>input_sequence_80945
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----------------------------------------------ATGGCAAAACACTTTGGTTTGCTCTTGGTTCTTG
CCTTTGTTCTTGTTGTGACGGCTGAAGATTGTACCGTCGACCTAAAAGGGCTTATTCGGGAGTGCAAACAATATGTGATG
TTTCCCGCGAGCCCAAAGATAACTCCTTCGAGTGCATGTTGTAGTGTGGTTCAGAAGGTCAATTCACCGTGCCTGTGCTC
CAAGGTCACCAAGGAGATCGAGAAGGTGGTATGCATGGATAAGGTTGTGTATGTCGCTGATTACTACAAGAATCCACTCA
AACCTGGCTCCGACTGTGGCAGTAAGTGTTATATTTTGAGCCACGTATTATGTACCACTAATACTTGTCATGAACTATGC
ATGACATGCTTTTGTTTTCTAATATTTTCGCAGGTTACCATGTCCCATCTCAAAGACGATAG------------------
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>chr3B_1_TraesCS3B01G360000
CGCCCTTGAATCCTTGAATAGACCTGAAGAACCTGGCACCAAATATTGCCATTGCGTACACACGACGAGAAATGCTAATC
TCACTGCCCAGATGAGTCAGAAATACAAATATGTACTCCACTGTAGAAGTAAATATTGGACTCCGGTAAGTACCACACGT
AAGATACGAGCACATGCCAACTTCGAACCTTTTTTATGGTAAGTTTAGCTACGTGAGGATGGCGATTT-AGTTGGCAAGC
ATGGCAACTTTGTGCTTCAGTTTATTTTTCGACCGAAACTTGTCGTGTGTTACTGAAATTTGTCATCTTTGCATGACTGG
AATTGCTATCGAATAATGTCAGT-GCCGGAGTGCCACACACCTGACGTGTGTCACTTATCATTTAGGTCAATATTTGTTG
AAATGGATTAATGCTTCAATACACATCATAATAAATGGTCTCATAATTATCTCACAAATATATACTAAACATATAATCAG
TGAAATATATGCTGCAAATGCCTCGATCTGTATTCATAGTTTGCATTAATATGATACATCATACATGTATCCAACCTGGC
TGTGCATGGATGTATTCATTAAATAGCTGCATTTGTTGAGATGAGTCAGTACAACAAACATAAGTGCTCGCAGTTGACTA
TAAGACAAACAGAATGGACGGTTGAAATTTCGTAGAAAACATTATATTTTGGAATATATATGCAACGGAACAAAGCAACA
GAAGTGTAGACACGTGTCTACATAGGAACCAGGTGTTGACACTTGTCAGTGCAACAAACGCATGTGTGTACATCTGTCTA
CACGAGAAACAGAAGTCGTGACACTTGTCAAT---CACCACCCACACCTTGATTGAAGTAATTATTTTCCCTCGGGTGAA
TTCATTCCCATCCATGCGCCTATATAAACCCAAGCATCCAACAGAGGACAACCACACCAAAG-AACACAACTCTAGACTT
AACATCTAAGAGAGAGGTAGCCAACCGATTACTAGTAGTAGTAGTTATGGCAAAACACTTTGGTTTGCTCTTGGTTCTTG
CCTTTGTTCTTGTTGTGACGGCTGAAGATTGTACCGTCGACCTAAAAGGGCTTATTCGGGAGTGCAAACAATATGTGATG
TTTCCCGCGAGCCCAAAGATAACTCCTTCGAGTGCATGTTGTAGTGTGGTTCAGAAGGTCAATTCACCGTGCCTGTGCTC
CAAGGTCACCAAGGAGATCGAGAAGGTGGTATGCATGGATAAGGTTGTGTATGTCGCTGATTACTACAAGAATCCACTCA
AACCTGGCTCCGACTGTGGCAGTAAGTGTTATATTTTGAGCCACGTATTATGTACCACTAATACTTGTCATGAACTATGC
ATGACATGCTTTTGTTTTCTAATATTTTCGCAGGTTACCATGTCCCATCTCAAAGACGATAGATGGATGTTTCGTATCTG
GTAATCAAAGGAGAAATGTTGATTTAGTTCCTAGGCCTCTATGTTGACTGG-TTCCGCTTTTATGATATGTGATAGGTTA
AGTTTATGTTGAGTAATTCCTAGGGAATGTGGCCGGTTGTGCGGTGGAAGATCCATCAATGTATGAGTATTAATAAATAT
