>input_sequence_80986
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-----------------ATGGCTGCAGGTGGGGCTTCTCTTCTTG---CTGCTG---------CTGTTTTCTCCATGCTG
GTCATGTCTTCCCTGGGGTATCCGAGGCCTCTATGCAGCGACTGTGAC----CCGCAATGCCATGCGAACTGCACCGCTG
AGGTTAAAACCTCCTGCAGCAGTTACTGCAGCGGCGGTGGTGGCGGCCCTCGGGAGGGCTGCCGTAGAAATATCTTGCGG
CAGTGCATTGCAAATGGTATCTGCTGCAGTAGCAACGGCACCTGCACTTGTGACTGCAACGTTGTAGCTGAAAGTGGTTG
CAAGGGGGTCACCGACGCCACCCAACTTTGCGACCCTTGCATGCGCGGCATCTTCGGCAAGTGCTTTCCCACCTGTAAAA
AGGACTGCAACAACAACTGCAAGAAGAA---AGGGTGCCACCATGCCTAG------------------------------
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---------------
>chr3A_1_TraesCS3A01G003200
TTGGAGATGTTCAAGATAGTCCATGGAATTGTATTTTGCAGGATTTTTTTTGATCTATTCATCATTTGTCATGGCAATAC
AGAGAACACCAAAAGTAAAAAAAAATACATCGAGGTTCGTAGACCATCTAGTGAAAAATACAAGCACTGGAGCAAACCGA
AGGCGTGTCGAC------------------------------AAATTATAGTAGATAGTCGAAAAGTCGTCATGCTAAGG
CCCCACTAGACTAGCAGACGAGAATAGCAACCGCCATCGATGAAGAGAAGTGTAGAGCGAAAGGATCGAACATGTACACA
CATGAGTAAAGACGGACGAAGACTGCATCCAAGGGGATCCGATAAAGACCAGCAGTGACTGAATCATGTGAGATCCGCTA
GAGACGCTCCTCCACACGCTCTTCAACGGTGTT--AGATACACCGCCTGTGGACGGGTTAGACGGGGAGAATTTTATTTC
ATCTTCAAGGAGCCGCTGCCATCACACCTTTCTGAGTAGGACAAAAATCCTACTCGAACGGTAAAAGAAAAAACATCTAA
----------AAATCCGTCTCCCGGCAAGGGCTGAGGTCCAGCGCGCCTCTGTAGCCTTAAGGGCACAAGACAGACGAGG
CGGACTGGCAGGGGAGCTGACGGGAGGCAGACGAAACCATAGCCGCCTGTCCGCCTTTCTTTTCTTCCACGGGAAGAAAG
AAAAGACCGATAACAGCCGATCCATTGACAGTCCACGCAATTAATGAAGAGGTGAAGCCAACTTGTAACATTTCTTATTA
GCGAAAAAATTGTACTAACATGGAGCAGTTTACATTAATTAGATCTACGTACTCAAGTTTAGATCTACTCCCTCCGTCCG
GTGACATCAAGTATGTAAGCTCAACTGG----------------------------------------------------
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------AAGCTAGC----TAGCCTATAAATAGCATC---AGCCGCTCCATCATAT---------AGTCACCAGCTAGCTT
ATTCACATCTCT--TACCTTGAGACTTTCTCTTGCTCCACATATTTAC--------CTC-----T----CTAGCT--ACA
AAGCTTGCTGGGCAGCAATGGCTGCAGGTGGGGCTTCTCTTCTTG---CTGCTG---------CTGTTTTCTCCATGCTG
GTCATGTCTTCCCTGGGGTATCCGAGGCCTCTATGCAGCGACTGTGAC----CCGCAATGCCATGCGAACTGCACCGCTG
AGGTTAAAACCTCCTGCAGCAGTTACTGCAGCGGCGGTGGTGGCGGCCCTCGGGAGGGCTGCCGTAGAAATATCTTGCGG
CAGTGCATTGCAAATGGTATCTGCTGCAGTAGCAACGGCACCTGCACTTGTGACTGCAACGTTGTAGCTGAAAGTGGTTG
CAAGGGGGTCACCGACGCCACCCAACTTTGCGACCCTTGCATGCGCGGCATCTTCGGCAAGTGCTTTCCCACCTGTAAAA
AGGACTGCAACAACAACTGCAAGAAGAA---AGGGTGCCACCATGCCTAGGTAGGAATA--ACAGGTAATCGAT----CT
GGTGCCTTGC----ATAGCAAATAACATTGCTCGCTGTGGTCGTGCGTA----GATTTTTGTATATGCCGTGACCTGGTT
CTGTAGGATGGCACAGGAGGAAAG----GGTCGTGGCT-ATCACCTCCGGCGTTTCAGCTGAGGATTTGCATCCTGTTTT
ATCTATA-----------CTGAATAATAATATG-GAAAAACAAAGAAATTTCACAGAGTTGACACGGTGTGAAAT--TAT
GGTTGTTCAGTGTTCCTTCG------------------------------------------------------------
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-------------------------------------------------------------------------------C
CATAGAGCTTG----------------------T--------------------------------CCATCCAACTATGC
ATCTGTGCGTCGTTGTAGACTTTAAGTATCCAAGAATACTTCATGGTGATGTGTGCCTTCGCCATGCCGTTTACTCTCTT
TCATTGTTGAGAAAACTGTAC-TTTTCTATTTAAATCACCTTCTGCTGATGATTAGAATGCTTTCAACCACACATGTATA
TAACCAATTTTTCAACCAAAGT----------------------------------------------------------
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---------------------------------------ATGGATTAGCCACTTCAACAGCAGTGTGCTTGTGCTCGAAC
