>input_sequence_80971
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--------------------------------------------------------ATGATCTGGGGGGTCGCAGCCGCC
GTCGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCGTGCGACTGCGCCCCGACGGCGCCGACCGC
CGC------CGCCGCCGTCGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCTGGGCCTCCGCGGG
TCGCTGTCTCGTTTCCTCCCCTGCCTTCTCCCCCAATCTTCCCCTCCCAACGAACCTCCTCCTTCCTT-GATAGCAACCC
CCGGTTTC-------GATTCGGGATCACGACGGCGTCTTGAGCTGTTTTGTGCTTG---CTGCAGCTTTCGCAGGAATCC
TCGTCGTCGAGCGGCCGGGACGACAGGTTCGCGCCGAGGTTCGACGGGCTGCGGTTCATCCAGACGCTCGTCACGGCGCA
CCGCTGA-------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G277700
ACTATAGATATAAATAATTTAAATATTTATTTCACCATCAATTTGTTTGCATGTAATTACTATAAATGTACACGGTAGAT
CATCAATTTTCAAATTAATTTAAGTCATTTTAGCCATAATCATATGCATAGAAAGAAGGAAAGTTAGGGTATCGTAGCTT
CTCTAACATTCCTTCTCAATGTTAGAGGATCCGGTTCCGGTCTAGCCCACGTTGAGGCTTGGTGCAATCTTCTTCTGAGC
CACACAATTAGCAGCAATTGCCCTGATGCTCATCGCCTATTTTACAACAACTGCAAGTTGTGCAATTTTCAACGCGACTC
ATTTAGTTACTGTGTGTAGAGGGAAAGATGACAAAAGGCAGGACAATGAAGTACTACC----------------------
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------------------------------TCTGTCTGGGTTTATTGGCCCCCATTGTATTTTGTGCCCAACTTTGACCA
CATATTTGACTAAAAAATTATAAGTTGTATGC----CACAAAACTTATATTGTTGGATTCATATTTGAAAGAGCTTTCTA
ATAATATTAATTTTAGGGTATACAACTTATTTTT-AATAGTTAAATCAGTGGTTAAAGTTTGACCCAAACTACAA---GG
ACTAATGAATCAGGATTCAGGACGGAGGTAGTAACAAGGAATTAGATGATTTGCCTCATTTTAG-AGGGGATGCATGATT
TTCCCAAGGTTATTTTAATGACTAGTGGCCTCGGCCACATCCGTCAATGGT--GGTAAATTATCAAATAGAGAAGT----
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--------------------------------------------------------------AAAGTGCGGCTTATGATC
TA------ATTTCACGGAGTAACAGCGAGCAAATAAAAAGTCCTCGTTACTTTTT---TTTAAGTAAAAAGTCCTCTTTA
CATGAGCC--------------------------CAGAAGCAAAGACGAATCTGCCCGCAACCATCTCACGGCCATATAC
AAACGCGGCTTGCCGTCAGCACGGTTCCAGCCCACCAGAGAGATTCCAGCGTGCCGCCAGCGTTCGTTCACACCCCTCTC
CCCTG---------CAGCCAGCCGCCAGAGGAGCAG---GGGAAAGTGGATCGACGATGATCTGGGGGGTCGCAGCCGCC
GTCGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCGTGCGACTGCGCCCCGACGGCGCCGACCGC
CGC------CGCCGCCGTCGTCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCTGGGCCTCCGCGGG
TCGCTGTCTCGTTTCCTCCCCTGCCTTCTCCCCCAATCTTCCCCTCCCAACGAACCTCCTCCTTCCTT-GATAGCAACCC
CCGGTTTC-------GATTCGGGATCACGACGGCGTCTTGAGCTGTTTTGTGCTTG---CTGCAGCTTTCGCAGGAATCC
TCGTCGTCGAGCGGCCGGGACGACAGGTTCGCGCCGAGGTTCGACGGGCTGCGGTTCATCCAGACGCTCGTCACGGCGCA
CCGCTGAAGTCGCCGGAAGCTCGACCCATCGGCCGGGCGGCTCCCAGCCGACCCTGTTCCTCAGGGGATTCTTTCCTGCC
GCACTCTTCATGCGATTCGCGAGAAGAGGCTATCTGCTAGACGGTTAATTCGGCGATTGGCGGCGACTATGCTG-CAAAA