TTCTCCTCAAATTACATGCTTCCTCTATTTTGTTTTTGTTTGGTCCTTTTCTGGTTTTTGATTCCTTTGAATGTGAATGG
GGATTGAAAACAAGAAAAGGAAATCTTTGTCAGAAGCTTTTTTTTGTCTCACTATTCGATGATAAGTCCTTTGTGAAAGT
GTACGGTAAGTATATGCTTGCAAATGTTAAAATTCAGAGGTGGAACTTGGACATGTGAAAAATAAACATAGAAGTAAATA
TTGGCTAAACTGGATTGGTGCTTCGGTACACATCAT----AATGGACTAATATACACTCTAAATATCTCAGAAGTATATA
CTAAACATATAATTAATGAGATATATGCTACAAATGCCTCGATCTTTATTAATAGTGTGAATTAATATGTTACATGTATC
CAGCCTGGATGTGTCTGGATGAATAAATGTATTCAATAAATAACTACATTCATTGAGATCTTTCAATACAACAAAAGTA-
-AGTGCTCATAGTTGACTACAAGACAAACCCAATGGACCATTAGTATGGTTGTGAATTGGTGTTGGCGCCACGTGGTGCA
ACCATTGGTACGAGCGCTCCATTGCTAGTGTTGATGAAGTGGTGTTGGCACCACGTGGTATGACCATAGGTATGACCGGG
AGCACTCGGACCATGCATCATAA-ACGCTTTGGTTGCTCTGTTGAATTTTCGCCCAAAATGGAAGTAGCTCCAAATGACT
TCATTTGATAAGATGTTGATTGGTTTTCTTCCATATGTTCATTCCTGCACATCAATAGTACCAACAAGCTTTCTTCTTTC
TCGAAGGATTAGTGTTAGAAAGACGCGAGA
>chr3D_1
CGCCCTTCAATCCTTGAATAGACCTGAAGAACCTGACACCAAATATTGCCATTGCGTACACACGACGAGAAACACTAATC
TCACTGCCCCGAGGAGTCAGAAATACAAATATGTACTCCACTGTAGAAGTAAATATTGGACTCTGGCAAGTGCCACACGT
AAGATACGAGCACATGCCAACTTCGCA-CTTTTTTATGGTAAGTTTAGTTACGCGAGGATGGCAATTTTTGTTGGCAAGC
ATGGCAACTTTGTGCTTCAGTTTATTTTTTGATGAAAACTTATCGTGTGTCACTGAAATTTGTTATCTTTGCATGACTGG
AATTGCCATCGAATAATGTCAGT-GCCGGAGTGCCACGCACCTGACGTGTGTCACTTATCATTTAGGTAAATATTTGTTG
AAATGGATTGATGCTTCAATACACATCATAATAAATTGTCTCATAATTATCTCACAAATATATACTAAACATATAATCAG
TGAAATATATGCTGCAAATGCCTCAGTCTGTATTCATAGTTTGCATTAATATGATACATCATACATGTATCCAACCTGGC
TGTGCATGGATGTATTCATTAAATAGCTGCATTTGTTGAGAAGGGCCAGTACAACAAACATAAGTGCTCACAGTTGACTA
TAAGACAAACAGAATGGACGGTTGAAATTTCTTAGAAAACATTATATTTTGGAACATATATGCAACGCAACAAAGAAACA
GAAGTGAAGAAACGTGTCTACATAGGAACCAAGTGTTGACACTTGTCAGTGCAACAAACGCATGTGTGTACATCTGTCTA
CATGAGAAACAGAAGTCGTGACACTTGTCAATGAGCACCACCTACGCCTTGATTGAAGTAATTATTTTCCCTCGGGTGAA
TTCATTCCCATCCATGCGCCTATATAAACCCAAGCATCCAACAGAGGACAACCACACCAAAACAACACAACTCTAGATTT
AACATCTAGGAGAGAGGTAACCAACCGATTACTAGTAGTAGTAGTTATGGCAAAACACTTTAGTTTGCTCTTGGTTCTTG
CCTTTGTTCTTGTTGTGACGGCTGAAGATTGTACCGTCGACCTTAAAGGGCTAATCCGAGAGTGCAAACCATATGTGATG
TTTCCCGCGAGCCCAAAGATAACTCCGTCGAGTGCATGTTGTAGTGTGGTTCAGAAGGTCAATGCACCGTGCATGTGCTC
CAAGGTCACCAAGGAGATTGAGAAGGTGGTATGCATGGATAAGGTTGTGTATGTCGCTGATTACTGCAAGAATCCACTCA
AACCTGGCTCCGACTGTGGCAGTAAGTGTTATATTTTGAGCCATGTATTATGTACCCCTAATACTTGTCGTGAATTATGC
ATGACATGCTTTTGTTTTGTAATATTTTCGCAGGTTACCATGTCCCATCTCAAGGCCGATAGATGGATGTTTCGTATCTG