ATCCTGAACATCTTTAGCGATGTGTACTCTCTCTTTACCTGTATTCCATTTTTTGCATGGATATTCTACTCCATGTTAAG
CAACGATTCAGTTCAATTTAGTTAGATTAATCTGCTGCTATCTAGTTTTGTACAGACAGCCATGGATACCTTAGCCTCAT
AACTCGTTAGGGACTGTAAGGTGATGTCGTATCTGCATCTTACTTTTGAAAGACCACATCAATTTGCAGCAGCACATGTT
AAAACTGTGATCTTTTGGAGATGTTATGTTTTAACTTTGATGTTCTCACACACCGGCTATCAGGTTTCATCACCTCCACC
TGCAGTGCTTCACTGGCATTGAGAACGAAGTGCCTGTATCTTTTTTTCTT-TTTCTTTTTTCCATTTTTGGCTAGGACAG
TTGAGTTCACATTTCATATTTGTTCGGGTTGGAAGTTAAGATATTTGCAGTTGAAAGTAGGCTTGGTCGGCATATGTGAT
AGATTTAGTCGAATG
>chr3B_1
TTGGAGATGTTCAAGATAGTCCATGGAATTGTTTTTTGCGGAAAAATTTCCAATCTATCCATCATCTGTCATGCCAATAC
AAAGAACATCAGAAGT--AAAAAAATACATCCAGGTACGTAGACCATCTAGTGACAAATACAAGCATTGGAGCGAAACGA
CGTGTCGCCATAATCGCCCCTCCCTCACCATGGTTGGGAAAAAAATTGTAGTAGATAGTCGAAAAGACGCCCTGAAAATG
CCCCACGAGACCAGCAGATCAGAATAGCATCCGATGTCGATGAAGAGAAGTATAGAGCGAAAGGATCCAACATGTACACT
CATGAGTAAAGATGAACAAAGATTGATTCCAAGGGGATCTGATGAAGACCAACACTGACTGAATCATGTGAGATCCGCTG
GAGACACTCCTCCACACGCTCTTCAACGACCCCCAAGATGCACCACCTAGAGGCGGGTTAGGCGGGCAGGACAAAAA---
------------------CCATCAGACCTTTCTGAGCAGGACAAAAACCCTACTCAAACGGCCCAAAAAAAGCACCTAAA
AACAACGAAGAAACCCTTCTCATCGCAAGGGCCGAGGTCCAACGCGCCTCCAAGACCTTAATACCACCGG--AGACGAAG
CAGACCGGCAGCGGAGCCGGAGGGAGGCAGATGAAACCATAGCCGCCTGTTTGCATTTCTTTTCTTCCACGGGAAGAAAG
AAAT-ACCGATAACAGCCGACCCATTGACAGTCCACACAATTAATGAATAGGTGAAGCCAACTTGTAACATTTTTTAGCT
AAATTG---------TAACATGGAGCAGCTTACATTAGG----TCTACGTACTCAAGTATAT------------------
----------GTACGTACGCTCCAATCG----------------------------------------------------
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------AAGCTAGC----TAGCCTATAAATACTATC---AGTCGCTCCATCATAT---------AGTCACCAGCTAGCTT
ATTCACACCACT--TACCTTGAGACCTTCTCTTGCTCCACATATTTAC--------CTC-----TCTCTCTAGCT--AAA
AACCTTGCTGGGCAACAATGGCTGCAGGTGGGGCTTCTCTTCTTG---CTGCTG---------TTGTTTTCTCCATGCTG
GTCATGTCTTCCCTGGGGCGTCCGAGGCCTTTATGCAGTGACTGTGAC----ACACAATGTCGTGCCAACTGCACTGCAG
AGGTTAAAACCTCCTGCAGCAGTTACTGCAGCGGCGGTGGCGGCGGCCCTCGGGAGGGCTGCCGTAGAAATATCTTGCAG
CAGTGCACTGCAAATGGTATCTGCTGCAGTAGCAACGGCACCTGCACTTGTGACTGCAACACTGTAGCTGAAAGTGGTTG
CAAGGGGGTCACCGACGCCACCCAACTTTGCGACCCTTGCATGCGCGGCATCTTCGACCAGTGCTTTCCCACCTGTAACA
AGGACTGCAACAACAACTGCAAGAAGAA---AGGGTGCCACCATGCCTAGGTAGGGATA--ACATGTAATTGATCGGTTG
-----CTTGC----ATAGCAAATAACATGGCTCGCTGTGGTCGTGCGTA----GATTTTTGTAACTGCCGTGAGCTGGTT
CTATGGGATGGCA---------------GGTCGTGTCT-ATCACCTCCGGCGTTTCAGCTGAGGATTTGCATTCTGTTTT
ATTTATA-----------CTGAATAATAATATG-GAAAAAGAAAGAAATTTGACAAAGTTAATACGATGTTATTTGCTAT
GTATGTTCAATGTTCCTTCG------------------------------------------------------------
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-------------------------------------------------------------------------------C
CATAGAGCTTG----------------------TGTGCGTTCATTGACTTGTATACATCAGCTTGTCCATCTAAGTACGC
ATTCGTACGTCGCTGTAGACTTGTAT----------------------ATGTGCGCCTTCCCCATGCCATTTACTCTTTT
TCATTGTCGAGGAAACTGCAC-TTTTCTATGTAAATCACCTTCTG-----------------------------------
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>chr3D_849
TCATATCTCTTATCTTGAGACCTTCACAT---------------------------------------------------
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------------------GCTCCACTTATCTACCTCTCTAGCAAGGTGTAAACAAAGCTTGCCCAGCCACAATGGCTACC
