>input_sequence_80978
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---ATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCGTGGCGGAGGCGGAGGAGGCGGCGGTGTA
CGAGAGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACGTCGTCA
AGCGCCTCCTGCTTGGCCTGGGAGTCGGCCCCACCGTGTACGAGTTGGACCAGATGGGCGGCGCCGGGCGGGAGATCCAG
GCGGCCCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCGGTGCCCGTGGTGTTCGTTGG
CGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGGACGCCG
GCGCGCTCTGGCTCTGA---------------------------------------------------------------
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>chr2B_1_TraesCS2B01G271600
CTGTCAATACGGGGACTCTATTACCGTTGCTCTA-CTGCCCGCAACCGACTATGGCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTCGTGTTAGGCGTTGGTGACGAAGACCCAA--------GAGCGATGGACGGTTATGCATGCCGCCGGGGCCTGGT
GGGGGGAATCGATCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCTGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGCTTGTCTTGTC
ACGCCGTGTCCATGCTCCGTTC----CCTCCCTC--------CGTATAGTCGGCGTTCAAATTCTTGTCCTGCAGATACA
TGTAAATTCCTACAGTAGTACTACTACTTTAGAATTCGCCTGTAAATCAAGATGGACATTATTTTCTGAGAGCGTTGAAC
GCCCATTGGTTCATTATATTATAGGAGTATAAAGAAAAGGGG--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
ATTGATTTTGCTGATGTGCCACGACAGGAGTAGATTAGGCGGCTGTGCATGCATGCATGCTAGGATCGCCTCGCCATGCC
ATGCCATGCCATGCATC-CATCCATCTTTCGGCCATCCCTTCGCTTTTT-CCTTCTCCTCGTCTACGCACAAAAG---CT
ACCGCATAGCTCTTTAACTTGCTCCTCGCTTTACTCTC------ATCTCTTGTAACCGTAGTGGAATGGGGTGGAGTACT
AGTGGTCAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACCGGCTCTGCCAAAAGCGATCCATGTCTCTTTGACTCCCCA
CACCCCAC-----------CCCTTCCCTTCTCCCATCACACTTCCGTTCGAGA------CACACACACACACCCTGTCCG
CTTCTCCTATCCTATATAAACGCACGTCCACCGCTCCCTGTTTTCTTCATCCTCGTTCCCTTGCACTGCGCCAACAAACA
ATTAACTACACTCTCACTCTCACTAGCTAGCTAGGC-----TAG---------------------------------GCC
AAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCGTGGCGGAGGCGGAGGAGGCGGCGGTGTA
CGAGAGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACGTCGTCA
AGCGCCTCCTGCTTGGCCTGGGAGTCGGCCCCACCGTGTACGAGTTGGACCAGATGGGCGGCGCCGGGCGGGAGATCCAG
GCGGCCCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCGGTGCCCGTGGTGTTCGTTGG
CGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGGACGCCG
GCGCGCTCTGGCTCTGAGCCGCGAGCTGCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACCGA---TGGTGGTGATCAA
CGGCGGCGTTTACTTTGTGTGTTGGTCGT-----CTTTTCTTTTCTTTTCTTTTCTTGTGCCGTGCCTGTGCTGTGGCTG
TGCGTGGGCGATGGATGGACGCGTGCGTGCGTGCGTGCGT---------------------TGCATGGTGTGTTGAGCTT
CGCTGGCTAGTGAGATGTAGATATAATTAACAAGGAAAGCTCAATTAGCCTTGTCAGTTGCGTGTG-------TTTGTTT
TTGTAGGTGATGCTTATCTAGTTAGA-------------------------GAGTGGAGGGATACTAGCCATC------A
GATCAGACCAACAATGTAATGCAATGAC-----GCCTAGCAAGCTAGCCTGCACATCGTGTTATTATTATCCTGAGATAA
ATCAAGTATCTGTCCACCGTAAACCATACATACTATCATCTCTATGCATGTTCGTGTATACTGCTAC-------------
------------CTACTCAATTGGACGTTTTGATGGGTATACATGCCTCGCACTCGCATGCATACTTGTACTA---CTCC
TAGTAGAGGAAAAATAATCCTAATAAGAATATAGTTGTTGGAGGTGTA----GTAGCATTTTGTTGGTGGAAAATTGAAT