GTAATCAAAGGAGAAATGTTGATTTAGTTCCTAGGCCTCTATGTTGACTGGATTATGCTTTTATGATATGTGATAGGTTA
AGTTTATGCTGAGTAATTCCTAGGGAATGTGGCCGGTTGTGGGGTGGAAGATCCATCAATGTATGAGTATTAATAAATAT
TTCTCCTCAAATTACATGCTTCCTCTATTTTGTTTTTGTTTGGTCCTTTTCTGGTT-TTGATTCCTTTGAATGTGAATGG
GGATTGAAAACAAGAAAAAGAAATCTTTGACAAAAGCTTTTTTTTGTCTCACTATACGATGATAAGTCCTTTGTGATATT
GTACGGTGAGTATATGCTTGCAAATGTTAAAATTCAGAGGTGGAACTTGGACATGTGAAAAATAAACATAGAAGTAAATA
TTGGCTAAATTGGGTTGGTGCTTCGATACACATCATAACAAATGGACTAATATACACTCTAAATATCTCACAAATATATA
CTAAATGTATAATTAATGAGATATATGTTACAAATGCCTCGATCTTTATTAATAGTGTGCATTAATATGATACATGTATC
CAGCCTGGATGTGTCTGGATGAGTAAATGTGTTCAATAAATAGCTACATTTGTTGAGATCGGTCAGTACAAAAA----A-
-AGTGTTCATAGGTTACTACAAGACAAACCCAATGGACCATTGGTATGGTTGTGAATTGGTGTTGGCGCTACATGGTGCA
ACCATTGGTACGAGCGCTCCATTGCTAGTGTTGATGAAGTGGTGCTGGCACCCCGTGGTATGACCATAGGTATGAGCGGG
AGCACTTGGACCATGCGTCATATTACGCTTTGGTTGCTCTGTTGAATTTTCGCCCAAAAAGGAAGTAGCTCCAAATGACT
TCATTTGATAGGATGTTGATTGGTTTTCTTCCATATGTTCATTCCTGCACATCAATAGTAACAACAAGTTTTCTTCTTTC
TCGAAGGATTAGTGTTAGAAAGACGCGAGA
>chr3D_1
CGCCCTTGAATCCTTGAATAGACCTGAAGAACCTGACACCAAATATTGCCATTGCGTACACGCTACGAGAAACGCTAATC
TCACTGCCCCGAGGATTCAGAAATACAAGTATGTACTACACTGTAGAAGTAAATATTGGACTCTAGCAAGTGCCACACGT
AAGATACAAGCACATGCCAACTTCGAACATTTTTTATGGTAAATTTAGTTACGCGAGGATGGCAATTTTAGTTGGCAAGC
ATGGCAACATTGTGCTTCAGTTTATTTTTTGACGGAAACTTATCGTGTGTCACTGAAATTTGTCATCTTTGCGTGACTGG
AATTGCCATCGAATAATGTCAGT-GCCTGAGTGCCACGCACCTGACGTGTGCCACTTATCATTTAGGTAAATATTTGTTG
AAATGGATTGATACTTCAATACACATCATAATAAATTGTCTCATAATTATCTCAGAAATATATACTAGACATATAATCAG
TGAAATATATGCTGCAAATGCCTTGGTTTATATTCATAGTTTGCATTAATATGATACATCATACATGTATCCGACCTGGC
TGTGCATGGATGTATTCATTAAATAGCTGCATTTGTTGAGATGGGTCAGTACAACAAACATAAGTGCTCACAGTTGACTA
TAAGACAAACAGAATGGACGGTTGAAATTTCTTAGAAAACATTATATTTTGGAACATATATGCAACGCAACAAATAAACA
TAAGTGTAGACACGTGTCTACATAGGAACGAAGTGTTGACACTTGTTAGTGCAACAAACGCATGTGTGTACATCTGTCTA
CATGAGAAACATACATCGTGACACTTTTCAATGAGCACCACCTACGACTTGATTGAAGTAATTATTTTCCCTCGGGTGAA
TTCATTCCCATCCATGCGCCTATATAAGCCCAAGCATCCAACAGAGGACAACCACACCAAAACAACACAACCCTAGATTT
AACATCTAAGAGAGAGGTAGACAACCGATTACTAGTAGTAGTAGTTATGGCAAACCACTTTAGTTTGCTCTTGGTTCTTG
CCTTTGTTCTTGTTGTGACGGCTGAAGATTGTGTCGTCGACCTAAAAGGGATAATCCGAGAGTGCAAACCATATGTGATG
TTTCCCGCGAGCCCAAAGATAACTCCGGCGAGTGCATGTTGTAGTGTGGTTCAGAAGGTCAATGCACCGTGCATGTGCTC
