>input_sequence_80913
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------------------------------------------------------------------------ATGGCGAA
CGCGGCCAAGGCGGCAGCAATCTTACTTGTTTTTCTGCAGGTGGTGTGCGCCGTCGCCCGGCACCATGCTGATCCGCGGG
CATC---TTTCGCCTACGTCGAGACTTCAGGGGTGATGATGTTGAGTGGGTTCGACCAAGGAGAGGAGCGCGCGCCGGCG
TCATGCGGCGGCACATACCACACCGACCTGGAATCCGTGATCACGGTGTCTAGCAAGATATACACGAGCGGGGGCCTGTG
CGGCATCTTGTTCCGCATCACGGACATGGAGACCGGGCGCAGCGCGATGGCAGAGGCCGTGGACGAGTGCCACGACTGCC
GCGACGACGAGGTGGGAGCGTCGGCCGGCGTGTGGAAAGATCTCGGCCTCGAC---ACAGGGGCCGGCTCGGTGGACGTC
ATGTTGTCCTATTGA-----------------------------------------------------------------
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-------------------------------------------------------
>chr5D_1_TraesCS5D01G277800
CCGGCCCATGAATTTATCCGACGAGGAGGGGAAAAAGGAAAGAAAAGGAGCAGACTACTGGGATCAAACCCTCGTCTCGT
GGGTGCAAGGTTGAGTCCTTAACCATTACGGCAGTCGTGTGCCTGTGAAGTATTAGGACATCACAGTATAAGAACCAAAC
ACCACGGTGACTTTGAAAAAAACAGAATCGATTTCTTCACTTACAAGTGGCATAGTGGATAATTTATAGCAACTTTGGGG
GCAATTTTTAGACGGACAACCAGAAGCATTAATGACTTTATTATTAGGTATAAGTATAGAGGTATAGATATCGATATAGA
GGTAGAGATTAGGTAGGTATAGATTGTGATGATATGAGAAAAAGGAAAAGGAATCCGACCATTCGCTGGTTGGTTGTATC
ATATATA-------------------------------------------------------------------------
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--------------------------------------------------------------AAAAAAAGGAAGAGAAAA
ACGTTATGAGGACACGCTGGTTCGTTCGTTCGTTGACCACGTGTTCGTTTGCAATCGATGGATCGATTGTACTCCCTTCA
TTTTAAAATATAGTGCGCCCGCGCTTTCTGAGGTTCAACTTTGATCATAAATTTAACCAACAAGACTGACTGCGGCGGGA
G-AAAAAATTATATAATTGAAAACTTTTTTTGAATACGAATTCACTGGTATAAATTTTGCTCCTGCCGCAGTCGGTCTCG
TTTTGAATACTAA-------------------------------------------------------------------
-----------------------------------------CTTGGCGTGGCATGACTGAACCAACAAACGCATGCGCAG
TCAGTCTTCTTTTGAATACTACTGAATTCGTATTCAAAAGAAGTATATACAGTGTATATCTCACCTTGGAGCCGTCAGAA
ACTATGAATTAATCTTGTCCCTTTCGCATGAATTGAAAATCCACACCAGTTCCCTATGCCACGAATGTCCAGT-------