AGTAGAGCTTCTCTTCTTGCCGTCGTTGCTGTTTTCTCAATGCTATTCATGTCTTCCCTGGGGAATCCAAGGCCTTTATG
CAGCGATTGTGACCCGCAATGCACTACCAACTGCACCGCGGAGGCTAAAATCCCCTGCAGAAGCTACTGTGACTTCAGCC
CTCAGCGGGAGTGTGAGAGGCAGGTCTTCGGGCGGTGCACCGAAGATGGTATCTGCTGCAGTAGCAACGGCACGTGCACT
TGTGACTGCGACACCGTAGCAAAGAACGGTTGCGAACGGGTCAGCGACAACTCCAGAAATTGCCATGCTTGCACGGGCGG
CATCATTGGCCAGTGTTATCACCCCTGTTACAATGACTGCAGCCACAACTGCAAGAAGAAAGGGTGCCACCATGCATAGG
AATAATAACATGTAATTGGGTGCCAACACTGCATATGAAACAGCATGACTCATTGTCCAGGTTATGTGGGATTGCACACG
AAAAAAGGGTTGTGGTGCATTACCTCCAGCATTTAGCTGAGGATTTGCATTCTGTTTATGTATGCTGAATAATAGGAAGA
AAAAAAATCACAAAGTTACTATGATGTGATCTAATGGTTGTTCAATGTTCCTTCTTCCATAGAGCTCGTGTGTGTGTGTT
CATTGGCTTGTATGCATCAGCTTCCATAGAGACTGGCTGTTGCCCACAGAAGGAAAGCTGATGTACTGTATTGTTGCTGA
CATTTATGTTGAACAAAGCGTGCCACCTAAGATATTTATAACTACATGCCAATTTCCCTCTTTATGTTTAAGCTTTTAGA
TATGTACAGATATAATGATAAGTGTGTATTTGTTCCAACAATAGGTCTTCTACGTATAGACAGTGTTTAATAAGGAGTAA
CATAGTGATCATCATTCGGATCAATCCAATATCTACATCTGGGAAGGTTAAAATACAGCTTCTACAATGGGGAAGCTGCC
AGGTTTTTCTCCTTGATGGCCTCCTGGACAGACTTCAGGAGTGATGGCATCAGTGTACTGCCTTGTGAGGGTTATGAGCT
TGGACTCATGGAGGCATGCCAGGCCCAAGCAATCGTGTTCAACATCTCTCAAGATCCTTGGCTGCCAGGTTCCCAATGAT
TGTGGAGAGCATCCTCAGCGGCACTCCATGGAGGATTGCCAAGCCCGCGGCCTTTGAGCATTACTTGCATGAGGAATGCC
TAGTCACCAATGTTCTTCCGCTTGAGCTGCGGCCAATCAAGGCGCCTCTTTGTTGGTCTCCCGCACCACCCACGCCTGTG
TGATCCCTCTTGCCACGGCATGGTCTGCACCGTTGGAATCTCCGTCGCATGCTGATTGGGCTGCTCAAGTCCCAATTAAG
TTAAGTCAGTTCATGCATCCATGGGCAGAGCTACCCAAGGATTTGGGTGTACAAGTGTACACCCATTATTTTGACAATTA
CTTTTAATACCATATATAATTCACATATATGGAACAATATACATCGAATAAATGAGGAAATGTGAGTATAGATAGAAATT
TTAGGGGACTATGTACGCCCATTCTTTTGATGTTAGCATGCATCTGAGCAGCAGGAGTAGTCAAGTAGAGTCGGCTTGCA
TGTTAGTAGGAATCTTTTCTACTATTAAGTCAAGTGCATGATGTCACTGCGCTAATGGATGCATGACGCACTTGAAGTTC
CTTCGTCCCCAAAATATCATGTGACATGATTGAACCTGTGACTCACGCAAGCCGCGTCACCCTATTTGCAGTTTACTACT
GTACTATGCAAGATTAATGTATATAAATCAAGACGGCAAAATAGAAAGACGGGTGCATGCGACTTTGGCTAAGGAAGACA
AAATGGGATCTGGACAGTACAAGCAATTAATGGGCACATTTACTTTGGTAAGATCTTGTCAAAAGTCAATGCTTGGTAAA
AGAAAAACTAGAACAATGCTAGTACATCCATGGTTGATCGTCAGCTAATTAATTTTACACACAGACGTGGCAGTTTTTGG
CTGGCCATCAGCTGGGAATGGAGGAGGTCCGTATGATTTCCATATGAATAAACCCACAGGTTTAGCACTTTTTTTAGGGT
ACAAAAACAACTACATATTGATCACTAATTCGGGTTACCAAGGCTTGTGTATTTAGTTGATCGTGCCATTCAAGTGGTTC
AAATCAGGAGTAAAACATAGACTTGAATATATTAGCCCTTTGGTCGGTGACCCACAAAAATGAAGTATAGTGGAAGTTCA
CATAGTGAAGTCAACTTGTAACATGGAGCAGTTTACATTTGATCTATGTACTCAAGCTCAGATCTATGTACGTATGCTAC
ACTAGAAAGCTAGC----TAGCCTATAAATAGTATC---AGCCGCTCCATCATAT---------AATCACCAGCTAGCTT
ATTCACATCTCTCTTATCTTGAGACCTTCTCTTGCTCCACATATTTACCTCTCACTCTC-----T----CTAGCT--ACA
AAGCTTGCTCAGCAACAATGGCTGCTGCTGGGGCCTCTCTTCTTG---CTGCTG---------TTGTTTTCTCCATGCTG
GTCATGTCTTCCCTGGGGCATCCGAGGCCTTTATGCAATGACTGTGAC----ACGCAATGCCGTGCCAACTGCACTGCAG
AGGTTAGAACCTCCTGCAGCAGTTACTGCAGCGGCGGCGGCGGCGGCCCTCGGGAGGGCTGCCGTAGAAATATCTTGCAG
CAGTGCACTGCAAATGGCATCTGCTGCAGTAGCAACGGCACCTGCACTTGTGACTGCAACGATGTAGCTGAAAGTGGTTG
CAAGGGGGTCAGCGACGACACCCAACATTGCGACCCTTGCAAACGCGGCATCTTCGACCAGTGCTTTCCCACCTGTAACG
AGGACTGCAACAACAACTGCAAGAAGAA---AGAGTGCCACCATGCCTAGGTAGGAATA--ACATGTAACCAAT----CT
GGTGCCTCGC----ATAGCAAATAACATGGCTTGTTGTGGTCGTGCATA----GATTTTGTTAAATTCCGCGACCTGGTT
CTGTGGGATGGCATAGGAGGAAAG----GGTCGTGGCT-ATCACCTTCGGCATTTCAGCTGAGGATTTGCATTTTGTTTT
