTTCCTGATTCATTCAGTGCAGC
CATGGTGAAACCAAAATAGTCGGTCATGGAAGGGACTCTGGGGCCTCTTCCTGTGTCGTGGAAGTCAACCTGGAAAATGA
TTATAAATGTCAGAACTTCAGCAGAGAGCCAATAAAACAGTATAACTTCACATAGTTTATTCAGTGGCTTATGAAGCAAA
CAACTGAAAAGGGGATCTTACCTCTACATGTGAGTGCCCCTCATTTTCAATGGTAGTAATACTTCCAAGCATGTTGTAAG
CAAGGAAATTTCGCTTGCCAGGATGAGATGGCGTTGACCCAGGCTGGAAGGCAGCTTGCATTCTTGCTGTAACCAACCTT
CCAGAAGTTGCCGAATCATCCATTGCCTTCCTAGCACCTTCTTTGTTATCTTTGTGCCTACCTTTTGTTCTCTTGCCTGA
CTGCATCTCGTGTATCATATCCTCTTCTTCGCTATCTCCATTCATGTGGTCATCAAATGTGGCCTTTCTCCTTGACCGCT
TGTGGTTGAAAGGTGCTGAATCACCAAGACTTTCATCGATCTCATCATCAAAACCAGCCGATGTGCTTGGTTTTTCTTCT
TCGTCTTCGTCATCAAACAATGGAACCCTCGGCAGGTTTAGCTCAGGCGCACCCTCAGTGGGCGACTTCATAGTCGAAGG
GACCACTGATTCCCAAACCCCAAATTTACCCATTACATCAATGAGTACTATAGCATTATCCTCCGGTTTCCATGCCATGC
TACATATCCTTTCATCAAACTTCTGCCTCTCAATGTCCTGCCTTGACTTCACATCCCAGACAAGCACCTGCCTATCCAGG
CCAGCAGTTGCCAGGTACCTCCCATTCGGGGACCAGCAAAGGCTGCATATTGGCTGCTCATGTTCTCCTTTCAGTGTGAA
TACCTCCTCCGCAGTGTCCCTGTCATACATGACCACATTATTCCTCAGCCCAGGAACAGCAAGGGTGTGTCCATCGGGAC
TCCAGCACAGGGTATTCTTCACCGAGTGGTCAGAACCGAATGTTGGGGCGACACGAGTCAAGCTTCGTGCCTCACTGCCC
AAACAAAGATCCCAAAAGATGACCGTGCCAAAGCTGTCGATTGATGCCAGATAATCATTTTTGGGGTCAAAAGCCAGCCC
GGTCACGGAGCCCTTGTGACCTTTGAGCACCTTGGAGATCGTGTTGTCGACTGTAGCAATCAGCTTGATGCCGTCGTCAT
CGCCGGCGGCGGCCAAAAGGGCGCCCTTCTTGTTGAACGCCAGTGACCGGATCGGGAGGGTGAACCGGGCAACGTTGCTC
TGGAACGTGCCGTCTGGAAAGAAATTCGGAGACATTTACAGATCTCGAAGTGAAAACAAAAATATAGAG---TACTCGGA
TAAGATACCGCGCATCAGGACGGTCGGAACCACGAACCTGGGAAGGAGTAGAACTTGACGGAGTGGTCGATGGAACCGGA
AGCCAGCGAGCCGCCGGAGCCTGGCGCGAGGGCGACGGCCGTCACGCCGTCCTTGTGGAGCCGGATCGTGGCGGCGGCCG
CCGCTGAACCGGAGCCCCGGGCCCCGGTCCCCCCGGCGCTCACGGCGGCGGCGTCGTGGATCAGGATGGCGACGTCGGCG
GCGGACGCGGTGACGACGTGCTGCCCCCCGGGGGCCCAGGCGACGGAGCAGAAGGCCGGGGAGCCCGAGCCCGCCTTGTG
CGCCTCCCGCAGCTTCACCGCGCGCCCTTTCATGGCGACACCGC--GAGAGAGATGCTTCGCGTCCGAGGCTTTCTTGGT
GAGTTGGGGTGGGGATTTCGTGAGATTGGCCAAGATGCGGGGCGGGCGTTTATGTGTTTCGATATGCT-GGGGCTAAACG
AGTGGCGCGAAATTTCGGGGGTTTTCCCGCGGGAAATGGTCCGCTGGCGGGAAGATGGTCTTACCAGTAGGACCCGCGCG
ACTCCTCGCGGAAAGCTTACTGTC--CACCGTGGGCCAACGTTGGGCCAACCTAGCATCTCCCTTCGATCGAGTAATCTA
TTTTTATAGATTTCTCAAAAGAAAA-AC-ATAGTGAAAACTATTTTTATAGTAGTATGTAATATCGGTGTGCAATGCTCT
GACCATATTGTCATCAAGTATAAA
>chr5D_1
AAGATGCGCAAAAAATTTAAACTTGTGACTGCAGCAACCCATCCAGCACCAAGAGCCACAGACTTCACTTCTTCTCCCTC
