>input_sequence_80915
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--------------------------------------------------------------ATGGCGCCCAAGGCGGAG
AAGAAGCCGGTGGCGGAGAAGGCCGAGAAGACCACGACGGCGAAGAAGACCAAGGCCGAGAAGCGGCCGCCGGCGTCCAA
GGAGGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCA
AACAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAGCGACATCTTCGAGAAG
CTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACGTCAAGGGAGATCCAGACCTCCGTCCG
CCTCGTCCTCCCTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAG-
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>chr6A_1_TraesCS6A01G040200
ATGGCACTACTTTTGTAGTCGAATTCGAGACAAGACAATCTAATGACATAGGATTGTTTGATCTAAGCACACGCGATGTC
AGTCTGAAATTTGGGCGGTCGACCGACGCCTAGAGTCGGCCCTTCAAAAAGTGTGTGTAACGTATCCTGCAAAAAAATGT
GTGTGGTCCGCCTAGGGAGCCCCTATTCCACAC-----------------------------------------------
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--------------------------------------------GAATTAAAAAAATGTTCATGATTTCAAAAGAATGAA
C-TTTTTTATTTTGATGAATAATTTTTATGAGCATTTTTCAATAATGATGAACATTATTTGGTATTTGATGTACAAATTT
TGAATCCGATGAACAATTTGTGAACTTGATGGAAATTTCTTTTATTCTAGAACCTTTTTTTAAAAAAAATTAATGAACAA
TTTTTGAATTCAATGAAAAAAATTTGAATTTCG-TGAACATTTTTTTGAAAATGGATGAACAAATTTCGTATTTGTTGCA
CATCTTTTAAATTCGGCGAACAAATTCTGAATTTGATGAACGTTTTCTAAATCAAATGAACAAAAATTAAATCCGATAAA
CAAAAAATGTTCCCGGATTAGGTAAGAAAATTCGCAAAAAAGGATGAAAAATTAAAGAAGAAAAAGAGAAAATAAAGAGG
CAAACAGAAAAGAAAAAGGGAAAAAAGGGTTTAGGGAAGGATTTAAAACCTTT-------CGGATTGGGTGAAAGCCGAA
AG-------------------GTACGCGTCAAATATCAACTGACGGTACGATGTGTGTACTGGT------ACATGCATGG
CCAGGATCGTT----------------------CACGTTTCAGCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGCCG
TCCACCCCAAACATCAGCCGACGGCTGAAACCGCTCCACGGCATCGATCCGAGGCACCAGCCTCTCCACCAACCACAGCC
CGCCTCCTTCCTCCATCCAGTTTCCTACATAAATCTCGCCGCTCCCTCCGT-----------------------------
--TCACCGTCGATCCAAACT-CATCTCCCCACACCCTCGAATCATCAGCCT---CAGCTCCCATGGCGCCCAAGGCGGAG
AAGAAGCCGGTGGCGGAGAAGGCCGAGAAGACCACGACGGCGAAGAAGACCAAGGCCGAGAAGCGGCCGCCGGCGTCCAA
GGAGGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCA
AACAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAGCGACATCTTCGAGAAG
CTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACGTCAAGGGAGATCCAGACCTCCGTCCG
CCTCGTCCTCCCTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGG
CTTCATCCTCGTTTCTCAATCCGTTGGACTCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTAATCTTGTGCT
GCTTGTGGGTCTGAAGAAATATTCATAGGACTGGTTAATGAATATTTTTGCCGCTTGAAGAAATATTGTGTGTCACATCA
GATTCTTCTTGCTG-TGTGTGTTTTACTACTCGGTTTCATCTGGAAGGGGTTCATGGG--------------------AT
GGCCATGAAATACTTCATTTTTCTTCTTTGTACCTTTC------------------------------------------
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------CCTTAGCGAACAGTCTCTGCCGATGCTGCCTCTGAAGTTGCATG------------------------------
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--------------------------------------------------------GAGCTTGCCTTTGTTCTCCTTTTA
ATT-TGTACTTGTATTTGTAGTTTGTATTTCTGT----------TGATTCTTGTAGTGCTGTTCGTGTT-G--TGTTGTG