----------------TCCACTGCAGCGCGAGCATATACATAACTCA-TCATCATCGAGAGAAAGC---TAGCACACAGG
GCAAGCAAAGCTAGCTAGCTAGCTTATAA-ACGCACGCAAGCGGGAGGTCGCTCCTCAATTACCAATTTACCATGGCGAA
CGCGGCCAAGGCGGCAGCAATCTTACTTGTTTTTCTGCAGGTGGTGTGCGCCGTCGCCCGGCACCATGCTGATCCGCGGG
CATC---TTTCGCCTACGTCGAGACTTCAGGGGTGATGATGTTGAGTGGGTTCGACCAAGGAGAGGAGCGCGCGCCGGCG
TCATGCGGCGGCACATACCACACCGACCTGGAATCCGTGATCACGGTGTCTAGCAAGATATACACGAGCGGGGGCCTGTG
CGGCATCTTGTTCCGCATCACGGACATGGAGACCGGGCGCAGCGCGATGGCAGAGGCCGTGGACGAGTGCCACGACTGCC
GCGACGACGAGGTGGGAGCGTCGGCCGGCGTGTGGAAAGATCTCGGCCTCGAC---ACAGGGGCCGGCTCGGTGGACGTC
ATGTTGTCCTATTGAGAGCCTGAGAGGTCGGCTGGTGTACGTCGCGTTTGCTGGCTACGGCCTTGTATCCCTTTACGCTA
CCTTCTTTGAACCTTGTTTGAACCTCGTTTGTACTCTAAGGGCCTCAGTTTAAGGCCAGGCAGATGCCTTCTCTCTCTAA
ATATGTAGAAGGACATCTGAATAAAGCAACCTATACTTGTCTATAGGTGTGAATAAGTGCAAGTCTCTATTATTTGTTTT
CAACTGCTAAAGACATAGTACAATACACATTTCCTCTTCTCTCTCACGGAAAGAAAGGCGACCCCGTCCGTACCGTCCCC
TTGGTGAGGCCATTGTCTCCTCCTTCGTTTGCCGATCCGATGAAGAAGGGGGCGGGAATCCTGGATCTGTCTTATGGCGA
TGTAGTTAGGTCTCTTTGGGAATAAGGTTTTGCTGCCCAAAGGTGGCGTTGTGGTGGTGATGGCAGCGCCTTTAGGGCCA
GTTCTTTTCCTGGCTTTTTTTGGCTTTCAGAATAAGCTGCCCCCTACCCAGCTTATTCTATAAGCCAAACCAATTTTTTT
CTTTTAGAAGCCTACTAGTCAAGTCTTAACTATTAGACTTCTAAAAAAATAATTTTGGTCGGGCTTCTAGAATAAGCTGG
TTAGGGGTAGCTTATTTGAGCTTATTCTAAAAGCTAGCAAAAGAACTGGTCCTATAGATTTAGATGTAGACAAACACAAC
CCAATCGCTATTCTGGATCCCATTCTTTTAGTGAAGAACGACACAACACGCCTGGTCACATCCCCAAACTCTAGGGGCCC
CATCCCAGCTATGCTCCCTGTACGCATGAGGCCCGAGGCCTGCTGCTACGATGTGTGAGGAGAGGAGGTAACTTCTATTT
TTTCCATCCAAGATCGTGGTTGTTAGAGCATCTTCAACGGCCGCACAAAAATCTCGCGCCCAATAAAAGTTATAGCGCGC
CACTGTAGTATTTTTAGTGCACCGGGACCAACATTGCTTTAGCAGACGCCCAAAG
>chr5A_41
----------------------------------------AGAAAAAGAGCATACTACTCGGATCAAACCCTGGTCTCGT
GGGTGCAAGGATGAGTCCTTAACCATTACGGCAGTCGTGTGCCTGTGAAGTATTAGGACATCACAGTATAAGAACCAAAC
ACCGCGGTGACTTTGAAAAAAACCGAATCGATTTCTTCACTTACAAGTGGCATAGTGGATAATTTATAGCAACTTTGGGA
GCAATTTTTAGACGGACAACCAGAAGCGCTAATGACTTTATTATTAGGTATAAATATAGATATATAGATATAGATATAAA