AAACCTCATTGACCACTACAATTGGACATACATAAACACCCCTTGTTTAAGTAACCAGTAAATGTGAGCTGTATTAAAAC
ACTCTAATTCTTGAAGGTGCAGAACATTTACGTTAGATGCAAAAAACCTTACCTCACTGTTACCAGCCCAGCTGCTGAAG
GGGCGGTACATAAGAGTGCTCATATTGTTGTCACCCTTGCATGGATTTGCAAACACGCTTCCTGATTCATTCAGTGCAGC
CATGGTGAAACCAAAATAGTCGGTCATGGAAGGGACTCTGGGGCCTCTTCCTGTGTCGTGGAAGTCAACCTGGAAAATGA
TTATATATGTCACAACTTCGGCAGAGAGACAATAAAACAGTA--ACTTCAGATAGTTTATTCAGTGGCTTATGAAGCAAA
CAACTG-AAAGGGGATCTTACCTCTACATGTGAGTGCCCCTCATTTTCAATGGTAGTAATACTTCCAAGCATGTTGTAAG
CAAGGAAATTTCGCTTGCCAGGATGAGATGGCGTTGACCCAGGCTGGAAGGCAGCTTGCATTCTTGCTGTACCCAACCTT
CCAGAAGTTGCTGAATCATCCATTGCCTTCCTAGCACCTTCTTTGTTATCTTTGTGCCTACCTTTTGTTCTCTTGCCTGA
CTGCATCTCATGTATCATATCCTCATCTTCACTATCTCCATTCATGTGGTCATCAAATGTGGTCTTTCTCCTCAATCGCT
TGTGGTTGAAAGGTGCTGAATCACCAAGACTTTCATCGACCTCATCATCAAAACCAGCTGATGTGCTTGGCTTTTCTTCT
TCATCTTCGTCATCAAACAAAGGAACCCTCGGCGGGTTTAGCTCAGGCGCACCCTCAGTGGGCGACTTCATAGTCGAAGG
GACCACTGATTCCCAAATCCCAAATTTGCCCATTACATCAATGAGTACTATAGCATTATCCTCCGGTTTCCATGCCATGC
TACATATCCTTTCATCAAACTTCTGCCTCTCAATGTCCTGCCTTGACTTCACATCCCAGACAAGCACCTGCCTATCCAGG
CTAGCAGTTGCCAGGTACCTCCCATTCGGGGACCAGCAAAGGCTGCATATTGGCTGCTCATGTTCTCCTTTCAGTGTGAA
TACCTCCTCCGCGGTGTCCCTGTCATACATGACCACATTATTCCTCAGCCCAGGAACAGCAAGGGTGTGCCCGTCGGGAC
TCCAACACAGGGTATTCTTCACTGAGTGGTCGGAACCGAATGTCGGGGCGACACGAGTCAAGCTTCGTGCCTCACTGCCC
AAACAAAGATCCCAAAAGATGACCGTGCCAAAGCTGTCGATTGATGCCAGATAATCATTTTTGGGGTCAAAAGCCAGCCC
GGTCACCGAGCCCTTGTGGCCTTTGAGCACCTTGGAGATCGTGTTGTCGACTGTAGCAATCAGCTTGATGCCGTCGTCAT
CGCCGGCCGCGGCCAAAAGGGCGCCCTTCTTGTTGAACGCCAGTGACCGGATCGGGAGGGTGAACCGAGCAACGTTGCTC
TGGAACGTGCCGTCTGGAAAGAAATCCGGAGACATTCACAGATCTCGAAGTGAAAACAAAAAATAAA-----TACTCAGA
TAAGACACCGCGCATCAGGACGGTCGGAACCACGAACCTGGGAAGGAGTAGAACTTGACGGAGTGGTCGATGGAGCCGGA
AGCCAGCGAGCCGCCGGAGCCCGGCGCGAGGGCGACGGCCGTGACGCCGTCCTTGTGGAGCCGGATCGTGGTGGCGGCCG
CCGCTGAACCGGAGCCCCGGGCCCCGGTCCCCCCGGCGCTCACGGCGGCGGCGTCGTGGATCAGGATGGCGATGTCGGCG
GCGGACGCGGTGACGACGTGCTGCCCCCCGGGGGCCCAGGCGACGGAGCAGAAGGCCGGGGAGCCGGAGCCCGCCTTGTG
CGCCTCCCGCAGCTTCACCGCGCGGCCTTTCATGGCGAGACCGC--GAGAGAGATGCTTCGCGTCCGAGGCTTCCTTGGT
GAGCTGGTG-GGGGATTTCGTGGGATTGGCCAAGATGCGGGGCGGGCGTTTTA-TGTTTCGATATGCTGGGGGCTAAACG
AGTGGCGCGAAATTTCAGGGGTTTCCCCGCGGGAAATGGTCCGCTGGCGGGAAGATGGTCTTACCGGTAGGACCCGCGCG