AGGCCACTAG-CTTTGAATCAGATGAACATGCCGAT--------------------------------------------
-----TTTTGTGTTCTCTGTTCCACAATGTGATGGAGGTGTGACAGTTCTATATGCACAAAGGAGACTCTGAATAGCATA
GTGATAACATCATTACAAGAGCTATGTTATCTGTCTGCATTTCTCTTGCACCAAATCTGAGAGTTATTTCAGACTTTCAG
TTGACACTGCAACATTCCAGTAGAATTTCTCAAGTTTTTCGAGGGAAGTAGAAGTACT----------------GTATGC
TTAGTTGCAAGATTTCTGCAGGAAATAAAGTCTCTTTTAACAGTTGCAGAATCTGGTGGCGTCCAGGTCTTGCTTGACCT
TATCAGTTCAAGCCATCTTGACACTTTTATTCTAGC-GCAAGAATATGCAATCGTGACACTTTTGTTCAAAGTT-CTATC
CAGTAATCACATTACCCAAGACTGGTTTCTTGTTTCATCATCTGCTAAATGTTGCCCAGTTTATGCATCAGCGTAAATAG
CCGACAGAGGAAGCGAAAGTGCTCTTTTGATTTTCCGTGAGATAAAAACAGATTAGATTAGATGTTTATAGCACTGTTTT
CATGCACAACGCATGGATATCCTCCCTTTCAAATTC
>chr6D_1
ATGGCACCACTTTTGAAGTGGAATTCGAGACAAGACAATCTAATGACATAGGATGGTTTGATCTAAGCACGCGCGGTGAC
AGGCTGAAATTTGGGCGGTCGACCGGCGCGTAGAGTTGGCCATTCAAAAAGCGCGTGTAACGTATCCCA-AAAAAAACGT
GTGTGGTCCGTCCAGGGAGCCCCTATTCCGCGCGTGGCACGCTGGCGATCGGCCGGGCGTGCCCTCCGCTCCCCTGCGCG
TCCTTTTGGGCCGACCCATGTGGGGTGCGACGTGTCTTTTTTCTTTGAGATTTTGAATAAAATCGGATTTCCAGAAAACA
TTCGCAGATAAAAAAAATGTTCACCGAATTCAAAAACAATTCTTGAATTAAAAAAATGTTCGTGATTTCAAAAGAATGAA
CATTTTTTATTTTGATGAATAATTTTTATGAGCATTTTT-AATAATGATGAACATTATTTGGTATTTGATGAACAAATTT
TGAATCCGATGAACATTTTGCGAACTTGATGGACAAAAATTGTATTTGAACC---TTTTTTAAAATAAATTAATGAT---
TTTTTGAATTCGATGAACAAAATTTGAAATTTGATGAACATTTTTTGAAAACC-GATGAACAGATTTCGTATTTGATGCA
CATTTTTTAAATTCGGCGAACAAATTCTGAATTTGATGAACGTTTTCTAAATCCAATGAACAAAAATTAAATCCGATCAA
CAAAAAATGTTCGCGGATTAGAAAAGAAAATTCGCAAAAAAGGATGAAAAAGTAAAGAAGAAAAAGAGAAAATAAAAAGG
CAAACAGAAGAGAAAAAGGAAAAAAAAGGTTCAGGAAAGGATCTAAAACCTTCCCAAAACCGGATTGGATGAAAGCCGAA
AGTATGGGCTTCGCCTGGTTGGTACGCGTCAAATATCAACTGACGGTACGATGTGTGTACTGGTACATGCACATGCATGG
CCACACAGCCGGCTGCCAGTCATGTATCCCGTGCACGTTTCAGCCACGTCACCGATCCGCGCCAAAGCGCATCCGGGCCG
TCAACCCAAA-CATCAGCCGACGGCTGAAACCGCTCCACGGCATCGATCCGAGGCACCAGCTTCTCCACCAACCACAGCC
CGCCTCCTTCCTCC-TCCAGTTTCCTATATAAATCTCGCCGCCCCCTCCCTCCTCCCCACATCGCAGCATCTGCATCCCC
CGTCGCCTTCGATCCAAACCCCACCTCCCCACAACCTCGAATCATCAGCAGCAGCCGCTCCCATGGCGCCCAAGGCGGAG
AAGAAGCCGGTGGCTA------CGGAGAAGTCCCCGGCGGGGAAGAAGCCCAAGGCTGAGAAGCGGCCGCCGGCGTCCAA
GGAGGGCGGCGACAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGA
AGCAGGTGCACCCGGACATTGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAG
CTTGCCGGCGAGTCCGCCAAGCTGGCCAGATACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCG
CCTTGTCCTCCCCGGCGAGCTCGCCAAGCATGCCGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGG
CGTCAGTCTCGTTTCTGAACCCGTTGGATTCTGTATGTAGTTAGGTGCAAGATTGTCTTCTGAATTTGTGATCTTGTGCT
GCTTGTTGGTCTGCAGAAATGTTCATGGGACTACTTAATGATATTCTTGCT-GCTTGAAGAAATATTGTGTGTCACATCA
GATTCTTCTTGCTGTTGTGTTTTTTGCTACTCGATTTCATCTGGAAGGTGTTTCTGTACCACTTGATGGAACTCTAACAT
GGCCATGAATTACTTCATTTTGCTTCTCTGTACCTTTCCCTTAGCGAGCAGTCTCTGCAGATATTGCCTCTGAATTTGCA
CGGAGCTTGCATTTGTTCACATTTTAATTTTGTACTCGTATTTGTAGTTTGTATTTCTATTAAAAATTCGTTATTCTTGT
AGTGTTGTCCATGACGTGTTGTGAGGCAACTAGCTTTAAATCAGATTCATATTCTTATTGCTTTTGTGTCTATTACTATT
CGATTTCATCTGGAAGAGTTCTGTACCACTTGATGGAAATCTAAGAAAGGCCATGAAATGCTTCGTTTTTCTTCACTGTA
CTTTTTCCTTAGCAAACAGTCTCTGCAGATACTGCCTCTGAAGTTGCATGGAGATTGCTTTTATTCTCATTTTAATTCTG