GGTAGATATTAGGTAGGTACAGATTGTGATGATATGAGAAAAAGGAAACGGAATTCCATCGTTCGCTGGTTGGTTGTATC
GTATCTATACTATTATTAAACAAGGAAACATTATCTTTTTTAAGTGTACCTCGTCTAATGTACACACAACAACCCAAAGT
AATTAGAGCCTCAGGATTAAATCCACTTATTTAGATCTAACCGTTGAAATGATAATTAACCCTGACCAAAGGTACATTTA
GCGATTTGCGGGGCGGACGAAAACTCTGCCAACCGCGTCCGCTAATCCACTAATCCATCTCTCCGCTAATCCCTCCATGA
CTTCCGCTCTGCATCGCACATATCCTCCCCCGCCGGCTCCGCAAAGGCCGCCACCCGCTGCCCTCGAAACCCACTTGTTC
TCCGAGCGCCGCTGCCCCTCCCGCTGCGTCGAGCTCGCAGGCCACAGCCGTCGCCGCCGCTCAATCTCTCCTGCGACCAT
GGCGCCTCCTGCGGCATCCCCACCAGTGTCCCCGACCTGGCAGCTTTGTCCGCTCCTACGGTGTCATCCTAGACGAAGCC
GCTGTCAAACGCGTCCGCGCCGTGCGCTGCTGGAGGGAGGGGCCGCATCAGCTGTCGCTGCCGTGCGCCTGGCCAAGCGC
TGCGGCCAGGGAGTGTCGCCGCGCCATGTGTGACGGCGGGAGATAAGGTCCGGGCCGTGTCGTTCTTCACTAACGCCGCC
ATGCGCCTGACGTGGACGGCCTTGGCCGCCGACGAGAGCCGCGGTCGCCACGGTTAGAGATGCCAAGGCAAAGCTGCACC
CGGACGGGGTTGCTCCTGCAGTGCGGGCCATGGCCGAGAGCGACTCCAACGAAACCATGGCCGTCGTCACGAGGGCGAGC
GCGCTGCGCCAACGGCTGGTGCCCCAGAAGGCGCCGCCAAAGCGCACGGCAGAGGACGGCGCTGAGCAGCGGGCGGTATC
GTCGGATCTGGCAGCTGCCGAGAAACCGCGCGACGCACTGAATCCTGATTCACACCCACTGTACGCAGCCGGTCGGCTCT
CACACATCCGACTTCCACCGAGAATACGACATTCGTGGACGCTGCTCTCACCCTTCACAGGCGTTCGTGGCGTTGTATAT
TTGTGTTTGCAGCTCACTGGCTTGAGAGGGGTATCCTTGGGAGAGGATGAGTTGCCCAAGGCAATGCTTGTTGCAGCAGC
AATTTATGACTAGAGCCGGGCAGAACAATCTCTCAAATGGACCGGGGACCTCTCTTATTGACAGCATAGATTTTGATCAG
ATTGTTATTCCTGAGGTATGGCACATGTGCTTCATAGTTCTTGATTGGTTTCGAAAAAGGAAAGAAAATATATCACCATG
GCAGGAAGCTAATTTCAGGGTTATCAGTTAGGTCCACTCTTTCCTCCGACAAGATAGTTCTTGCATGTGCGCTAATGTAC
TGATGTGTATAGGATTTGCATGCGACATTCCTGAAGGTAATAAAATGTGTACACTTGACCTTCTGCCACATAGATTGCAT
TTTAAACTGAATTACCGAGCTACCTGGATTCAGTAATTTAGCCGTTTCGTGATATTGCAGATGCTGTGATACTATAAAGC
AAATATAATTTGAAATATTAGTTTGTGATAGGGAAACTGTCAGGTAAAGTTGTAGTTTTATTTAACCAGCTTCGGTGGTT
GCTTATTCGTTTCAGTAATTGGAACTGCTTTTGCTTTGAACATGCCCTTCAAAATTCTGATATGGTGTGGTGTTCTCATA
AGTGGGCTCAGCACTCTGATGCCCCTGTTCCTGCAACAATACAAGGTAAGAACATCTAATGTTTACATTCACACTAATTT
TCACCAGTTAGTATTTTTTTATTAAGTTCATTTTTTAAGGGATGATGTGTTTGCTTTCACTTGTGATATAACAAAACTAG
ATCAAGAGTGATACCGAAGAAGTGAAGATGCAAGTATCTGTTTCCACGAAGATCACTCCTTTGGACTTATATTGCTTTTA
