>input_sequence_80959
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----------------------------------------------------------------ATGTCGAGCAGAAGGT
CGTCGCGCGGCTCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCTTACCACCCAAACACGGATGCAC----ACGCACATTACTCCACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACGGGGGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTCCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGA------------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G334600
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGCTGCATGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAATGACGGAAGGGTGG-------AGAGAAGAGGCCATCGATCCATGTCCCTGTTTAGCTTTACACATACA
CAAGGTGCGTGTTCTTTCTCCGAAAAGCTTATTACTCCATGATCAAGACTCTCAATTTGCACTACTCGACTAATTAGGCA
ATGCCGATGATTGACAGTGGTATG------------ATCAGTTCGTGGTACATACACGTAGTACGTCTTAACAAGGCTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTGGAATAACATCAAATCACAACCTCAAACGAAACAAGTGATTTTGTCT
ATTTCCTGGACGTTGCTGGATCGGTCAGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACCG
AACAGTCCTGCAAGGCAGCATGGGGCACGTGGCTAGTGGTGGGTGGTCATTTAAGTAGGGCCCAACGAGCTGCCTCTCCA
CCTGTGGGCCCCACAAGCCGATGACCGTGGGGCCGGGTAGGCCCGGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCT-ACCCCGTTAGAGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGAGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCCCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCAGCTCGACGTCAGCGAGGGCCGCCCTTCGCTCA
CCGGCCAACCGCCCGGCACCTTTTGAGCGTACACACTGCGAGGCTTTGTT----AGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTAGCTCATCCCGGCCGGCCAGCGACGTAGCAGCGGCTAGGAAGAAGATGTCGAGCAGAAGGT
CGTCGCGCGGCTCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCTTACCACCCAAACACGGATGCAC----ACGCACATTACTCCACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACGGGGGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTCCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGATCGTACTACGGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCGGCTGCGCTAT
GGGTCTCT---CCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTA---TCTCTTTCCTGCTCCCTTTCTGCCTAGATCTGATCGTGTAGATCAAAAAATGTACTACGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTCTCGATCGTCTCCTCCGTG--------------------------------------------
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----TGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATCG
ACAACCGACCGACCACTACTACGGTACTACTACTACCTA---GAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACG---TACTACGAGATCAAATTAATACTAGACTGG-------------------------
---------TGTATGGTATTAAGATAATATGCAAATGATGCCGGGCTTTCATGGTTGCTTCCTCTA-TGCCCTCTCGCCC
TCGATCGGCCCTAT----CCGTACGTACGCACGTGACGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTACG
CTATACTATTTAT--GCTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCACTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGATGCTACGACCAGTGACTCTCCTTGTGCTACGGAAACGGCACGGCGTTATGTGAAAAGAGTGCAAA
CCCGGTCTCTCTATGTGTGTCTCCACACCAGTGCATGTGTCTCCACTTGGGTTTGTCCTTTCTTTAATCAGCACTTACTG
AAAGAAAATAGACGAGGGGATCAGGAAAGGCTTCGCGTCAACTGCCTTATTTTGCCGGCTGTTAATGCT
>chr6D_1
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGTTGCACGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAATGACGGAAGGGTGG-------AGAGAAGAGGTCATCGATCCATGTCCCTGTTTAGCTTT--------A
CAAGGTGCGTGTTCTTTCTCCGAAAAGCTTGTTACTCCATGATCAAAACTCTCAATTTGCACTACTCGGCTAATTAGGCA
ATGCCGACGATTGGCAGGGGTTTGATTCGTCCACACATCAGTTCGTGGTACATACACGTACG----CTTAACAAGGCTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTCGGATAACATCAAATCACAACCTCAAACGCAACGAATGATCTTGTCG
ATTTCCTGGACGTTGCTGGATCGGTCAGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACTG
AACAGTCCTGCAAGGCAGCATGGGGCACATGGCCAGTGGTGGGTGGTCATTTAAGTAGGGCCCAACGAGCTGCCTCTCCA
CCTGTGGGGCCCACGCGCCGATGACAGTGGGGCCCGGGAGGCCTGGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCT-ACCCCGTTAGCGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGGGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCTCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCAGCTCGACGTCAGCGAGGGCCTCCCTTCGCTCA
CCGGCCAACCGCCCGGCACCTTTTGAGCGTACACACTCCGTAGCTTTGTT----AGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTTGCTCATCCCGGCCGGCCAGCGACGTAGCAGCGGCTAGGAAGAAGATGTCGAGCAGAAGGT
CGTCGCGCGGCGCCATCTCCGACGAGGAGGTCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCTCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTA-----AGCT------CACAACAGCGATGCAC----ACGCACATTACTCTACCA
CTCGCCAGCTAGCTAGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCACGAAATAACG-GGGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCATCCTCC
GCTCGTGATCGTACCACAGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCAGCGGCGCCAT
GGGTCTCTCCGCCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTAATGTCTCTTTTCTGCTCCCTTTCTGCCTAGATCTGATCGTGTAGATCAAAAAATGTACTGCGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTTTCGATCGTCTCCTCCGTGTGCTTCCCTCGCTAGCTCGGAGCTGGATAGATAGCTCCCCCCGT
CCTCCTGTCTGCCTCTTCCCC-----------------------------------------------------------
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-------------------------------------------------------------------------------T
CTTTTGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATAG
ACAACCGACCGACCACTACTACGGTACTACTACTACCTA---GAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACG---TACTACGAGATCAAATTAATACTAGACTGGAGTGTACTGTACTGTACCGTACTGT
TCTTTTTTATGTATGGTATTAAGAT---ATGCAAATGATGCCGGGCTTTCATGCTTGCTTCCTCTAATGCCCTCTCGCCC
TCGATCGGCCCTAT----CCGTACGTACGCACGTGAAGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTAGG
CTATGCTATTTAT--ACTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCGCTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGATGCTACGACCAGTGACTCTGCTTGTGCTACGGAAACGGCACGGCGTTGTGTGAAAAGAGTGCAAA
CCCGGTCTCTCTCTGTGTGTCTCCGCACCAGTGCATGTGTCTCCACTTGGGTTTGTCCTTTCTTTAATCAGTACTTACTG
AAAGAAAATAGACGAGGGGATCAGGAAAGGCTTCGCGTCAACTGCCTTGTTTTGCCCGCTGTTAATGCT
>chr6A_1
AAAAGACTTGCCGCTGATTAGAGAGTTGCTGTGCTGCACGTATGTGTGCAAGTGCAATACAATAGTTGCGTCCGTGTCCG
TTCTCACGACAAGGACAGATGGGTGAAGGCTGAAGAGAAGAGGTCATGGATCCATGTCCCTGTTTAATTAGCTTTACA--
-AAGGTGCGTGTTCTTTCTCCGAACAGCTTATTACTCCATGACCAAAACTCTCAATTTGCACTAGCCGACTAATTAGGCA
ATGCCGATGATTGACAGGGGTTCGATTCGTCCACACATCAGTTCGTGGTACATACACGTACG----CTTAACGAGACTCG
GAGCCAGGAGACCGAGCCGAGGGACTTTCGCTTCGGATAACATCAAATCACAACCTCAAACGCAACAAATGATCTTGTCG
ATTTCCTGGACGTTGCTGCATCGGTCGGCATGGCGAGGAGGCGAACACGTCTAGCCAGGGGTTCTTTCCCGGTAAAACTG
AACAGTCCTGCAAGGC-GCATGGGGCACGTGGCCAGTGGTGGGTGGTCATTCAAGTGGGGCCCAACGAGCTGCCTCTCCG
CCTGTGGGCTCCACGCGCCGATGACAGTGGGCTC----------GGCTCATCAGTGATTAGACGGAGAGAGACACGCGGG
CCCGGCTCACCCCGTTAGCGTTCCTACTTTTGCTCTCCGCCAGTAGCTAGTGCTATAATTACTTGCCGGGGTCGAATTAT
CTCCGCGCATCTACATCGTTCCCCAATCCGTTCTCCGCCCTATAAAGACACCCTCTCCCTTTCTGTCTCCCTCACACACT
CCTCCAGCGATTGCACAACTAGAAGTTATCCAGCGAGTATCCTGAGCGGCTCGACGTCAGCGAGGGCCTCCCCGCGCTCA
CCGGCCAACTGCCCGGCACCTTTTGAGCGTACACACTGTGTGGCTTTGTTAGCTAGCCGGCGGGAGTCTGCAGTCTGCTT
GCTCCGGCACTAGCTAGCTAGCTCATCCCGGCCGGCCAGCGACGCAGCAGCGGCTAGGAAGACGATGTCGAGCAGAAGGT
CGTCGCGCGGCGCCATCTCCGAGGAGGAGATCAACGAGCTCATGTCCAAGCTCCAGTCTCTGCTCCCCAACTCCCGCCGC
CGCGGCTCCAGCCAGGTAACTTGCTTAGCTTAAGCTTACCACCACAACAGCGATACACACGTACGCACATTACTCCACCG
CTTGCCAGCTAGCTGGGTGGTTGCATTGTCCGTGCGAGTTTGACTTGCACGAAGCCAGCAGGAAATAACGGGCGAGTGAA
ATGAAAATGCAGGCGTCGACGACGAAGCTGCTGAAGGAGACGTGCAGCTACATCAAGAGCCTCCACCGGGAGGTGGACGA