ATTTATA-----------CTGAATAATAATATG-GAAAAAGAAAGAAATTTCACAAAGTTAATACGATGTTATTTGCCAT
GTATGTTCAATGTTCCTTCG------------------------------------------------------------
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-------------------------------------------------------------------------------C
CATAGAGCTTG----------------------T------------------ATACATCAGCTTGTCCATCCAAGTATGC
ATTTGTGCGTCGTTGTAGACTTGTAGTATCTAATAATATTTGATGCTGATGCGCGCCTTCGCCATGCCGTTTACTCTCTT
TCATTGTTGAGGAAACTGTAC-TTTTCTATGTAAATCACCTTCTGCTCATGATTAGAATGCTTTCAACCACACATTAATA
TAACCAATTTTTCTACTCCCTCCTTCCATATATATATATATATAGGGCCTAATACATTTTTCGAGGTTGACTTTGACTAT
TGATAAGATTAATAATATATTAGATGTATAATGTGAAAGTTATATCATTAGAAGCTCCTTCCATGTACGAATTTAATGAT
GTGCTATGTATAACTTGCATGTCATAAATTATTGCTCTAACATGTGGTCAAAGTTAGCCTTGAAAAACGCATTAGGCCCT
GTATGCATCGAAGGAGGGAGTACCAAAGTCAAGGCATGCATGGATTAGCCACTTCAACAGCACTGTGCTTGTGTTCGAAC
ATCCTCAACATCTTTAGCGATGTGTACCCACTCTTTACTTGTACTCCCTTTTTTGTGTGGATATTTTACTCCATGTTAAT
CGCCGATTCAAGTCAATTTGGTTAGATTAATCTGTTGCTATCTAGTTTTCTACAGACAGCCATGGATATCTTAGCCTCAT
AACTCGTTAGGGACTGTAGGGTGATGTCGTAGCTGTATCTTACTTTTGAAAGACCACATCAATTTGCAGCAGCACATGTT
AAAACTGTGATCTTTTGGAGATGTTATGTTTTAACTTTCATGTTCTCACAGATCGGCTACCACGTTTCATCACCTCCACC
TGCAGTGCTTTACTGGCACTGAGAAGGAAGTGGATGCAGCCTACATCTTTCTTTCTTTTTTGTATTTTTGGCTAGGACAG
TTGAGTTCAGATTTCATATTTGTTTGGGTTGGAAGTTAAGATATTTGCAGTTGAGAGTAGGCTTGGTTGGCATATGTGAT
AGATTTAGTTGAATG
>chr3B_850
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-----------TATGTACGCTCCACTCG----------------------------------------------------
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------AAGCTAGC----CAGCCTACAAATAGTAGTATAAGGCGCTGCATCATAT---------GGTCACCAGCTAGCTT
ATTCACATCTCT--TTCCTTGGGAGCCTCTCTCGCTCCACATATTTAC--------CTC-----T----CTAGCT--ACA
AAGCTTGCTCGGCAACAATGGCTGCAGGTGGGGCTTCTCTTCTTA---CTTTTG---------CTGTTTTTTCCATGCTG
GTCATGTCTTCCCTGGGGCATCCGAGGCCTTTATGCAGCGACTGTGGGTGGGACAGTATGCGGTACCAAATGCACTGCGG
ACGTTAAAACCTCCTGCAGCGATGACTGCAACGGCGGTG---------CTCGGGAGAGCTGCCGGAGCGGGGTCTTCCAG
CGGTGCACTGCAGAGGGTACGTGTTGCAGTAGCAACGGCACATGCACTTGTGACTGCAACACTGTAGCTCAAAGTCGTTG
CGTGGGGCTCGGCGATGGCTACACACGTTGTGAAGCTTGCACGCGTGGAAGATCTGACCAGTGCTATCGCATCTGTAACA
GTGACTGCAACAACAACTGCAAGAAGAA---AGGGTGACAT---GCA----TAGGAATG--ACATGTAAT--------CG
GTTGCCCTGC----ATAGGGAATAGCATGACTCATTGTAGTCGTGCGTA----GATTTTGTGAAC--CCACGACCTGGTT
TTGTGGGATGGCACAAGAGGATTT----GGTCGTGGCTCATAACCTCCAGCGTTTTAGCTGAGGATTTGCATTCTGTTT-
ATCAGTA-----------CTGAATAATA----------------------------------------------------
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>chr3A_858
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-------------------CTCTACTGG----------------------------------------------------
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------AAGCTTGCCCAGTAGCCTATAAATAGAATC---AGGTGCTCCATCATAC---------AGTCAGCAGCCATCTT
GTTCACATCTCT--TATCTTGAACCCTTCTCTTGCTCTACATATCTAGCTATC----TC-----T----CTAGCCACACA
AAGCTTGCTCGGCAACAATGGCTGCAGGTCGAGCTTCCTTTCTTGCTGCTGTTG---------CTGTTTTCTCCATGCTG
ATTATGTCGTCCCTGGGGAATCCGAAGCCTTTATGCAGTGACTGTGGG----ACGTTGTGCAGTACCAACTGCAACGCGG
AGGCTAACACCTCCTGCAACAC------CAGCGGTAACTGTTACAACCCTCGGGCGGACTGCCAGAAGCAGGTTTTCGAT
GGCTGCACCAGAGATGGTTTCTGCTGCAGCAGCAACGGCACCTGCACTTGTGACTGCAACACCGTAGCTCAAGAACGTTG