TTTTGCTAGGATAAA--TTGAGATTTTTTGTTTCTTTCTTC---TTTTCCTGGTGATGATGATCGTCCTATTGTTGACTG
ATGCCGTTGAATTGAAACCTTCAAGTGACATGTGATGAGTGTATGTGCCTGTGCTAGCATTGGTTCTTTACCTGATTTGT
TGTGCAAGC----------ATGATTTCACCTCCAAACTTGCCACTCTATGTGTTGCCTTGTTGTCTTCTGTGTGTGGTCG
GTCTTGTTCTGGAGCTGTTTCTTCCTCTCCCTTGGCTGCTCATATCACATGGCTCAGTGTTTGGACTTTGGAGTGCATCC
TGTCCATGTATGTTGGGGTGGTAAAACTAACATTATTCCCTGGACTGGATGTATGGTAATGATCACTGGCTGAATGCTGA
AATGGACTTCGATCGTTGAGACATGATCTTTCAGTCCTGACAGGGCCTATAGATCAAGCTTAACCACTCCAAGAACTCGA
AGTCAAGCATCTTCGGGAATATCCAAATTAGTCTTCAACTAGAGAAAGGATAAGAATCTCCTTTGCTGAGTTTTCTTCTG
CAGCGGATGTAGCGGCGAAAGATTCTATTCTTTCCGCGGTCTAGTTACGTCTTTCCTCTCCCTATCTATAAGAGTTCTAT
TAACATAGACCCTTTCCTGACTCTCTATCATTTTAACAAAGCAGCAAATCTTTCTCTCTATTCTACTAGCCGATCTTGTC
TGTTGAAAATCGATCTGAAATATGGTCATATCTTCTTTCCAACACAAATAATTGTGGAGTTGAAGAATGAGCTTGCTGTA
ACTGTCGACACATCAGACACAACATCATCAGACCAGAGCAGTCAAAATTTCTGCAAGCTAGGC
>chr1B_199
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--------------------------------------GGTCTAGCCCACTTTGAGGCTTGGTGCAATCTTCTTCTAAGC
CACACAATTAGCAGCAATTGCCCTGATGCTCATCGCCTATTTTACAACAAGTGCAACTTGTGCAATTTTCAACGCGCCTC
ATTTAGTTACTGTGTGCAGAGAGAAAGATGACAAAAGGCAGGACAATGAAGTACCCCC----------------------
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------------------------------TCCGTCTGGGTTTATTGTCCTCCTTCATATTTTGTGCCCAACTTTGACCA
CAAATTTGACTAACAAATTATAAGCTGTATGC----CACAAAATTTATATTATTGAATTCATATTTGAAAGAGGTTTCTA
ATAATATTAACTTTTGGATATATAACTTATTTTTCAATAGTTAAATCAGTGGTCAAAGTTTGACCCAAACTACAA---GG
ACTAATGAATCAGCACGA-------AGGTAGTAACAAGGGATTAGATGATTTGCCTAATTTTACAAGGGGTTGGATGATT
TGTCCAAGATTGTTTTAATGACTAGTGGCCTCGGCCTCATCCGTCAATTAG-GGGCAAATTATCGAATACTCCCTTCGTT
CAAAAAAACTTGTCCCAAATTTATCTTTTTAATGGATGTATTTAACACTAACTTGATGCTAGATACATTTATTTGTCTAA
AATCTAAAAAGTGCATACGCACTAATTAGAGAAAACGAGCGGCCAGTCTTACACACGCATGCATGTAGTTGTGTGATCTA
AATTTTATCTTTATTCGAGACGTGGCATGTATTACTTGGATGGTCACATGGACAAGACGCCGCATTATTCCATGGATGCA
CATGTTCATTTATTCGGGTTTTCAAATTTTTAAAAAGTCATATCTTTTTAACCGTGCTTCGGAATTTAGATCCATTTTCA
CTATTCGAATCATCGCGACGAGATCTTTGAAACTAGATCCCGCATGAGTATGTTTTGACGAATTTTTTGATGCCAACTTT
GATGCTATATTGTGCAACTCTATTACTGTATTGTGCAATTTTAGTACTACATCGTGCAACTTTTTCTCAAAACTAATGTT
TTCAGCTGCACCTTCGTATGAGGTTGCAACCTAACAACCACGTCAACTTTGATGTGCAACTAGTCTATTGCCTCGATGAA
AGTCGATGTGCAACCTCCTCTGGTAATGTAGTCTAGTTGCACACACTTTGATGTTTAGTTGACTTGTAATGTAGTCTAGT
TACACACGCATTGATGTTTAGTTGGTAAAAAGACTAGTTGCACACACATATGCTCAGTTGACTTGTAATTTAGTCTAGTT
GCACACACATTAATATTTAGTTGGCAGAACACTAGTTGCACACACATATGCTCAGTTGACGCGGCAATTTAGTCTAGTTA
CACACACATTGATGTTTAGTTGGCAGGACTTTTTGGCACATGCGCATATGCTCAGTTGGCGCGACAATCTAGTCTAGTTG
