>input_sequence_81006
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-----------------------------------------------------------------------------ATG
GCGCACCACGTGCCATCCAACTCTCTCATACTTCTCCTGGTCCTCGCCTCCATCCAAGCCGGCAGAGGTGCGACGTCGCG
TCCATCGCCGGCCCCGGCGGGATACGTGCCGGTTCGCGCCGTGGTGTACCGATCGGTGGCGCTCCCGGCCGCGAGGGTAG
CCGCCGCCGGGGACGAGGCGCCGGGCGGAGGAAGGTACGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCGCGGCG
GCAGGGAGCGGCAGCAACGCCAGCGCGAGCAGCTCATGCGTGGACACGCGGTGCTGCTACGCCATCGACTGCAACGTCCC
CGGCAAGCCCTTCGGCGTCTGCGCCTTCTCCCCACGCACATGCGGCTGCGGCGCCGACGCCGGCGCCGGCAACAACTGCA
CCGCCACCTAG---------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G123700
TGTGAAACATATGTGGACCTAGAATGAAAACCAAAGAACTAATGTTTGAGTTGTGCACTTAAAATAAATTTTATATAAGA
ACTATCTATTTTTGGTACCAACATTTGTTATTCACGTGCGACATTGTGTACTCCCTCCGTTCCCAAATATAAGTCTTTCA
AGAGATACCAACAAGTAACTCCATAAGAAGCGAAATGAGTGAATCTACACTTCAAAATATGTCTACATACATCTATACGT
TGTAGTCCATTTGAAATGTCTAAAAAGACTTATATTTATTATTTAGGAACAAAAGGAGTATGATGTAGTGTATGGATTTG
CATGGATTGGAAAGTCCGGATTTAATATACGTGGATGTCGGGCAGG----------GGCCGTCCGAGTGCGTCCTCCGAC
GTGACGTA-----------------TCCACGGATCGTATAGGAGGCCGGATTTGTCGGCTGTAGAC-------GCTCTAA
CACACCCGAAATGATCTCC-TTGTAGTACATGTGGAGTTGCTGCCCTGCCAAACTCCATTTGCTCTGTTTGGATACTCTA
ACTCAGTTAGAGGTTAGAGTTAGATTCTAACCCTAAACTAACTCTGAACTAACTCTAACCAAAGAGGTGTTTGGATGACA
GGGTTAGATGAAGCGCGGATATGGCCAAGCGCCTTCACGAACATTGTGAGAGGGAGGGAGGAATAGGACGAGAAGCTTCG
AGGAAGTGTGGAGGGATCTGTTGCGGAGAGAGCGAGAGAAAAATGTGTTTTTTAGTGCTCCTGAGAAGACTAACCCAAAT
AAGCACCTCTTGGGTGGGTTAGATTTTTAGATGGGTTAGATGCATCTAACCCAATCTAACCCTCCTGTTCGGATACTTTT
GGGTTAGTTGAGTCCAAACTAATGCAAACTAACTCTAACCCATGGATCCAAACAGACCATTGTCACTTGGCTAGTTGGCT
AGTCCCCAAAAGGGTGCAGC-TTGCTTATTTTCCTCTCCTTCCCAG-TTTCATCCTCCACAAGCCCACAAGACAAGCATG
GCGCACCACGTGCCATCCAACTCTCTCATACTTCTCCTGGTCCTCGCCTCCATCCAAGCCGGCAGAGGTGCGACGTCGCG
TCCATCGCCGGCCCCGGCGGGATACGTGCCGGTTCGCGCCGTGGTGTACCGATCGGTGGCGCTCCCGGCCGCGAGGGTAG
CCGCCGCCGGGGACGAGGCGCCGGGCGGAGGAAGGTACGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCGCGGCG
GCAGGGAGCGGCAGCAACGCCAGCGCGAGCAGCTCATGCGTGGACACGCGGTGCTGCTACGCCATCGACTGCAACGTCCC
CGGCAAGCCCTTCGGCGTCTGCGCCTTCTCCCCACGCACATGCGGCTGCGGCGCCGACGCCGGCGCCGGCAACAACTGCA
CCGCCACCTAGGGACACCGATCGCCCTCGTCAC-----------CGATCGTCCTCATCAACCTGCTAGCTGTTTTCGACA
TGCTATTACTTTTACTTCGATTTGG-AAAAAGGTTATATGCCTACCAAATGGCACTGCAGATATAGCTCACGATTTGTTT
TTCATTTCTTTGTACTACCGATGTCAATTCTTTTGGGTACTGTCGAAATAATTTCTACTCGTCTCTAGAGAGTTGGCAGC