CAAGGTCACCAAGGAGATTGAGAAGGTGGTATGCATGGATAAGGTGGTGTATGTCGCTGATTACTGCAAGAATCCACTCA
AACCTGGCTCCGACTGTGGCAGTAAGTGTTATATTTTGAGCCATGTATTATGTACCCCTAATACTTGTCATGAACTATGC
ATGACATGCTTTTGTTTTGTAATATTTTCGCAGGTTACCATGTCCCATCTCAAGGCCAATAGATGGATGTTTTGTATCTG
GTAATCAAAGGAGAAATGTTGATTTAGTTCCTAGGCCTCTATGTTGACTGGATTCCGCTTTTATGATATGTGATAGGTTA
AGTTTATGTTGAGTAATTCCTAGGGAATGTGGTCGGTTGTGGGGTGGAAGATCCATCAATGTATGAGTATTAATAAATAT
TTCTCCTCAAATTACATGCTTCCACTATTTTGTTTTTGTTTGGTTCTTTTCTGGTT-TTGATTCCTTTCAATGTGAATGG
GGATTGAAAACAAGAAAAAGAAATCTTTGACAAAAGCTTTTTTTC-TCTCACTATACGATGATAAGTCCTTTGTGATATT
GTACGGTATGTATATGCTTGCAAATGTTAAAATTCAGAGGTGGAGCTTGGACATGTGAAAAATAAACATAGAAGTAAATA
CTGGCTAAGTTGGGGTTGGTCTTCGATACACATCATAATAAATGGACTAATATACACTCTAAATATCTCATAAATATATA
CTAAATGTATAATTAATGAGATATATGTTACAAATGCCTCGATCTTTATTAATAGTGTGCATTAATATGATACATGTATC
CAGCCTGGATGTGTCTGGATGAGTAAATGTGTTCAATAAATAGCTACATTTATTGAGATCGGTCAGTACAAAAA----AT
AAGTGCTCATAGGTTACTACAAGACAAACCCAATGGACCATTGGTATGGTTGTGAATTGGTGGTGGCGCTACGTGGTGCA
ACCATTGGTACGAGCGCTCCATTTCTAGTGTTGATGAAGTGGTGCTGTCACCCCGTGGTATGACCATAGGTATGAGCCGG
AGCACTCGGACCATGTGTCATATTACGCTTTGGTTGCTTTGTTGAATTTTCGCCCAAAAAGGAAGTAGCTCCAAATGACT
TCATTTGATAGGATGTTGGTTGGTTTTCTTCCATATGTTCATTCCTGCACATCAATAGTAACAACAAGTTTTCTTCTTTC
TCGAAGGATTAGTGTTAGAAAGATGCGAGA
>chr3A_1
CGCTCTTGAATCCTTGAATAGACCTGAAGAATCTGATACCAAATATTGCCGTTGCGTACACACGACAAGAAACG--AATC
TCACTACCCCGAGGAGTCAAAAATACAAATATGTACTCCACTGTAGAAGTAAATGTTGGACTCTAGTAAGTGCCACACAT
AAGATACGAGCACATGCCAACTTAGAACATTTTTTATGGTAAGTTTAGTTATGCGAGGATGGCAATTTTAGTTGGCAAGC
ATGGCATCTTTGTGCTTCAGTTTATTTTTCGATGGAAACTTGTCGTGTGTCACTGGAATTTGTCATCTTTGCGTGACTGG
AATTGCCATCGAATAATGTCAGTTGCCGGAGTGCCACGCACCTGACGTGTGTCACTTATCATTTAGGTAAATATTTGTTG
AAATGGATTGATGCTTCAATACACATCATAATAAATGGTCTCATAATTATCTCACAAATATATACTAAACATATAATCAG
TGAAATATATGCTGCAAATGCCTTGGTCTGCATTCATAGTTTGCATCAATATGATACATCATACATGTATCCAACCTGGT
TGTGCATGGATGTATTCATTAAATAGCTGCCTTTGTTGAGATGGGTCAGTACAACAAACATAAGTGCTCACAATTGACTA
TAAGACAAACAGAATGGACGATTGAAATTTCTTAGAAAACATTATATTTTGGAACATATATGCAACGCAACAAAGAAACA
GAAGTGTAGACACGTGTCTACATAGGAACTAAGTGTTGACACTTGTCAATGTAACAAACGCATGTGCGTACATCTGTCTA
CATGAGAAACAAAAGTCGTGACACTTGTCAATCAGCACCACCTACGCCTTGATTGAAATAATTATTTTCCCTCGGGTGAA
TTCATTCCCATCCATGCGCCTATATAAACCCAAGCATCCAACAGAGGACAACCACACCAAAACAACACAACTCTAGATTT
AACATCTAAGAGAGAGGTAGCCAACCGATTACTACTGGTAGTAGTTATGGCAAAACACTTTAGTTTGCTCTTGGTTCTTG