CACACACTTTGATGTTTAGTTGGCACGATTTTTTGGCACACACATATGCTCAGTTGGCGTGGTAATCTAGTCTAGTTGCA
CACAAATTGATGTTAGTTGGTAGGAAGACTAGTTCGTCAACATATCCGCATGCGGGATCTAGTTTCGAAGAGCACGTCAC
GAGGATTCCAGCGGTGAAAACGGATAATTCCGACACATGGATTGAAAATAATGCTTTTTTTAATTTTTGAAACCATGAAT
TAAATACACCAAAAAAATAAAACACATGCATCAAAAGGATGGCTAAGCAGACATTTAAGAACCAGGTGAAAAGTTTTTCT
AATTAAGATGGTTAATTAGGAAGGGGGATAAAAAATTCTTAAAATAGCCGGCCGCTCGCGAGCGGCAACGAGCGCCCAGC
AGCCAGCTAGACCGGTTCATTTATTCGAGGACGAGCTTTTTCGGACGGAGGGAGTAGGGAGGAAAGTGCGGCTTATGATC
TACTAGTAATTTCATGGAGTAACCGCGAGCAAGTAAAAAGTCCTCGTTACTTTTTGTTTTTTAGTAAAAAGTCCTCGTTA
CATGATCCCTGTGCAGTCCGGAACTACAAAAGCCCAGAAGGAAAGACGAAACTTCCCGCAACCATCTCACGGCCTATACA
ATACGCGGCTTACCGTCGGCACGGTT-CAGCCCGCCAAAGAGATTCCAGCGTGCCGCCAGCGTTC----ACG-------C
CTCTCCCCCCTTTCCAGCCAGCCACCAGAGCAGAAG---GGGAAAGTGGATCGACGATGATGTGGGGAATAGCAACCGCG
GTGGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCCGAGCTCCTCGCGTGCGACTGCGCCCCGACGGCGCCGACCGC
CGC------CG---------TCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCTGCGCCTGCGCGGA
TCGCTGTTTCGTTTCCTCCCCCGCCTTCTCCCCCAATCTTCCCCTCCCAAAGAGTCTCCTCCTTCCTTGGATAGCAATCC
CCGGTTTTGATTTGGGATTCTGGATCACGACGGCGTCTTGAACTGCTTTGTACCTCG---TGCTGCTTTCGCAGGAATCC
TCGTCTTCTAGCGGCCGGGGCGAGAGGTTCGCGCCGAGGTTCGACGGGCTGCGGTTCATCGAGACGCTCGTCACGGCGCA
CCGCTGAAGACTCCGGAAGCTCGTCCCGTCGTCCGGGCGGCTCCCAGCCGACCCTGTTCATCAGGGGATTCTTTCCTACC
GCCCTCTTCATGCGATTCGCGAGAAGAGGCTAGCTGCTAGACGGTTAATTCGGCGATTGGTGGCCAATATGTTGCCAAAT
TTTTGCTAGGACAAA--TTGAGAGTTTTGGTTTCTTTCTTCTTCTTTTCCTGGTGATGATGATCGTCCTATTGTTGAGTG
ATGCGGTTGAATTGGAACCTTCAAGTGGCATGTGATGATTGTATGTGCCTGTGCTAGCATTGGTTCTTTACCTGATTTGT
TGTGCAAGCATGATGTGATATGATTTCACCTCCAAACTTGCCATTCTATGTGTTGTCTTGTTGTCTTCTGTGTGTGGTCG
GTCTTGTTCTGGAGCTGTTTCTTCCTCTCCCTTGGCTGCTCATATCACATGGCTCAGTGTA-------TGGAGTGCACCC
TGTCCATGTCTGCTGGGGTGGTAAAACTAACATTATTCCCTGGACTG----TATGGTAATGATCACTGGCTGAATGCTGA
AATGGACTTTGATCGTTGAGACATGATCTTTCAGTCCCGACAGGGCCTGTAGATCAAGCTTAACCACTCTAAGAACTCGA
AGTCAAGCATCTTCGGGAATATCCAAATTAGTCTTCAAGTAGAGAAAGGATAGGAATATCCTTTGCTGAGTTTTCTTGTG
CAGCGGATGTAGCGGTAAAAGATTTTATTCTCTCCGCGATCTAGTTACGTCTTTCCTCTCCCTATCTATAAGAGTTCTAT
TAACATAGACCCTTTCTTGACTCTCTATCATTTTAACAAAGCAGCAAATCTTTCTCTCTACTCTACTAGCCGATCTTTTC
TGTTGAAAATCGATCTGAAATATGGTCATATCTTCTTTCCAACACAAATAATTGTGGAATTGAAGAATGAGGTTGTTGTA
ACTGTCGACACATCAGACACAACACCATCAGACCAGAGCAGTCAAAATTTCTGGAAGCTAGGC
>chr1A_301
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------------------------------------------------------------TGCAATTTTCAACGTGGCTC
ATTTAGTTACTGGGTGCATAGGGAAAGATGACAAAAGGCAGGACAATGGAGTACTACCATGGAATTGTCATGGCAGATGT
CCTAGTGAAAGGACTTAATCGTGGAGCCATCGCAACTAGGAAGCTTAAAGGGGTTAAACGGACAAAGGACACGAGAGGTT