AGTTGTATTTGACCGATTTTGCCCCCTTCCCTTTTCTGCCGAACA-AAAATTTCGTTGTTGACTCGTTGCAAAGCATCGC
AAGATA----GACAGGTACCAGTACCTAACCTTCACTTTCCAAAGCACTGACTCTTGCACGCACCCAAGAAAAAAAGTTG
CTCTGACTATGACTGCACTTAGATGCCAATACGAGCATATATGAAGCATCCGTCAATAATTGTGCAATCGTGCATGGTCC
GTCATTTGATGCCAAGTGGCACGACGACATATGCACCAAATCTCCC---ATCAAATGCCAATAAGCTCTGGCTAGCACTC
AAGCCTCCCTCTGCTTTTTCCAATCAAATATCAAATCTTTTCCTTTCCTTTATTATCCAAAACCAAAATCAATGGGGAAA
TAAATTTGATTGGCACGTAAGGGAGAATAACCAGCCCAATAGTATATTCTTACGAGTTACGACGAACAAGTGATCTCCCG
ATACCACTACATCAGATGTGCGATATATTCTTACGATGAAGCAATACCACCACATCAGATTTGGACTGGACGCTACCAGG
TCCGTGGAGAATAAGAACCACAACGCGCAATCAAGGACAAGCAGTCACAAGGCTTAT-TTAGGCAAGAGTGGCAGTGGAT
GAAAATTAGAGTTCATC-------------------------AGAAAAGAGCGAGGTACTCGGTGGCCTCATGAGCCATT
TCTTCCATGCTTCTATCTTTTCTTTCGACATCTAGGTCAAGCTTCTCCTTCATTTCCTTCTCTTTCACTTTCACGTCAGT
CTGTTACAAGGCAAAAT
>chr4D_1
TGTGAAGTATATGTGGACCTACAATGGAAACAAAAGAACTAATGTTTGAGTTGTGCACTTAGAATAAATTTTATATAAGA
ACTATGTATTTTTGGTATCAACATTTATTATTTACGTATGACATTGACGT------------------------------
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---------------------------------------------------------GTATGATGTAGTGTATGGATTGG
AGAGTCCAGA------------TAAGATATATGGATGTCGGGCACGAGACATGGGAGGCCGTCCGGATGCGTCCTTCGGC
GTGTCCGGACGCGTGTCCGGACGCGTCCACGGATCGTATAGGAGGCCGGATCTTTCAAGTACGGCTGTATGATGCTCTAA
CACACCCGAAATGATCTCCGTTATAGTACATGTGGAGTTGCTGTCCAGTCCTGCCAACC---------------------
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--------------------------------------------------------CCATTGTCACTTGGCTAGTTGGCT
AGACCCAAAAAGGGTGCAGC-TTGCTTATTTTCCTCTTCTTCCCAG-TTCCATCCTCCCCAAGCCCAGG---CAGGCATG
GCGCACCACGCGCCGTCCAACGCTCTCATACTCCTCCTGGTCCTCGCCTCCATCCAAGCCGGCAGAGGTGCGACGTCGCG
TTCATCGCCGGCGGA------ATACGTGCCGGTTCGCGCCGTGGTGTACCGATCGGTGGCGCTCCCGGTCGCGACGGTAG
CTGCCGCCGGGGACGAGGTGCCGGGCGGAGGAAGTTACGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCGCGGCG
GCAGGGAGCGGCAGCAACGCCAGCGCGAGCAGCTCATGCGTGGACACGCGGTGCTGCTACGCCATCGACTGCAACGTCCC
CGGCAAGCCCTTCGGCGTCTGCGCCTTCTCCCCCCGCACATGCGGCTGCGGCGCCGACGCCGGCGCCGGCAACAACTGCA
CCACCACCTAGGGACACCGATCACCCTCGTCACCGATCATCCTCATC----------CAACCTGCTAGCTGTTTTCGACA
TGCTATTACTTTTACTTCAATTTGGAAAAAAGGTTATATGCCTACAAAATGGCACTGCAGATATAGCTCACGATTTGTTT
TTCATTTCCTTGTACTACTGGTGTCAATTCTTTTGGGTACTGTCGAAATAATTT-TACTCGTCTCTAGAGAGTTGGCAGC
TGTTGTATTTGACTCATTTTGCCTCCTTTTCT-----GCGGAAACGAAAATTTCGGTGTTGACTCGTTGCAAAGCATCGC