TTAATAGTTCGTTATTCTTGTAGTACTCTGTTCTCCATGTGTTTTCTGTTCCACCAAGTTCACCTCCTCCTAGGCTTCAG
ACGCGTTTTTGAATCCGTTGGATTCTGTATGTAGTTAGCTGCAAGATTGTGTTCTGAATGTGTGATC-------------
-TTGTGCTGCTTGTGGGTCTGAAGAAATGTTCATGGGACTGCTTAATGAATATTCTTGCCGCTTGAAGAAATATTGCGTG
TCACATCGGAATCTTCTTGCTGTTGTGTTTTTTGCTACTTGATTTCATCTGGAAGGTGTTTCTGTACCACTTGATGGAAC
TCCAGTAGAATTTCATCAGAAACAGTCTCTGCAGATACAACCTCTGAAGTTGCACAAAGCTTGCCTTTGTTCTCATTTTA
ATTCTGTACTAGTATTTGTAGTTTGTATTTCTG----------------------GTAGTACTGTCCATGTCATGTTGTG
AGGCAGCTAG-CTTTGAATCAGACGAACATACAGA---------------------------------------------
------TTTGTGTTCTCTGTTCCACAATGTGATGGAGGCGTGATCGTTCCATATGCACAATGGAGAGGCTGAATAG----
-------CATCATTACAAGAGCTGTGTTCTGT-TCTGCACTTTTCTTGCACCAAATCAGGGAGTTATTTCAGGCTTTCTA
TTGACACTGCATCACTCCAGTAGAATTTCTGAACTTTTTCGAGGGAAGTAGAAGTACCGAGTTAAAGCAGCACCGTATGC
CTAGTTGCAAGATTTCTAAAGGAAATAAAGTCTATTTTAACAGTTGCAGAATCGGGTGGCGTCCAGGTCTTTGTTGACCT
TATCAGTTCAAGCCATCCCGACACTTTTATTCAAGCGGCAAGAATATGCAATCGTGACACTTTTGTTCAAAGTTTCTATT
CAATATTCGCATTATCCAAGACCGGTTTCTTGTTTCATCCTCTGCTAAATGTTGCCCTGTTTATGCATCAGTTTAAATAG
CCGACAGAGGAAGCGAAAGTGCTCTTTTGATTTCCCGTGAGATAAAAACAGATTAGA-----------------------
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>chr6D_945
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--TCACCTCCGATCCAAACCCCACCTCCCCGCACCCGCGAATCATAATCAGTAGCAGCCCCCATGGCGCCCAAGGCAGAG
AAGAAGC-GGTGGCGA------CCGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCCGCCGGCGTCCAA
GGAGGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGA
AGCAGGTGCACCCGGACATCGGCATCTCCTACAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAG
CTCGTCGGCGAGTCCGCCAAGCTCGCGCGCTACAACAAGAAGCCCACCATCACCTCTAGGGAGATTCAAACCTCTGTCCG
CCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCAAGGCTGTCACCAAGTTCACCTCGTCCTAGG
CTTCATCCTTGTATGGACGAATCGATGGTGGC------------------------------------------------
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---------------------ATTCTGTATGTAGTTAGCTGCCAGTTTGTGTTATGAAGATGTTATCTTGTGAGAATCAG
ATTGTATCGCTTGCCGGTCTGAAGAAATAGTAATGTTCTTTTCAGTGTAACTTTCCGCCTTTGTCTGATTCTTGTGCTGA
CTACTATGGTTTGCAATTCCT-----------------------------------------------------------
-----------------------------TGCAGATACAATCTCTGAAGTTGTAGAGAGATTGCTTTTGCTC------TA
ATTCTGTACTAGTATTTGTACTTTTCTTTTCTGTCATTAATCCATGATTCATGTAGTACTACTGTCCATCG--TGTTGTG
AGGCAGCTAGGCTTTGAATCTTTGACTAGGAGGTGCCATTTTGCTGAAAAGGAATGGACTCCTGTTTCCACGATTGACCT
GCAGATTTTGTGTTCTCTGTTCCACAATGTGATGCAGACA-GACGGTTGCATACGCACAATGGAGAGGCTGAA-------
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>SNPs
-------S-------S---S----------------------------------S---------------S----S--S-
--S----------------------S---S------S----S---------S-S-------------SSS-------S--
----------S-S----------------S-S------------------------------------------------
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-------------------------------------------------------------S------------------
---------------------------------------S-------------------------------S--------
