>input_sequence_80983
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---------ATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCATGGCGGAGGCGGAGGAGGCGGC
GGTGTACGAGCGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACG
TCGTCAAGCGCCTCCTGCTTGGCCTGGGGGTCGGCCCCACCGTCTACGAGTTGGACCAGATGGGCGGCGCCGGGCGAGAG
ATCCAGGCGGCGCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCAGTGCCCGTGGTGTT
CGTCGGCGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGG
ACGCCGGCGCGCTCTGGCTCTGA---------------------------------------------------------
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>chr2D_1_TraesCS2D01G252500
CTGTCAATACGGGGA--CTATTACCGTTGCTCTA-CTGCGCGCAACCGACTATGGCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTGGTGTGAGCCGTTGGTGAGGAAGACCCAA--------GAGCGATGGACGGTTATGCATGCCGCGGGGGCCTGGT
-GGGGGAATCGATCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCAGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGATTGTCTTGTC
ACGCCGTGTCCATGCTCCGT------------TCCCTCCCTCCCTCCCTCCGTATAGTCGGCGTTCAAATTCTTGGCCTG
CAGATACATGTAAATTCCTAGTAC------------TTAGAATTCGCCTGTAAATCGAGATGGACAATATTTTCTGAGAG
CGTTAAAGGCCCATTGGTTCATTATA-------------AAGAAAAGGAG------------------------------
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------TAACTGATTTTGCTGATGTGCCACAACATAAGTAGATTAGGCGGCCGTGCATGCATGCATGCTACGGAGTAGGA
TCGGCTC---GCCATGCCATGCATTGCATCCATCTTTCGGCCATCCCTTTGC-TTTTTCCTTCTCCTCGTCTACGCACAA
AAG---CTACCGCATAGCTCTTTAACTTGCTCCTCGCTTTAC------TCTCATCTCTTGTAACCGTAGTGGAATGGGGT
GGAGTAGTGGTGGCTAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACCAGCTCTGCCAAAAGCGATCCATGTCTCTTTG
ACCCCCCACACCCCACCCCCGTATACTCCCTTCCCTTCTCCCATCACACTTCCATTC--GAGACACACT----CACCCTT
CGACCTGTCCGCCTCTCCTATATAAACGCACGTCCACCGCTCCCTGTTCC--TCATCCTCGTTCCCTTGCACTGCGCCAA
CAAACAATTAACTAC------ACTCTCACTAGCTAGCTAGGC-----TAGGCCGGGGAGGGAGAAGGAG-----------
-GCGCCAAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCATGGCGGAGGCGGAGGAGGCGGC
GGTGTACGAGCGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACG
TCGTCAAGCGCCTCCTGCTTGGCCTGGGGGTCGGCCCCACCGTCTACGAGTTGGACCAGATGGGCGGCGCCGGGCGAGAG
ATCCAGGCGGCGCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCAGTGCCCGTGGTGTT
CGTCGGCGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGG
ACGCCGGCGCGCTCTGGCTCTGAGCCGCGAGCTGCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACTGATGGTG---GT
GGTGATCAACGACGGCGTTTACTTTGTGTGTTGGTCG---------------TCTTTTCTTTTCTTGTGCCGTGCCTGTG
GCTGTGGCT----------------------------------GTGCGT---------------------TGCATGGTGT
GTTGAGCTTCACTGGCTAGTGAGATGTAGATATAGTTAACAAGGAAAGCTCAATTAGCCTTGTCAGTTGCGTGTG-----
--TTTGTTTTTGTAGGTGACGCTTATCTAGTTAGA-------------------------GAGTGGAGGGATACTAGCCA
TC------AGATCAGACCAACAATGTAATGCAATGAC-----GCCTAGCAAACTAGCATGCACATTGTGTTATTATTATC
CTGAGATAAATCAAGTATCTGTCCACCGTAAACCATAGACACTATCATCTCTATGCATGTTCGTGTATACTGATGC----
---------------------GTACTCAATTGGACGTCTTGATTGGTATACATGCCTCGCAGTCGCATGCATACTTGTAG
TAGTACTCCTAGTAGAGGAAAAATAATCCTAATAAGAGTATAGTTGTTGAAGCTGTA----GTAGCATTTTGTTGGTGGA
AAATTGAATTTT------------------------------GATTTGATGGAGAGTGGGAAGACGCGTCCACAGAAGGT