AAGATA----GACAGGTACCAGTACCTAACCTTCACTTTCCAAAGCACTGAATCTTGCACGCACCCAAGAAAAAAAGTTG
CACTGACTATGACTGCACTTAGATGCCAATACGAGCATATATGAAGCATCCGTCAATAATTGTGCTGTCGTGCATGGTC-
---ATTTGATGCCAAGTGGCACGACGACATATGCACCAAATCTCCATCAATCAAATGCCAGTAAGCTCTGGCTAGCACTC
AAGCCTCCCTCTGCTTTTTCCAATCAAATATCAAATCTTTTCCTTCCCTTTATTCTCCAAAACGAAAATCATTGGGGAAA
TAAATTCGATTGGCACACAAGGGAGAATGACCAGTGCGATATATTC----------TTACGACGAACAAGTGATCTCCTG
ATACCACTACATCAGATGTGCGGTAGATTCTTACGACGAAGCGATACCAGCACATCAGATTTGGACTGGACGCTACCAGG
TCCGTGGAGAATAAGAGCCACACCGCGCAATCAAGGACAAGCAGTCACAAGGCTTATTTTAGGCAAGAGTGGCAGCGGAT
GATAATTAGAGAGTTCATCAGAAATACATCTATCTGGCTAGGAGAAAAGAGCGCGGTACTCGGTGGCCTCATGAGCCATT
TCTTCCATGCTTCTATCTTTTCTTTCGACGTCCAGGTCAAGCTTCTCCTTCATTTCCTTCTCTTTCAC------GTCAAT
CTGTTACAAGGCAAAAT
>chr4A_920
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--------------------------------------------------------------------------TTTGCT
AGCTCCAAAAAGGGTGCAGCTTTGCTTATTTTCCTCTCCTTCCCTATTTGCATCCTCCCCAAGCCCAGG---CAGGCATG
GCGCACCACGCGCCGTCCAACTCTCTCATACTCTTCCTGGTCCTCACTTCCATCCAAGACGGCAGAGGTGCGACGTCGCG
TCCATCGCCGGCGCCGGCGGGATACGTGCCGGTTCGCGCCGTGGTGTACCGATCGGTGGCGCTCCCGGCCGCGACGGTAG
CCGCCGCCGGGGACGAGGCGCCGGGCGGAGGAAGTTACGAGCCGTTCCAGCTGTGCATGGGGTGCCGGTGCTGCGCGGCG
GCAGGGAGCGGCG---------GCGCGAGCAGCTCATGCGTGGACACGCGGTGCTGCTACGCCATCGACTGCAACGTCCC
CGGCAAGCCCTTCGGCGTCTGCGCCTTCTCCCCCCGCACATGCGGCTGCGGCGCCGGCGCCGGCGCCGGCAACAACTGCA
CCGCCACCTAGGGACACCGATCAGCCTCGTCACCGTTCAGCCAACGATCGTCCTCATCAACCTGCTAGCTGTTTTCGACA
CGCTATTACTTTTACTTCAATTTGGAAAAAAGGTTATATGCCTACCAAATGGCACTGCAGATATAGCTCAAGATTTGTTT
TTTATTTCCTTGTATTACTGATGTCAATTCTTTTGGGTACTGTCGAAATAATTT-TGCTCGTCTCTAGAGAGTTGGCAGC
TGTTGCATTTGACTCATTTTGCCCCCTTCTCT-----GCCGAACA-AAAATTTCGTTGTTGACTCGTTGCAAAGCATCGC
AAGATAGAGAGACAGGTACCAGTACCTAACCTTCACTTTCCAAAGCACTGACTCTTGCACGCACC-AAAAAAAAAAGTTG
CACTGACTATGACTGCACTCATGTGCCTATACGGGCATATATGAGTCACCCGTCAATAATTGTGCAATCGTGCATGGTC-
---ATTTGATGCCAAGTGGCACGACGAAATATGCACCAAATCTCCATCAATCAAATGCCAGTAAGCTCTGGCTAGCACTC
AAGCCTCCCTCTGCTTTTTCCAATCAAAAATCAAATCTTTTCCTTCCCTTTATTCTCCAAAACGAAAATCATTGGGGAAA
TAAATTCGATTGGCACGCAAGGGAGAATGGCCAGTGCGATATATTC----------TTACGACGAACAAGTGATCTCCCG
ACACCACTACATCAGATGTGCGATATATTCTTACGACAAAGCGATACCTCCACATCAGATTTGGACTGGACGCTACCAGG
TCCGTGGAGAATAAGAACCACACCGCGCAATCAAGGACAAGCAGTCGCAAGGCTTATTTTAGGCAAGAGTGGCAACGGAT
GAAAATTAGAGAGTTCATCAGAAATACATTTATCTGGCTAGGAGAAAAGAGCGCGGTACTCGGTGGCCTCATGAGCCATT
TCTTCCATGCTTCTATCTTTTCTTTCAACGTCCAGGTCAAGCTTCTCCTTCATTTCCTTCTCTTTCAC------GTCAAT