CCTCAGCGACCGGCTGTCGGACCTCATGTCGACCATGGACCACAATAGCGCCGAAGCGGAGATCATCCGCGGCCTCCTCC
GCTCGTGATCGTACTACAGCGCCGGCCGGTCGATCGGCGAGAGCTCAACCGCCAGGACAATTAAGCGGCGGCGGCGACAT
GGGTCTCT---CCGGCCAGCCGGACACGTACGAGAGCTTTGCTTAGCTAGGGTATATATATCGTCCTCCACATATTTAAA
TATGTACCGTCTCTTTTCTGCTCCCTTTCTGCCTAGATC-----GTGTAGATCGAAAAATGTACTACGTGTCTCTAAGCT
TCACTCCGTCTGTACTACGTAGGGCATTAGCTTAGCTAGCGTTCCTACCTTGGGCCAAAGCTTATCCTCGCGCGCTGGCT
GCTGCTTGAGCTAATCTCTCGATCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CTTCTGTTGTCCCTTTCTTGATCTACTACTCGATCTGTAAATTTAGTTGGTGGCATTGGATCGAGTTGTGTCCTCTATAG
ACAACCGACCGACCACTACTACGGTACTACTACTACTACCTGGAGCAAATTAATATCATCGTCATGTTGTACCACCCCAG
CTTTAACTTTTGTTGGAATACGTACTACTACGAGATCAAATTAATACTAGACTGGAGTGTACTGT---------------
TCATTTTTATGTACGGTATTAAGGA---ATGCAAATGATGCCGGGCTCTCATGGTTGCTTCCTCT-ATGCCCTCTCGCCC
TCGATCGGCCCTATATATCCGTACGCACGCACGTGAAGCAACGCGTTTACTTTCATCAGGTTAAAAACACGATGATTACG
CTATGCTATTTATATACTTGCATATAGATCCAGTGGTACCACTTGACATGTATGGAATGGCCCACTTGTGGTTGCGGTGG
CTCCGGCTGTTTTGACGCTACGACCAGTGACTCTCCTTGTGCTACGGAAATGGCACGGCGTTGTGTGAAAAGAGTGCAAA
CCCGGTCTCTCTCTGTGTGTCTCCGCACCAGTGCATGTGTCTCCACTTGGGTTTGTCCTTTCTTTAATCAGC----ACTG
AAAGAAAATAGACGAGGGGATCAGGAAAGGCTTCGCGTCAACCGCCTTGTTTTGCCGGCT---------
>SNPs
--------------------------------------S-----------------------------------------
-------------------------------------------S---------------------------SSSS-S-S-
----------------------------------------------S---------------------------------
-----------------S---S--------------------------------------SSSSSS--------------
---------------------------------S-S--------------------------S-----S----S-----S
------------------------------------------------------------------------------S-
---------------------------------S----------------------------------------------
--------------SS---------S--------S--S-----S------------------------------------
------------------S-------------------------------------------------S-----------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------------S---------------------------------------
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-----------S--------------------------------------------------------------------
-------------------------------------------SS----SS-----------------------------
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-----------------------------S--------------------------------------------------
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-----------------S------------------------------------------------------S----S--
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----------------S---------------------------------------------------------------
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------------------------------------------------------------------------------S-
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-------------------------SSS----------------------------------------------------
------------------------------------S-------------------------------------------
----S----------S----------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------S-----------S-------------------------------------------------------
------------------------------------------------S--------------------
>forward_39
-------------------AGAGAGTTGCTGTGCTGCAT-----------------------------------------
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>reverse_1617
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----------------CCTGCTCCCTTTCTGCCTAG--------------------------------------------
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