TTTTTTTCGAGGGTACAAGGAAAATTGATTTTTGAATTGATGGAGAGTGGGAAGATGCGTCCACAGAAGGTGATG-----
---------------------------GTACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCAGCAGCAGAG
CAAAGCACCATGAAACGTGACTTGCCT---TTTTTTTTAGGCTTGGTTCAAAGGCGTGAGGTAGCAGAGCATAGCATGCA
TGCATGAAGCGGTTGCCGTGAGATGCTTTAACCTCACTCTACCGGCTAGTTTTTAGCAGACG----CTTTTTTGTTGGTC
ATGGCCGGTAAGAATGCTGAGGTTAGCTAAAGACTAGATGTCGCTGGCAAGCAAGCATACGGTTCGTGTGACGATCCACA
ATGAACTCATCTGCACTAGTAGTAATACAAGCGATATTTT
>chr2D_1
CTGTCAATACGGGGA--CTATTACCGTTGCTCTA-CTGCGCGCAACCGACTATGGCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTGGTGTGAGCCGTTGGTGAGGAAGACCCAA--------GAGCGATGGACGGTTATGCATGCCGCGGGGGCCTGGT
-GGGGGAATCGATCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCAGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGATTGTCTTGTC
ACGCCGTGTCCATGCTCCGTTC----CCTCCCTCCCTCCCTCCGTATAGTCGGCGTTCAAATTCTTGGCCTGCAGATACA
TGTAAATTCCTAGTAC------------TTAGAATTCGCCTGTAAATCGAGATGGACAATATTTTCTGAGAGCGTTAAAG
GCCCATTGGTTCATTATA-------------AAGAAAAGGAG--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
ACTGATTTTGCTGATGTGCCACAACATAAGTAGATTAGGCGGCCGTGCATGCATGCATGCTACGGAGTAGGATCGGCTC-
--GCCATGCCATGCATTGCATCCATCTTTCGGCCATCCCTTTGCTTTTT-CCTTCTCCTCGTCTACGCACAAAAG---CT
ACCGCATAGCTCTTTAACTTGCTCCTCGCTTTACTCTC------ATCTCTTGTAACCGTAGTGGAATGGGGTGGAGTAGT
GGTGGCTAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACCAGCTCTGCCAAAAGCGATCCATGTCTCTTTGACCCCCCA
CACCCCACCCCCGTATACTCCCTTCCCTTCTCCCATCACACTTCCATTCGAGA------CACACTCACCCTTCGACCTGT
CCG--CCTCTCCTATATAAACGCACGTCCACCGCTCCCTGTTCC--TCATCCTCGTTCCCTTGCACTGCGCCAACAAACA
ATTAACTAC------ACTCTCACTAGCTAGCTAGGC-----TAGGCCGGGGAGGGAGAAGGAG------------GCGCC
AAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCATGGCGGAGGCGGAGGAGGCGGCGGTGTA
CGAGCGGGTGGCTCGCATGGCCAGCGGCAACGCGGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACGTCGTCA
AGCGCCTCCTGCTTGGCCTGGGGGTCGGCCCCACCGTCTACGAGTTGGACCAGATGGGCGGCGCCGGGCGAGAGATCCAG
GCGGCGCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCAGTGCCCGTGGTGTTCGTCGG
CGGGAGGCTCCTGGGCGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGGACGCCG
GCGCGCTCTGGCTCTGAGCCGCGAGCTGCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACTGATGGTGGTGGTGATCAA
CGACGGCGTTTACTTTGTGTGTTGGTCG---------------TCTTTTCTTTTCTTGTGCCGTGCCTGTGGCTGTGGCT
----------------------------------GTGCGT---------------------TGCATGGTGTGTTGAGCTT
CACTGGCTAGTGAGATGTAGATATAGTTAACAAGGAAAGCTCAATTAGCCTTGTCAGTTGCGTGTG-------TTTGTTT
TTGTAGGTGACGCTTATCTAGTTAGA-------------------------GAGTGGAGGGATACTAGCCATC------A
GATCAGACCAACAATGTAATGCAATGAC-----GCCTAGCAAACTAGCATGCACATTGTGTTATTATTATCCTGAGATAA
ATCAAGTATCTGTCCACCGTAAACCATAGACACTATCATCTCTATGCATGTTCGTGTATACTGATGC-------------
------------GTACTCAATTGGACGTCTTGATTGGTATACATGCCTCGCAGTCGCATGCATACTTGTAGTAGTACTCC
TAGTAGAGGAAAAATAATCCTAATAAGAGTATAGTTGTTGAAGCTGTA----GTAGCATTTTGTTGGTGGAAAATTGAAT
TTT------------------------------GATTTGATGGAGAGTGGGAAGACGCGTCCACAGAAGGTGATGCACGC