CAGCAGCGTTACCGACGGCTCTGTACGTTGTGATTCTTGCAAGCGTGCCATGTTCGACCAGTGCTATCCCACCTGTGTCA
GTGACTGCAACACCAAGTGCAAGAAAAA---AGGGTGCGAC---GCA----TAGGAATA--ACATGCAATCGATCGACCG
GGTGCCTTGC----ATGGGATATTACATGGCTCGTCGTAGTCATACGTATATCGATTTCTGTAGTCGCCATGACCTGGTT
TTGTGGAATGGCCCAGCAG----TAATGGGTCGTGGCACATCACCTCCAGCGCTTT------------------------
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>chr3B_858
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-------------------CTCCACTGC----------------------------------------------------
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------AAGCTAGC----TAGCCTATAAACAGTATC---AGGAGGCACACCATATCATATAGCAAGTCACCAGCTAGCTT
GTTCACATCTCC--AATCTTGACACCTTCTCTTGTTCCAGATATTCAC--------CTC-----T----CTAGCT--ACA
AAGCTTGCTCGGCAACAATGGCTGCAGGTGGAGCTCCTCTTCTTGTTGCTGTTG---------TTGTTTTCTCCATGCTG
ATCACGTCTTCCGTGGGGGTGCCGAGGCCTTTATGCAGCGAGTGCGAG----ACACAATGCCGTACCAACTGCACTGCGC
AGGTTGAAACCTCCTGCAGGGGTTACTGCACTAGTGGTGGCGGA---CCTCGATCGGGCTGCCGGAGATCCGTGTTTGAG
GATTGCAACGTAAAGGGTACCTGCTGCAGTAGCAACGGCACATGCACTTGTGACTGCAACACTGTGGCTGAAAGGGCTTG
CATGACCATCAGCGACGGCACCCTACAATGTGAACCTTGCCAGCGCAGCATATACAACCAGTGCGGTTCCACCTGTAGGA
ATGATTGCAACAACAACTGCAAGAAGAA---AGGGTGCCGCCATGCT----TAGGAATG--ACATGTAGTCGAT----CG
GCTGCCTTGC----ATAAGAAATAACATGGCTCGTTGTAGTCGTGCATA----GACTTTTGTAACCGCCATGACCTCGTT
CTGTGGGATGGCATAGAAGGAATTAATGGGTCGTGGCGCATCACCTCCGGCGTTTTAGCTGTGGATTTGCATTCTGTTT-
ATCTATA-----------CTGAATAATAATATG-AAAAACGAAAGAAATTTCACAAAGTTGACATGGTGTGAAAT--TAT
CGTTCTTCAATGTTC-TTCTTCCATGGAGCTTGT----------------------------------------------
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>chr3D_858
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-------------------CTCCACTGC----------------------------------------------------
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------AAGCTAGC----TAGCCTATAAATAGTATC---AGGAGGCACACCATATCATATAGCAAGTCACCAGCTAGCTT
GTTCACATCTCC--AATCTTGACACCTTCTCTTGCTCCAGATATTCAC--------CTC-----T----CTAGCT--ACA
AAGCTTGCTCGGCCACAATGGCTGCAGGTGGAGCACCTCTTCTTGTTGTTGTTG---------TTGTTTTCTCCATGCTG
ATCACGTCTTCCCTGGGGGGGCCGAGGCCTTTATGCAGCGAGTGTGAG----ACGCAATGCCGTACCAACTGCACCGCGA
TGGTTGAAACCTCCTGCAGGGGTTACTGCACCAGTGGTGGCGGA---CCTCGATCGAGCTGCAGGAAATACGTCTTCGAG
GATTGCAACGTAAAGGGTACCTGCTGCAGTAGCAACGGCACATGCACTTGTGACTGCAACACTGTGGCTGAAAGGGGTTG
CATGAGCGTCAGCGACGGCACCCTACAATGTGACCCTTGCAAGCGCAGCATATACGACCAGTGCGGTTCCACCTGTAGGA
ATGACTGCAACAACAACTGCAAGAAGAA---AGGGTGCCGCCATGAT----TAGGAATA--ACATGTAGTCGAT----CG
GCTGCCTTGC----ATAAGAAATAACATGGCTCGTTGTAGTCGTGTGTA----GACTTTTGTAACCGCCATGACCTCGTT
CTATGGGATGGCATAGAAGGAATTAATGGGTCGTGGCGCATCACCTCCGGCGTTTTAGCTGTGGATTTGCATTCTGTTT-
ATCTGTA-----------CTGAATAATAGTATGAAAAAAGGAAAGAAATTTCACAAAGTTGACATGGTGTGAAAT--TAT
TGTTCTTCAATGTTC-TTCTTCCATGGAGCTTGTGTATGTGTGTTGATTTGCTTGTATTCATCATCTTGTCTATCCAAGT
ATGCATTTGTGCGCGTTGTAGTATCCAGTAATACTTGGAGGTGATGCGTGCCTTCGCCGTGCCATTTACTTTCTTTCGTT
GTTGAGGAAACTGGCCTTTTTTATGTAAAATAAATCACCTTCCCCTGATGATTAGAATGCTTGCGACCTTGCGTTTATAG
AACCATTTTTTGTACCGAAGTCAAGGCCTGTATGTATTAGACTATGAGTGCTTGTCTGTTTGAAGAGCATGGATAGAATG
GCCAAACTGCGTAGATATATAGGAGTAAAATACGGTGAGAGTTAGTAGAAATCCTATTTGCGTCGAAGGGGAAACGTCCA
CACATAATGAGAAAAATCATCCAAAATCACAAGGGAATAGAGATAGCTAGTATTACTTGGAAAGGGGAGGTCCATACATC
ACCATGGATCAATTGAAAAGCAAAAGAAGCAATAGTAGAAGATGAACTAAACAGAAGACAAACAAGCTTTCCAACACGAC