CCTTTGTTCTTGTTGTGATGGCTGAAGATTGTACCGTCGACCTAAAAGGGCTAATCCGAGAGTGCAAACCATATGTGGTG
TTTCCCGCGAGCCCAAAGATAACTCCGTCGAGTGCATGTTGTAGTGCGGTTCAGAAGGTCAATGCACCGTGCATGTGCTC
CAAGGTCACCAAGGAGATCGAGAAGGTGGTATGCATGGATAAGGTTGTGTATGTCGCTGATTACTGCAAGAATCCACTCA
AACCTGGCTCCGATTGTGGCAGTAAGTGTTATATTTTGAGCCATGTATTACGTACCCCTAATACTTGTCATGAACTATGC
ATGACATGCTTTTGTTTTGTAATATTTTCGCAGGTTACCATGTCCCATCTCAAGGACGATAGATGGATGTTTCGTATCTG
GTAATCAAAGGAGAAATGTTTATTTAGTTCCTAGGCCTCTATGTTGACTGGATTCCTCTTTTATGATATGTGATAGGTTA
AGTTTATGTTGAGTAATTCCTAGGGAATGTGGCCGGTTGTGGGGTGGAAGATCCATCAATGTATGAGTATTAATAAATAT
TTCTCCTCAAATTACATGCTTCCTCTATTTTGTTTTTGTTTGGTCCTTTTCTGGTT-TTGATTCCTTTGAGTGTGAATGG
GGATTGAAAACAAGAAAAAGAAATCTTTGACAAAAGCTTTTT-TC-TCTCACTATACGATGATAAGTCCTTTGTGATATT
GTACGGTAAGTATATGCTTGCAAATGTTAAAATTCAGAGGTGGAACTTGGACATGTGAAAAATAAACATAGAAGTAAATA
TTGGCTAAATT-GGTTGGTGCTTCTATACACATCATAACAAATGGACTAATATACACTCTAAATATCTCACAAATATATA
CTAAACGTATAATTAATGATATATATGCTACAAATGCCTCGATCTTTATTAATAGTGTGCATTAATATGATACATGTATC
CAGCCTGGATGTGTCTGGATGAATAAATGTGTTCAATAAATAGCTACATTTATTGAGATCGATCAGTACAAAAA------
AAGTGCTCATAGGTTACTACAAGACAAACCCAATGGACCACTGGTATGGTTGTGAATTGGTGTTGGCGCTACGTGGTGCA
ACCATTGGTAGGAGCGCTCCATTGCTAGTGTTGATGAAGTGGTGCTGGCACCCCGTGGTATGACCATAGGTATGAGCGGG
AGCACTCGGACCACGCGTCATATTACACTTTGGTTGCTCTGTTGAATTTTTGCCCAAAAAGGAAGTAGCTCCAAATGACT
TCATTTGATAGGTTGTACATTGGTTTTCTTCCATATGTTCATTCCTGCATATCAGTAGTAACAACAAGTTTTCTTCTTTC
ACGAAGGATTAGTGTTAGAAAGACGCGAGA
>SNPs
-----------------------------------S------------------------------------S-------
---------S--S--------------------------------------------------S-------S--------
------------------------------------------------S----S---------S----------------
---------------------------------S----------------S-----------------------------
------S------------------------------S------------------------------S-----------
---------S----------------------------------------------------------------------
-------------------------S------------------------------------------------------
-------------------------------------------S-------------------------S----------
-------------------------------S----------------------S------------S-------S----
-------------------------------S------------------------------------------------
--S---------------------------------------S--S----------------------------------
-------------------------------------------------------------S---------------S--
-------------------------------------------------------------S------------------
----------------------------------------------------S--S--S----------S----------
--------------------------S------------------------------------S--------S-------
-----------------------------------------------------------------S--------------
-------------------------------------------S------------S-----------------------
------------------S----------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------S-----------------------
------------------S----------S--S----------------------S--------------------S-S-
--------------------------------------------------------------------------------
---------S---S-----------S--------------------------------------------S--S------
------S----------------------------------------------------S---------S----------
------------------------------S-----------S-------S---------SS---S-----S--SSSS--
------------S-S---------------------------S--------------------------S----------
--------------------------------------------S-------S----------------------S----
----------------S-----S------------------------------------S--------------------
----------S-------------------------------------------------S-------S-----------
------------------------------
>forward_224
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--------------------------------------------TTAGCTACGTGAGGATGGCG----------------
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>reverse_1193
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------------------------------------------------------------------------CTGTGCTC
CAAGGTCACCAA--------------------------------------------------------------------
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>forward_1093
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---------------------------------CCGTCGACCTAAAAGGGCTT---------------------------
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>reverse_2263
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----------------------AACGCTTTGGTTGCTCTGTT--------------------------------------
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