ACTCCTCGCGGAAAGCTTGCTTTC--CACCGTGGGCCAACGTTGGGCCGACCTGGCATTCCCCTTAGATCGAGTAATCTA
TTTATATAGATTTCTCAGAAAAAAATAC-ATGGTGAAAACTATTTTTATAGTAGTATGTAATATCTGTGTGCAATGTTCT
GACCATATTGTCATCAAGTATAAA
>chr5B_1
AAGATGCGCAAAAAATTTAAACTTGTGACTGCAGCAACCCATCCAGCACCAAGAGCCACAGACTTCACTTCTTCTCCCTC
AAACCTCATTGACCACTACAATTGGACATACATAAACACCCCTTGTTTAAGTAACCAGTAAATGTGAGCTGTATTAAAAC
ACTCTAATTCTTGAAGGGGCAGAACATTTATGTTAGAAGCAAAAAAACTCACCTCACTGTTACCAGCCCAGCTGCTGAAG
GGGCGGTACATAAGAGTGCTCATATTGTTGTCGCCCTTGCATGGATTTGCAAACACACTTCCTGATTCATTCAGTGCAGC
CATGGTGAAACCAAAATAGTCGGTCATGGAAGGGACTCTGGGGCCTCTTCCTGTGTCGTGAAAGTCAACCTGGAAAATGA
TTATAAATGTCACAACTTCGGCAGAGAGCCAATAAAACAGTATAACTTCAGATAGTTTATTCAGTGGCTTATGAAGCAAA
CAACTGAAAAGGGGATCTTACCTCTACATGTGAGTGCCCCTCATTTTCAATGGTAGTAATACTTCCAAGCATGTTGTAAG
CAAGGAAATTTCGCTTGCCAGGATGAGATGGCGTTGACCCAGGCTGGAAGGCAGCTTGCATTCTTGCTGTAACCAACCTT
CCAGAAGTTGCTGAATCATCCATTGCCTTCCTAGCACCTTCTTTGTTATCTTTGTGCCTACCTTTTGTTCTCTTTCCTGA
CTGCATCTCGTGTATCATATCCTCTTCTTCACTATCTCCATTCACGTGGTCATCAAATGTGGCCTTTCTCCTTGACCGCT
TGTGGTTGAAAGGTGCTGAATCACCAAGACTTTCATCGATCTCATCATCAAAACCAGCCGATGTGCTTGGCTTTTCTTCT
TCATCTTCGTCATCAAACAATGGAACCCTCGGCGGGTTTAGCTCAGGCGCACCCTCAGTGGGCGACTTCATAGTCGAAGG
GACCACTGATTCCCAAATCCCAAATTTACCCATTACATCAATGAGTACTATAGCATTATCCTCTGGTTTCCATGCCATGC
TACATATGCTTTCATCAAACTTCTGCCTCTCAATGTCCTGCCTTGACTTCACATCCCAGACAAGCACCTGCCTATCCAGG
CCGGCAGTTGCCAGGTACCTCCCATTCGGGGACCAGCAAAGGCTGCATATTGGCTGCTCGTGTTCTCCTTTCAGTGTGAA
TACCTCCTCCGCTGTGTCCCTGTCATACATGACCACATTATTCCTCAGCCCAGGAACAGCAAGGGTGTGCCCATCGGGAC
TCCAACACAGGGTATTCTTCACCGAGTGGTCGGAACCGAATGTCGGGGCGACACGAGTCAAGCTTCGTGCCTCGCTGCCC
AAACAAAGATCCCAAAAGATGACCGTGCCAAAGCTGTCGATTGATGCCAGATAATCATTTTTGGGGTCAAAAGCCAGCCC
GGTCACCGAGCCCTTGTGGCCTTTGAGCACCTTGGAGATCGTGTTGTCGACCGTAGCAATCAGCTTGATGCCGTCGTCAT
CGCCGGCCGCGGCCAAAAGGGCGCCCTTCTTGTTGAACGCCAGTGACCGGATCGGGAGGGTGAACCGAGCAACGTTGCTC
TGGAACGTGCCGTCTAGAAAGAAATTCGGAGACATTTACAGATCTCGAAGTGAAAACTAAAATATACTGTACTACTAAGA
TAAGATATCGCGCATCAGGACGGTCAGAACCACGAACCTGGGAAGGAGTAGAACTTGACGGAGTGGTCGATGGAACCGGA
CGCCAGCGAGCCGCCGGAGGCCGGCGCGAGGGCGACGGCCGTCACGCCGTCCTTGTGGAGCCGGATCGTGGCGACGGCCG
CCGCTGAACCGGAGCCCCGGGCCCCGGTGCCCCCGGCGCTCACCGCGGCGGCGTCGTGGATCAGGATGGCGACGTCGGCG