TATACTGGTTCGGCCCCTTGCGATGAAGGTCAAGACCTAATCCAGTTGAGGTGATATTGCTAGCTTTCGATGACCAAGGA
GCGAATATGCTTAACCTGGCTCTCGATCTGTTGTTTTTCTTGCCCTAAGCCGCCGCCGGGTCGTCCCCTTATATACACAG
GTTGACGCCCCGCGACCTACAGAGTCCCGGCCGGCTCATACAACGTGTCCGGCTTGGTGACGTATCTTACATGCCTTACA
TTACAAGTCTATTCATCTATAGCGGTTTATACTTACAGGCCTTAAGTTGCCTCTGGGTCTGGGCCTATCATAAGCCTAAC
TGTGAACCGCCACCTTATATACTCTTGGGCTTCACTCAGGTGAACCGTCATTGTGGTTGACCCGACCCCTTCTGGGCGGC
TCATATATGATAGTCATATCCCCAACAACCTCCGTCTGGGTTTATTGGTCCCCTTCGTATTTAGTTCCGAACTTTGACCA
CAAATTTGACTAACAAATTATAAGTTGTACGTATATCACAAAACTTATATTGTTGGATTCATATTTGAAAGAGGTTTCTA
ATAATATTAATTTTAGGGTATATAACTTATTTTT-AATAGTTAAATCAATCGTCAAAGTTTGACCCAAATTACAAAGAGG
ACTAATAAATCAAGACA-------GAGGTAGTAACAAGGGATTAGATGATTTGCCTCATTTTACAA-GGGATGAATGATT
TGCCCAAGGTTG-TTTAATGATTAGTGGCCTCGGCCTCATGCGTCAATTAGAGGGCAAATTATCAAATGGAGAAGT----
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--------------------------------------------------------------AAAGTGCGGCTTATGATC
TA------ATTTCACGGAGTAACAGGGAGCAA------------------------------------------------
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>chr1A_885
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--------CTTGCCGTCGGCACGGTTCCAGCCCGCCAAAGAGATTCCAGCGTGCCGCCAGCGTTC----ACGCCTCTCTC
CCCTCCCCGCCAGCCAGCCAGCCGCCAGAGGAGGAGGAGGGGAAAGTGGATCGACGATGATGTGGGGAATAGCAGCCGCC
GTGGCGTCCGCGGCCGCCGTCGCCGTGGCCTCCGGCGCGGAGCTCCTCGCGTGCGACCGCGCCCCGACGCCGCCGACCGC
CGCCGCGGTCG---------TCGTCGGCAGATGCGACGGGTTCCTCTTCCGACAGCGGGTACGTGCTGCGTCCGCGCGGG
TCGCTGTTCCGTTTCCTCCCCTGCCTTCTCCCCCAGTCTTCCCCTCCCAAAGAATCTCCTCCTTCCTTGGATAGCAATCC
CCGGTTTC-------GATTCGGGATCACGACGGCGTCTTGAACTGTTTTGTACTACTTCCTGCTGCTTTCGCAGGAATCC
TCGTCGTCGAGCGGCCGGGACGACAGGTTCGCGCCGAGGTTCGACGGGCTGCGGTTCGTCGAGACGCTCGTCACGGCGCA
CCGCTGAAATCGCCGGAAGATCGACCCGTCGGCCGGGCGGCTCCCAGCCGGCACTGTTCATCAGGGGATTCTTTCCTACC
GCCCTCTTCATGCGATTCGCGACAAGAGGCTAGCTGCTACACGGTTAATTCGGCGATTGGTGGCCAATATGTTGCCAAAT
TTTTGCTAGGACAAAATTTGAGATTTTTCGTTTCTTTCTTCTTCTTTTCCTAGTGATGATGGTCGTCCTGTTGTTGAGTG
ATGCGGTTGAATTGGAACCTTCAAGTGGCATGTGATGATTGTATGTGCTTGTGCTAGCATTGGTTCTTTCCCTGATTTGT
TGTGCAAGCACGATGTGCTATGATTTCACCTCCAAACTTGCCATTCTCGTG-------TGTTGTCTTTTGTGTGTGGTCG
GTCTTGTTCTGGAGC-----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-------------------------S---
--------------------------------------------------S-----S-------------------S---
----------------S---------------------------------------------------------------
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--------------------------------S--------------------S-S------------------------