GACTGTCCGTAGTAGAGTAGTACGCTGGTACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCAGCAGCAGAG
CAAAGCCCCATGAAACGTGACTTGCCTTTTTTTTTTGGAGGCTTGGTTCAAAGGCGTGAGGTAGCTTTAACCTCA-----
--------------------------------CTCACTGTACCGGCTTGTTTTTAGCAGACG----CTTTTTTGTTGGTC
ATGGCCGGTAAGAATGCTGAGGTTAGCT-AAGACTAGATGCCGCTGGCAAGCAAGCACT--GTTCGTGTGACGATCCACA
ATCAACTCATCTGCACTAGTAGTAATACAAGCGATATTT-
>chr2A_1
CTGCCAATACGGGGACTCTATTACCGTTGCTCTAACTGCGCGCAACCGACTATGCCCCGTTGTGCTGATCTATTGGTTGG
TTGTGTGGTGTGAGGCGTTGGTGACGAAGACCCAAGAGGCCAAGAGCAATGGACGGTTATGCATGCGGCCGGGGTCTGGT
-GGGGGAATCGCTCACGTGAAGGCAATGTGGGACGTGAAGGAGGTGACGATGGGCGTGACGGCGTTTGGTGGCAGTGGGG
CCGAGGAGTCAAACGGCGGCTGAGGGGGACGTCGTGCTGTCGGCTTGTCGGCTGCCGTGACGATCGACGCTTGTCTTGTC
ACGTCGTGTCCATGCTTCGTTCCCTTCCTCCCTCCCTCCCTCCGTATAGTCGGCGTTCAAATTCTTGGCCTGCAGATACA
TGTAAATTCCTAAGT-----------------------------------------------------------TTGAAG
GCACATTGGTTCATTATA-------------AAGAAAATAGTTTTGCTGACCGAGACTTCGTTATATCTCAGTTGATGTT
ATTTTTCTTTAATTTTGCATGAAGATTCGTACAAAAAATATATTTTCAGTTTTTTTTCTCTTTTTCTTCTTACATACTAC
TGTATATCATTTGAGTGAGACTTGGTTAAGTCTCAGTCGACTGAGACCTAACCACACCCTAAAAGAAAAGAGTACTATTA
ATTGATTTTGCTGATGTGCCACAACATGAGTAGATTAGGCGGCCGTGCATGCATGC-----------TAGGATCGGCTC-
--GCCATGCCATGCATC-CATCCATCTTTCGGCCATCCCTTTGCTTTTTTCCTTCTCCTCGTCTACGGACAAAAGCTACT
ACCGCATAGCTCTTTAGCTTGCTCCTCGCTTTACTCTCTATCTCATCTCTTGTAACCGTAGTGGAATGGGGTGGAGTAGT
GGTGGTCAGAGTGTGCCGGGTTCGTTGCGGAGCTCGCGACAGGCTCTGCCAAAAGCGATCCATGTCTCTTTGACTCCCCA
CACCCCACCCCCGTATACTCCCTTCCCTTCTCCCATCACACTTCCATTCGAGAGACACACACACACACCCTTCGACCTGT
CCG--CCTCTCCTATATAAACGCACGTCCACCGCTCCCTGTTTTCTTCATCCTCGTTCCCTTGCACTGCGCCAACAAACA
ATTAACTAC------ACTCTCACTAGCTAGCTAGGCGAGGCTAGGCCGGCGAGGGAGAAGGAGAAGGAGAAGTAGGCGCC
AAGATGTTGAGGATGCAGCAGCAGGTGGAGGGCGTGGTGGGCGGCGGCATCGTGGCCGAGGCGGAGGAGGCGGCGGTGTA
CGAGCGGGTGGCTCGCATGGCCAGCGGCAACGCCGTGGTCGTCTTCAGCGCCAGCGGCTGCTGCATGTGCCACGTCGTCA
AGCGCCTCCTGCTTGGCCTGGGAGTCGGCCCCACCGTCTACGAGTTGGACCAGATGGGCGGCGCCGGGCGGGAGATCCAG
GCGGCCCTGGCGCAGCTGCTGCCCCCCGGACCCGGCGCCGGCCACCACCAGCAGCCGCCGGTGCCCGTGGTGTTCGTCGG
CGGGAGGCTCCTGGGAGGCGTGGAGAAGGTGATGGCGTGCCACATCAACGGCACGCTCGTCCCGCTCCTCAAGGACGCCG
GCGCGCTCTGGCTCTGAGCC-------GCATTGCTTTGCTGTCTCGCCGGCCGGCCGGAACTGATGATGGTGGTGATCAA
CGACGGCGTTTACTTTGTGTGTTGGTCGTCTTTTCTTTTCTTTTCTTTTCTTTTCATGTGCCGTGCCTGTGCCTGTGGCT
----------------------------------GTGCGATGGATGGACGCGTGCGTGCAATGCATGGTGTGTTGAGCTT
CACTGGCTAGTGAGATGTAGATATAATTAACAAGGAAAGCTTAATTAGCCTTGTCAGTTGCGTGTGTTTGTGTTTTGTTT
TTTTAGGTGATGGTTATCTAGCACGTACTAGTTCGTTACAGAGTCAGAGTGGAGTGGAAGGATACTTAGCCATCAGATGA
GATCAGACCAACAATGTAATGCAATGCAATGAAGCCTAGCAAGCTAGCATGCACATGGCGTTATTATTATCCTGAGATAA
ATCAAGTATCTGTCCACCGTAAACCATACATACTATCATCTCTATCCATGTTCGTGTATATACTTTTCGAAAAATGTTCG
TGTATACTGCTACTACTCAATTGGACGTTTTGATGGG--TACATGCATCGCATTCGCATGCATACTTGTAC---TACTCC
TAGTAGAGGAAAAATAATCCTAATAAGAGTATAATAGTTGAAGGTGTAGTACGTAGCATTTTGTTGGTGGAAAATTGAAT
TTT------------------------------GAATTGATGGAAAGTGGGAAGATGCGTCCACAGAAGGTGATGCACGC
GACTGTCCGTAGTAGAGG-----------ACCGGTACGTACGCACGCAGTCGCAGATGCCAGACGCATGCAGCAGCAGAT