CTGTTACAAGGCAAAAT
>SNPs
------SS-------------S----S----S-----------------------------S------------------
-----S-----------S--------S-----S----SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S-
SSS-SSSS-SSSSSSSSSSSSS---S---SS-------------S--------------------SS--------S--S-
---S-SSS-------------------------------------------S-S--SSS-SSS-SS--------------
----------------------S--------------------S--S-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
--S---S------------------------------------------S--------S--------SSSSS--S-----
----------S---S-----------------S-----------------------------------------------
------------S-------------------------------------------------------------S-----
----------------------------------S---------------------------------------------
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---------------------------------S----------------------------------------------
----------------------S---------------------------------------------------------
------------------S-------------------------------------------------------------
--------S---------S-----------------------------------S-------------------------
S------------SS--------------S--SSSSS-------------------------------------------
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-S-----------------------------------------------------------------------------S
SSS------------------------------------------S--------------S-------------------
---------------------------------------------S--------S--------S-------S--------
------S----------S----------S-----SS-S---SSS-SSSSSSSSSSS------------------------
------------------------------------S-----S-------------------------------------
----------------------S----------------------------------------------------S----
-----------SSSSSS------------------------------------S--------------------------
-----------------------------S--S-----------------------------------SSSSSS----S-
-----------------
>forward_542
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------------------------------------------GCCCTGCCAAACTCCATTTG------------------
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>reverse_1694
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-------------CGATTTTGCCCCCTTCCCTT-----------------------------------------------
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