ACTCGTGGCAAGTGTGCTCATTCAGAGTGCCATCTCATGGTGTTTCCCGACATGGTGGGGCTCCAAACTGCTGCCACGCC
TATATATGAACCGGCAGATGCCATTTGGTTCTTCGGCTTCTATAAGCAAGTGCTTTTTCTAGGCTATACGGCTTACGGTT
TTGTAAGCTGAGTGCTTTAAGTGGGCGACCCGGCTTATATAATATAAGCCGAGTGCATTTTCTATGCGACCAGGCTTATA
TAATATACGCTGAGTGCTTTTACCTTGGCGGCCCGACTTATAGTTGGTAAGCCGAGTGCCAAAGTGTTTTTTTTTTGCTT
TGTTTGCTGTAACAGCCTTGCAATTGGAACAACAATATATCAATCAATATATATAGCTCCACCAAACTCAACATGTATAG
ATATCCAACAATATATGTAGTAGCTCCACAAAGTTCAACATGCATACATATCCAACAAAGTTGCATATATCCAACAAATT
CACGCCAAACACAACCATATTGTTCATAAGTATAAAATCATAACCATGAGCTCCACCACTGAGAACATAGCATGTAAGGC
CACCTTCGGCATCCGCGATGCAAACCTACAAGTTCATTACAGCAAGCATGAGTTTCCGAGTTTAAAAAGCATGTGTCGGC
AATAATCGCAGCCGACCCAGCCCGCAGGCAATTGCGGGCCGCCCCAACCTCGGCCATCCCAAGGTCACTTGCAGTGCAGG
CCGCCGCCCCAGGACATCCGTCATCCTGTCGCCTGTTTGCCCTCCTCCCGGCGCTCGCTCTCGTCTCCATGGCCGTGTGC
CTCCGCAGGTCCGCAGGTCGGACTAGCAAGCATATGTGGCTGAAGTGCATGCATGTATTGATTCGTACGGTTCTATACTC
AGCAGCCCCAAACACACTAATCCATCACATGCACTGCTAACCCAGGCATCCAGCGCCCCGGCGCGCGTACACACATCCAG
GCATCCAGCACTAGTCTAGCCAGACACATTTCATCCATCCAGCACGCACACGAAATCAGAAACACACACAGGCCACAGCA
ACCAGAGGAGAGACTGTGCTTTCTACATGAGGGAGGGTAGTATTACGAGGACGACGTCACCATACGGTGGGTGTCGGCGC
GTTCTTGGCCTTACTGAGTTTTAATGGATTACTATCCAAAATACCCTTAACTTGTGCGTTCTTTTCTACTATTAACTGCA
GGATGCCACACTCATGATGGATGCATGACGCAAGTACCGGACGTCCCTTCATCTCCAAAATATCATGTCACATGATGGAA
CCTATGAATCACAAGGATGCTCAGTCTCGAAAACGAAATGAGCAAGTCACATGATGCACCGAGGGCCGCGTCTTCTTGCC
GCAACTTGCAGCTAACAAGTCAATGTTCGCCCTACTACCAGACTAGTAACATAAATCAGGAATTGAAGATGGGGCAAGAG
AAGACCAAATCAAAGTCAATTCATGCGATCTGGACACTACGAGCAATTAATGCACCACTTAATAAGAGCCAGTTGCAAGT
AAATCTAGGATCAATCCGCCGATCTTGATCTCGTCAAAGTCAATGCTTCGTTAGAACAAGTACTCTACAATAGCAGGCCT
ATAGCCCGTTCACATGACAATTTTGCCTATATGGAGGAGAGAGATATGAAGAAGTGAGGAGAGTGGACTCTCATGAAAGA
GTCTAGCTATATGTGTACTCATAGGCAAATACAATAATAAATATATATGAAGAAAAAGATAGAGAGATGGAAAAAAGCAT
TACTACTTTTGTAGCCAACCATATAACTAACCTTGTTGTATGAGTGACTATAAGTGATGACTATATATGACACGGCAACA
TTATATAGTCAGTTTTTGGCTATACTACAACTTTGTATTGATAAGTAATCTGGAGTATCATAAACAGTGCATTTGGCTCA
ACTGTTATGTTACTCATTCAAGTGGTTGTTCTCTGGAGTAAAGAAAAAGGTATTCGACAGAAGTGCATCCTACCACCTGT
GGTAGTTATCCTCATGTCTCGTATACTAATATGTAGTACTATATATACTATTTTATCATTATAAGTGTGTTCATATGCTA
TATATAAGATACTTTAAAGTGAGTTGCATGAAAAAATTATATGTTGACTCATTATTTTTATTATATTTATGAAATACGTA
CAAATTTGTACGAAAAAGGAGCATACTCAAAGTACGATACATACTACAAAAGTAGTATATATACTACCTAAACATTCTTA
CGTAGTACATACTTTTGGTGATAACTATCACCGGGTGGTAGGAAACATTTGTACTACCCCCTTTGATCGGTGAGCCAAAA
AATGAAATTGTGAAAGTTCATACTGGAGATCTTCAAGACAGAGTGCCGGGAAATTAATGGAGCCCAGTGATCCTCCTCAA
GCCAACTTGTGACATTTTTTAGCCAGACTCTAACATGGTGCAGTTTACTTTAGATAGTCATCCATTCATATACTTTAGTT
TAGATCTACGTTACTACGTATCTTCCACTGCAAGCTAGCTAGCCTATAAATAGTATCAGGAGGCGCACCATATCATATAG
CAACTCACCTTCTCTTGCTCCGCATATTCACCTCTCTAGCTACAAAGCTGGCTCTGCAACAATGGCTGCAGGTGGTGCTT
CTCTTCTTGCTGCTGTCGTTGTTTTCTCCATGCTGATCACGTCTTCCCTGGGGGCCCCGAGGCCTTTATGCAGCGAGTGC
GAGACACAATGCCCTACCAGCTGTCAGGCGGAGGCTGAAACCTTCTGCAGTGGCTACTGCCGCCGCGGCGGAGGCCTTCG
GGAGGGCTGCCGGAGATCCGTCTTTGAGGACTGCACCGTAAAGGGTACCTGCTGCAGTAGCAACGGCACATGCACTTGCG
ACTGCAACACTGTGGCTGAAAGGAGTTGCATCAGCATCAGCGACGGCACCCTACAATGTGAACCTTGCAAGCGCAGCATA
TCCGACCAGTGCGGTTCCACCTGTAGGAATGACTGCAACAACAACTGCAAGAAGAAAGGGTGCCGCCATGCCTAGGAATA
ACATGTAGTCGACCCGCTGCCTTGCATAAGAAATAACATGGCTCACCGTAGTCGTGCGTAGACTTTTGTAGCAGCCATGA