---------------S----S------------S-SSSS--S----SS-SSSSSS----------S----------SSSS
-----------S-----S----------S--S--------------SS---SSS--------S------------S----
---S-------------------------------------------------S-----------------------S--
------------S--------SS----------------------------S------------------------S---
---------S---------S------S----S---S------S---------S---------------S-----------
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---SSSSSSSS---------------------------------------------------------------------
--S----S--S--------------------------------------------------S------------------
--------------S------------S--------------S------S------------------------------
-------S-----------S---S-------------------------SS-----------------------------
---------------SSSSSSS-----------S--S---S-------S-------------------------------
------------------------------------------------------------------------------S-
-S-------------------------------------------------------------S----------------
--------S-----S--------------------------------------S--S-----------------------
------------S--------------------------S----------------------------------------
----------------S--S--------S---------------S-----------S--------S---S----------
------S------S------S-----S-----SS-------SSS-S--SSSS----------------------------
--------------------S----S-------S--------------S---SS--SS----------------------
---------S-----------S-----S----------------------------------------------------
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-------------S------------S---S-------------------------------------------------
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--------------------------------------------------------------------------S-----
----------S---------------------------------------S------S--SS-SSSSS------------
----SS-----------------S------S-S--S--------------------------------------------
--------------------------------------S-----S----S----------S-----SS--------SSSS
SSSSSSS----------------S----S-S-S------S--S--------------S-S------------S-----SS
-----------S--S---------------S--S-----------------------S----------------------
S----------------SS--------------S-------------------S-----------------SS-------
-----------------SS-------------S----------------------------------------------S
--S--S--S-----S-------S----------------S-----------------S-------------SS-------
---------------------------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_83
---------------------------------------------------------------TAAGCACACGCGATGTC
AGT-----------------------------------------------------------------------------
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>reverse_2786
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-----------------------------------------------------------------TGTTGTGTTGTGAGG
CCACT---------------------------------------------------------------------------
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