--S----------S-----------------------------------------------------------S------
----------------------S------------------------------S--------------------------
---------------SSSSSSSSS---------------S-----------------------S---------S------
-S---------S------------------------S-----------SSS----S------------------------
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--------------------------------S----------------------------S--------------S---
-----S----------------------------------S---------S--S--------------------SSSSSS
-S---------------S---------------S---S---------------------------SSSS--S--S-----
----S----------------------------S---------------------------S-----SS-S---------
--S-----------------------------------------------------------------------------
-----------SSSSSSSSS------------------------------------------------S----S------
-------S------------------------------------------S---S----------------------S--
-----------------------------------------S---------S---S-------S----------------
------------------------------------------------------------S-------------------
---------------------------S-------------------------------S-----------------S--
--S-----------------------------S---------------------------S---S-S----S-------S
-----------S----------------S------------------------------------------------S--
----S---------S------------S----------S-----------------------------------------
-------------------------------------------S-----------S------------------------
------------------------------------------------------------SSSSSSSS---------S--
---------S--S----------------------------------SSSS-----------------------------
---------S---------------------------S----------S--------------------S----------
--------------------------------------S-------------S----S-------------------S--
---------------SS-------S------S------S-----------------------------------------
----------------S-------------------------------------------S----------------S--
----------------------------------------------------------S------------S---S----
------------------------S----------------------------S---------
>forward_2673
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-------------ACGGAGTAACAGCGAGCAAA-----------------------------------------------
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>reverse_4112
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-------------------------------TTCCGCGGTCTAGTTACGTC-----------------------------
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