GCGGACGCGGTGACGACGTGCTGCCCCCCGGGGGCCCAGGCGACGGAGCAGAAGGCCGGGGAGCCCGAGCCCGCCTTGTG
CGCCTCCCGCAGCTTCACCGCGCGCCCTTTCATGGCGACACCGCGAGAGAGAGATGCTTCGTGTTCGAGGTTTTCTTGGT
GAGCTGC--TGGGGATTTAGCGAGATTGGCCAAGATGCGGGGCGAGCGT-TTA-TGTTTCGATGTGCT-GGGGCTAAACG
AGTGGCGCGAAATTTCGGGGGTTTTCCCGCGGGAAATGGTCCGCTGGCGGGAAGATGGTCTTACC----GGACCCGCGCG
ACTCCTCGCGGAAAGCTAACTATCAACACCGTGGGCCAACGTTGGGCCGACCTGGCATTCCCCTTAGATCGAGTAATCTA
TTTATATAGATTTCTCAAAAAAAAATTATATAGTGAAAACTATTTTTATAGTATGTAATATATC---TGTGCAATGTTCT
GACCATATTGTCATCAAGTATAAA
>SNPs
--------------------------------------------------------------------------------
-------------------------S----------------------S--------S----S-------SS--------
S--------------------------------------S------S---------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------------S------S------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------S-------------------------------------------------
----------------------------------------------------------------------S---------
--S------------------------------S----------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S--------------------------------------------------------S----------
----S--------------------------S-----------S------------------------------------
--------------------------------------------------------------------------------
------S-----------S-------------------------------------------------------------
-------S-----------------------------------------------------------S------------
------------------------------------------------------------------SS---------S--
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---S-------------------------------------------SSS--------------------------
-----------------------------------------------------------------S--------------
---------------------S--------------------------S----S----SS-----S--------------
---S----------------S--------------------------------------------S----------S---
------------------------
>forward_914
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAACAATGGAACCCTCGGCA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_2134
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTGTTTCGATATGCTGGGGC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