GATGCACGCGACTGTCCGTAGTAGAGTAGTACGCTGGTACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCA
GCAGCAGAGCAAAGCCCCATGAAACGTGACTTGCCTTTTTTTTTTGGA--GGCTTGGTTCAAAGGCGTGAGGTAGCTTTA
ACCTCA-------------------------------------CTCACTGTACCGGCTTGTTTTTAGCAGACG----CTT
TTTTGTTGGTCATGGCCGGTAAGAATGCTGAGGTTAGCT-AAGACTAGATGCCGCTGGCAAGCAAGCACT--GTTCGTGT
GACGATCCACAATCAACTCATCTGCACTAGTAGTAATACAAGCGATATTTCAGGCACGGTTATTTGCTACGCGTCATGAT
GCTTTGACACGTAGTAGTACTAGCTAGAATAAGAAGAAAAATCT
>chr2B_1
CTGTCAATACGGGGACTCTATTACCGTTGCTCTA-CTGCCCGCAACCGACTATGGCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTCGTGTTAGGCGTTGGTGACGAAGACCCAA--------GAGCGATGGACGGTTATGCATGCCGCCGGGGCCTGGT
GGGGGGAATCGATCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCTGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGCTTGTCTTGTC
ACGCCGTGTCCATGCTCCGT------------TCCCTCCCTC--------CGTATAGTCGGCGTTCAAATTCTTGTCCTG
CAGATACATGTAAATTCCTACAGTAGTACTACTACTTTAGAATTCGCCTGTAAATCAAGATGGACATTATTTTCTGAGAG
CGTTGAACGCCCATTGGTTCATTATATTATAGGAGTATAAAGAAAAGGGG------------------------------
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------TAATTGATTTTGCTGATGTGCCACGACAGGAGTAGATTAGGCGGCTGTGCATGCATGCATGCTAGGATCGCCTC
GCCATGCCATGCCATGCCATGCATC-CATCCATCTTTCGGCCATCCCTTCGC-TTTTTCCTTCTCCTCGTCTACGCACAA
AAG---CTACCGCATAGCTCTTTAACTTGCTCCTCGCTTTAC------TCTCATCTCTTGTAACCGTAGTGGAATGGGGT
GGAGTACTAGTGGTCAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACCGGCTCTGCCAAAAGCGATCCATGTCTCTTTG
ACTCCCCACACCCCAC-----------CCCTTCCCTTCTCCCATCACACTTCCGTTC--GAGACACACACACACACCCTG
TCCGCTTCT--CCTATCCTATATAAACGCACGTCCACCGCTCCCTGTTTTCTTCATCCTCGTTCCCTTGCACTGCGCCAA
CAAACAATTAACTACACTCTCACTCTCACTAGCTAGCTAGGC-----TAG------------------------------
---GCCAAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCGTGGCGGAGGCGGAGGAGGCGGC
GGTGTACGAGAGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACG
TCGTCAAGCGCCTCCTGCTTGGCCTGGGAGTCGGCCCCACCGTGTACGAGTTGGACCAGATGGGCGGCGCCGGGCGGGAG
ATCCAGGCGGCCCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCGGTGCCCGTGGTGTT
CGTTGGCGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGG
ACGCCGGCGCGCTCTGGCTCTGAGCCGCGAGCTGCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACCGA---TG---GT
GGTGATCAACGGCGGCGTTTACTTTGTGTGTTGGTCGT-----CTTTTCTTTTCTTTTCTTTTCTTGTGCCGTGCCTGTG
CTGTGGCTGTGCGTGGGCGATGGATGGACGCGTGCGTGCGTGCGTGCGT---------------------TGCATGGTGT
GTTGAGCTTCGCTGGCTAGTGAGATGTAGATATAATTAACAAGGAAAGCTCAATTAGCCTTGTCAGTTGCGTGTG-----
--TTTGTTTTTGTAGGTGATGCTTATCTAGTTAGA-------------------------GAGTGGAGGGATACTAGCCA
TC------AGATCAGACCAACAATGTAATGCAATGAC-----GCCTAGCAAGCTAGCCTGCACATCGTGTTATTATTATC
CTGAGATAAATCAAGTATCTGTCCACCGTAAACCATACATACTATCATCTCTATGCATGTTCGTGTATACTGCTAC----
---------------------CTACTCAATTGGACGTTTTGATGGGTATACATGCCTCGCACTCGCATGCATACTTGTAC
TA---CTCCTAGTAGAGGAAAAATAATCCTAATAAGAATATAGTTGTTGGAGGTGTA----GTAGCATTTTGTTGGTGGA
AAATTGAATTTTTTTTCGAGGGTACAAGGAAAATTGATTTTTGAATTGATGGAGAGTGGGAAGATGCGTCCACAGAAGGT
GATG--------------------------------GTACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCA
GCAGCAGAGCAAAGCACCATGAAACGTGACTTGCCT---TTTTTTTTA--GGCTTGGTTCAAAGGCGTGAGGTAGCAGAG
CATAGCATGCATGCATGAAGCGGTTGCCGTGAGATGCTTTAACCTCACTCTACCGGCTAGTTTTTAGCAGACG----CTT