CCTCGTTCTGTGGGATGGCATAGAATGAATTAATGGGTTGTGGCGCATCACATCCAGCGTTTTAGCTGGGGATTTGCATT
CTGTTTATCTATACTGAATGATAATATGAAAAAGGAAAGAAATTTCACAAAGTTGACACGGTGTGAAATTACCGTCCTTC
CATAGAGCTTGCGTACGTGTGTTGATTGGCTTCT------------------ATACATCAGCTTGTCCATCCAAGTATGC
ATTTGTGTGTCG--------TTGTAGTATCCAATAATACTTGAAGGTGATGCATGCCTTCGCCGTGCCATTTACTTTCTT
TCGTTGTGGAGGAAACTGCCTTTTTTTTATGTAAATCACCTTCTACTGATGATTAGAATGCTT-----------------
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>chr3D_922
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-----------------------------------------------------------------------------CTT
ATTCACATATCT--TAGCTTGAGACCTTCTCTTGCTCCACATATTTAC--------CATTAGGAT----CTAGCT--ACA
AAGCTTGCTCGGCAACAATGGCTGCAGGTGGGGCTTCTCTTCTTG---CCTTCT---------CTTTTTTTTCCATGCTG
GTCATGTCTTCCCTGGGGGGTCCTAGGCCTTTATGCAGCGACTGCGAG----ACGCTGTGCCGTACCAACTGCGATGCAG
AGGTTGAAACCCTCTGCGGCAGTACCTGCGACTACAACA---ACAGCGGTCAGGCCGACTGCCGGCGTCAGCTCTTGAAG
AGGTGCACCACAGAAGGTACCTGCTGCAGTAGCAACGGCACATGCACTTGTGATTGCAACACTGTAGCTCAAAACGGTTG
CTTCGGGGTCAGCGACGGGTACACACGCTGCGGTTCATGCAAGCTTGGCAGGTTCAACCAGTGCTATCCCACCTGCAAGA
ACGACTGCAACAACAACTGCAAGAAGAAGAAAGGGTGCCAC---GCA----TAGGAAAACCACATGTAATCGGGG--CCG
GGTGCCCTGC----ATAGGAAATAACATGGCTCCTTGCAGTCGTGCGTA----GATTTCTTTAAACGCAATGTGATGAT-
---------------------------------------------------GTTTTAGCTGAGGATTTGTCTTCTGTAT-
TTCTGTTTATCTTTCTTGCTGAATAATGAATCGCAA-------------------------------TGTGAAAT--TAT
GGTTGTTCAATGTTCCTTCTTCCATAGA----------------------------------------------------
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-------------------------------------------------------------------GCAGGTGGGGCTT
CTCTTCTTGCTGCTGTTGTTGTTTTCTCCATGCTGATCACGTCTTCCCTGGAGGGCCTGGGGCCTTATTGCAGCGAGTGC
GAAACGCAATGCCGTACCAGCTGTGAGGCGGAGGTTGAAACCTTCTGCAGTGGTTACTGCAGACGTGGTGGCGGACCTCG
GGAGAGCTGCTGGAGA--CGTCTTTGAGGAGTGCATCATAAAGGGTACCTGCTGCAGTAACCACTGCA------------
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>chr3A_971
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--------------------------------------------------------CTC-----T----CAAGAT--ACA
AAGCTTGCTTGGCAGCAATGGCCGCAGGTGGTGCTTCTCTTCTTG---CTGCTGCTGTTGTTATTGTTTTCTCCATGCTG
ATCACGTCCTCCCTGGGGGGCCCGAGGCCTTTATGCAGCTACTGCGAG----ACTCAATGCCGTACCAGCTGTGAGGCAG
AGGCTAAAACACGCTGCAGTGGTTACTGCAGCCGTGGTGGCGGA---GCTCGAGGGGGCTGCACGAAATACGTCCTTGAT
GAGTGCAACGTAAAGGGTACCTGCTGCAGTAGCAACGGCACATGCACTTGCGACTGCAACGCTGTGGCTGAAAGGGGTTG
CATGCACTTCAGCGACGGCACCCTACAATGTGGACCTTGCACGCGCAGCATATTCGACCAGGGCTATCCCACCTGCAAAA
AGGACTGCAACAACAACTGCAAGAAGAA---AGGGTGCCGCCATGCCTAGCTAGGAATA--ACATGCATGTAGTCGGTCA
GCTGCCTTGCATATATAGCAAATAACATGGCTCGTTGTAGTCGTGCGTA----GACTTTCATAACCGCCATGACCTCGTT
CTGTGGGATGGCATAGAAGGAATTAATGGGTCGTGGCGCATCACCTCCGGCGTTTTAGCTGTGGATTTGCATTCTGTTT-
ATCTATA-----------CTGAATAATAACATG-AAAAAGGAAAGAAATTTCAGAAAGTTGACATGGTGTGAAAT--TAT
CATTCTTCAATGTTC-TTCTTCCATGGAGCTTGT----------------------------------------------
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>SNPs
--------------------------------S------S-S-SSS---SSS------S------S-------S------
-S------S--S----SS-------------S----S-----------------S-----------S------S--S---
S-SSSS-S-SSS-----------------------------------S------------------S--S-S--SS--S-
------S----S------SS---------S---SSS---------------S---------------S-----------S