CAGAGCCGCATGAAACGTGACTTGCCTTT-TTTTTGGAGGGCTTGGTTCAAAGGCGTGATGT-----AGCATAGCATGCA
TGCATGAAGCGGTTGCCGTGAGATGCTTTAACCTCACTGTACCGGCTAGTTTTTAGCACATTTTTACTTTTTTGTTGCTC
ATGGCCGGTAAGAAT-CTGAGGTTAGCT-AAGACTAGATGCCGCTGGCAAGCAAGCA--CGGTTCGTGTGACGATCCACA
ATGAACTCATCTGCACTAGTCGTAATACAAGCGATATTTT
>SNPs
---------------------------------------S----------------------------------------
------S----S--------------------------------------------------------------------
S------------------------------------------------------------------------S------
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-------------------------------------------------------------------S------------
------------SSSSSSSSSSSSSSSS--------------------S---------S--------------------S
------------------SSSSSSSSSSSSS-------------------------------------------------
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----------------------S---S----------------S------------------S-SSSSSSSSS-SSSS-S
SS---------------------------------------S--------------------------------------
------------------------------------------------------------------------------S-
S-------------------------------------------------------------------------------
---------------------------------------------S----------------------S-SS-SSSSSSS
-SSSS---S-----------------------------------------------------------------------
---------SSSSSS-----------------------------------------------------------------
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----S---------------------------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------------------------------S--
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-------------------------------------------------------------S------------------
--S---------------------------------------------------------------------SSSS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------S-----------------------
---------------------------------------------------------------S-S--------------
----------------------------------------------------S---------------------------
----------------------------S-----------S---------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
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------S-----------------------------SS---------------------------SS-------------
--------------------------------------S-----------------------------------------
----------------------------S-----------S----------------SS---------------------
----------------------------------------
>forward_792
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----------------------------------------------------ATGCATGCTAGGATCGCCTC--------
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>reverse_1763
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--GCGGCGTTTACTTTGTGTGT----------------------------------------------------------
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