TTTTGTTGGTCATGGCCGGTAAGAATGCTGAGGTTAGCTAAAGACTAGATGTCGCTGGCAAGCAAGCATACGGTTCGTGT
GACGATCCACAATGAACTCATCTGCACTAGTAGTAATACAAGCGATATTTTAGGCACGGTTATTTGCTACGCGTCATGAT
GCTTTGACACGTAGTAGTACTAGCTAGAAGAAGGAGAAAAATCT
>chr2A_1
CTGCCAATACGGGGACTCTATTACCGTTGCTCTAACTGCGCGCAACCGACTATGCCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTGGTGTGAGGCGTTGGTGACGAAGACCCAAGAGGCCAAGAGCAATGGACGGTTATGCATGCGGCCGGGGTCTGGT
-GGGGGAATCGCTCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCAGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGCTTGTCTTGTC
ACGTCGTGTCCATGCTTCGTTCCCTTCCTCCCTCCCTCCCTC--------CGTATAGTCGGCGTTCAAATTCTTGGCCTG
CAGATACATGTAAATTCCTAAGT---------------------------------------------------------
--TTGAAGGCACATTGGTTCATTATA-------------AAGAAAATAGTTTTGCTGACCGAGACTTCGTTATATCTCAG
TTGATGTTATTTTTCTTTAATTTTGCATGAAGATTCGTACAAAAAATATATTTTCAGTTTTTTTTCTCTTTTTCTTCTTA
CATACTACTGTATATCATTTGAGTGAGACTTGGTTAAGTCTCAGTCGACTGAGACCTAACCACACCCTAAAAGAAAAGAG
TACTATTAATTGATTTTGCTGATGTGCCACAACATGAGTAGATTAGGCGGCCGTGCATGCATGC-----------TAGGA
TCGGCTC---GCCATGCCATGCATC-CATCCATCTTTCGGCCATCCCTTTGCTTTTTTCCTTCTCCTCGTCTACGGACAA
AAGCTACTACCGCATAGCTCTTTAGCTTGCTCCTCGCTTTACTCTCTATCTCATCTCTTGTAACCGTAGTGGAATGGGGT
GGAGTAGTGGTGGTCAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACAGGCTCTGCCAAAAGCGATCCATGTCTCTTTG
ACTCCCCACACCCCACCCCCGTATACTCCCTTCCCTTCTCCCATCACACTTCCATTCGAGAGACACACACACACACCCTT
CGACCTGTCCGCCTCTCCTATATAAACGCACGTCCACCGCTCCCTGTTTTCTTCATCCTCGTTCCCTTGCACTGCGCCAA
CAAACAATTAACTAC------ACTCTCACTAGCTAGCTAGGCGAGGCTAGGCCGGCGAGGGAGAAGGAGAAGGAGAAGTA
GGCGCCAAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCGTGGCCGAGGCGGAGGAGGCGGC
GGTGTACGAGCGGGTGGCTCGCATGGCCAGCGGCAACGCCGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACG
TCGTCAAGCGCCTCCTGCTTGGCCTGGGAGTCGGCCCCACCGTCTACGAGTTGGACCAGATGGGCGGCGCCGGGCGGGAG
ATCCAGGCGGCCCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCGGTGCCCGTGGTGTT
CGTCGGCGGGAGGCTCCTGGGAGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGG
ACGCCGGCGCGCTCTGGCTCTGAGCC-------GCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACTGA---TGATGGT
GGTGATCAACGACGGCGTTTACTTTGTGTGTTGGTCGTCTTTTCTTTTCTTTTCTTTTCTTTTCATGTGCCGTGCCTGTG
CCTGTGGCT----------------------------------GTGCGATGGATGGACGCGTGCGTGCAATGCATGGTGT
GTTGAGCTTCACTGGCTAGTGAGATGTAGATATAATTAACAAGGAAAGCTTAATTAGCCTTGTCAGTTGCGTGTGTTTGT
GTTTTGTTTTTTTAGGTGATGGTTATCTAGCACGTACTAGTTCGTTACAGAGTCAGAGTGGAGTGGAAGGATACTTAGCC
ATCAGATGAGATCAGACCAACAATGTAATGCAATGCAATGAAGCCTAGCAAGCTAGCATGCACATGGCGTTATTATTATC
CTGAGATAAATCAAGTATCTGTCCACCGTAAACCATACATACTATCATCTCTATCCATGTTCGTGTATATACTTTTCGAA
AAATGTTCGTGTATACTGCTACTACTCAATTGGACGTTTTGATGGGTA--CATGCATCGCATTCGCATGCATACTTGTAC
TA---CTCCTAGTAGAGGAAAAATAATCCTAATAAGAGTATAATAGTTGAAGGTGTAGTACGTAGCATTTTGTTGGTGGA
AAATTGAATTTT------------------------------GAATTGATGGAAAGTGGGAAGATGCGTCCACAGAAGGT
GATGCACGCGACTGTCCGTAGTAGAGG-----------ACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCA
GCAGCAGATCAGAGCCGCATGAAACGTGACTTGCCT---TTTTTTTGGAGGGCTTGGTTCAAAGGCGTGATGT-----AG
CATAGCATGCATGCATGAAGCGGTTGCCGTGAGATGCTTTAACCTCACTGTACCGGCTAGTTTTTAGCACATTTTTACTT