------------S-S--S----S--SS------------S---S-------S--S------------------------S
-----S----------------------SSSSS------S----S---SSS-S--------S----S--S-SSSS-SSSS
SSSSSSSSSSSSSSSSSS------S-----------S----------S-------S-----SSS--S----SSSSSSS--
-------------S--S----SSS--------S--------S--------SSSSS------SSS---SS-SS------S-
-S---S-----S-----S-SS----------S------------------SS--S-------------------------
---SS---------------S---------------S-----------S------------------------S---SSS
SSSSSSSSSSSSSSS-------------S--------SSSSSS---------------S--SSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-------S----S---------------------------------------------------------
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--------------------------------S-----------------------------------------------
-------------------------S------------------------------------------------------
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------------------S-----------S---------------------S---------S---S-----------S-
------------------------------------------------------------------------------S-
-------S-----------------------------------------------------S------------------
--------------------------------------------------------S-S---------------------
----------------------------------------------------------------S---------------
----------------------------S----------------------------------S----------------
----S-------------------------------------------------------------------S-------
----------------------------------------S--------------S------------------------
---------S----------------------------------------------------------------------
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--------------------------------------------------------------------------S-----
--S-------------------SS---------S-------S--------------------------------------
-----------S------------------S--------------------------------------------SS---
-------------S--SSSSSS----------------------------------------------------------
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--------------------------------------------------------------S----------S------
-----S---------------------S-S--------S----S---S-------SS--------S-------------S
-SS-------SS-------S--------------S--------------S------------------S-----------
------------------S------------S---S--------------------------------------------
--------------------------------------S-----------S-S------S--S-----------------
----------S-------S------S------SS--S-S-S-SSS-SS-------------SS-----------------
---------S--------------S-----------------------------S------------S------------
---------S-----
>forward_639
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-----------------------------------------------------------AAGGGCACAAGACAGACGAG-
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>reverse_3984
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---------------------------------------------------------------TATGCCGTGACCTGGTT
CTG-----------------------------------------------------------------------------
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