TTTTGTTGCTCATGGCCGGTAAGAAT-CTGAGGTTAGCT-AAGACTAGATGCCGCTGGCAAGCAAGCA--CGGTTCGTGT
GACGATCCACAATGAACTCATCTGCACTAGTCGTAATACAAGCGATATTTTAGGCACGGTTATTTGCTACGCGTCATGAT
GCTTTCACACGTAG------------------------------
>SNPs
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--------------S---------S--------------------------------------------S----------
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---------------------------------------------------------------------S----------
------------------------------------------SSSSSSSS------------------------------
--------------------SSSS--------------------------------S---------S-------------
----S-------------------------------------------S-------------------------------
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---------S-------------------------S----------------------------------S-SSS-----
------------------------SS------------------------------------------------------
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-------------SS----------------------------------S------------------------------
--S-----------------------------------------------------------------S-----------
------------------------------------------------SS------------------------------
-------------------------------------------------------S------------------------
---------------------------------------------------------S----------------------
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----------------------------S-----------------------------------------------S---
-----------S-----------------------------------------------------S--------------
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----------------------------------------------------------------------SSS-------
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S-------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------------------S-------------S--------------
-------------------------------------S-S--------------------------------S-S-----
---------------------S---------------S-----S-----------------S-----------------S
--SSS-----------------------------------------------S---------------------------
--------------------------------------------S-------------------S---------------
--------------------------SSSSSSSSSS--------------------------------------------
------------------------------------SSS------S------------------------------SSSS
SSSSSS----------------------------------------------------S---------------------
--------------------------------------------------------------------SS----------
-------------S------------------------------------S-----------------------------
-----------------------------S---S----------
>forward_95
---------------------------------------------------------------------------GTTGG
TTGTGTGGTGTGAGC-----------------------------------------------------------------
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>reverse_2510
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-----------------------------TACGCTGGTACCGGTACGTA-------------------------------
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