GGGAGGGAGTATAATTTTACCACACCTTGTACTTGACTTCCATAATTTTACCACACCCAACGTCTCTTGATCACTCAGTT
CTAATTGTGCAATGTGGATCTGAAGGTGGGAGTCAGTAATTACTGTACTCCGAAACACTGGAGCGTGTCAGGAATGTGTG
GTATAAACATGATGGTGTGGTTCCCCCTACATCATTGCTTGAAGTCTTATTTGAGGTTTCATCATGTTTTTGTGATTTAG
AAGCTGACCTGCCTGAAAGCCTGAATTCTTTTCTTTCCATCTTTATTTTATCCGTTCGCATTTCAGCTTCTGTACGTACA
GACTATGATATAGCTTTGTAAGTTAATCAGGTTACCAACACGTAAGCATTTGTGAAACCGGAAAAATACTTTGTATCGTG
ATGATTATTAGATTACTTTTAGCCCTTTTATTTGAAACCGGAAAAATACTTTGTATCATGATGATTATTGGATTTCTTTT
AGCCCTTTTACCCGAAACTGGATAAATACTTTGTATCGTGATGATTATGGATTTCAAGTATCTTTTAGCCCTTTTATACA
TAATCTTCTATTTCTGCACATATATAAGTTGATGTAGCCACATATCATCTGTATTTTCTATTATCCATAATAAGAAGCTA
TATAATGCTAATCCGAATTAGTACTAATATATAATTTTGGTAGTCCACATAACCAAAATTAGTACTAATATATATATTTT
GCTATGCAAATGTAGAATTGGCATTCGTAGAATAAAACAATAGTCAAGAGGTAAGCATCTTGAACAAAGCAATTGCACCG
TAAGGCAGTTTATACTTCTTTTTCCTTGGAACACTCGAAGACAAGACTGCACCACACGGAAATCTGTTGGTGTTCCCGGG
AGCGCGCGATCCTGCACGCGAAAAAAATATTTCAAAGTTGAAAAAATTACAAACAAAAATTTTGCGCATACATCTCGACA
TTATATGTGTGCACGTCAAGTTTTGGAGAAAATCGATAATTTTTGTGGCTTGTGTGAAAAGACAAAAGGATATTTTGTGA
AAAGATTTTTTAACACCGAATTTTGTCTTTTTCACACACGACACACAAGTTGTTAGTTTTTCGCCGAACGACTTTGTGAG
CATGTACAATATCAAGATATATGCGCCAAGTTTTTGTTTGAATTATTTTGACATTTCAAAATAGGTTTAAAACATATTTT
TAAAAACAAAATTGCGTGCTCCCATGTGCCAAAACGCCACTCTCTTGGATCAGGCCTATATTACTACACTAATAAATAAT
AATTCCTGATTTTATTTAAGTAAGAATATTTTTCCTGCGATTACTCTACGCAGCTACATAACTACAATGTTGTCTCACTT
TTGAAAACAGAATTTGAGTGACATCAAACATTGTGTATTGATTTGATTAAAAAAATTGCAACATTTATTTGTATTTTATA
CTATGTGAATCTCACCTGTTTTACGATTGAGACGTGCGTTGCATGTGCATACTTACTAGTATAAAAAAAGGAAGAAACAA
ACGTTATGGGGACACGCTGGTTCGTTCGTTTGCTGACCATATGTTCGTTTGCAATCGATGGACCGGTTGTACTCTCTCCA
TTCCAAAATATAGTGCATCCGCACTTTCTGAGGTTCAATTTTGACTATAAATTTAACCAACGAGACCGACCGCATCGGGA
AAAAAAAATTATATAATTAAAAATTTCTTTTGAATACGAATTCACTGGTATAAATTTTGCTCCTGCCGCAGTCGGTCTCG
TTGGTTAAATTCATGGTCAAAATTGAAGCATGGAAATAAGAATAGAGGAAGCACTATATTTTGGAACGGAGGGTGTGGAA
TAAGCATGAATGGATGCATAGAAAGAGGAGATTTGCTGCTGCTTGGCGTGGCGTGACTGAACCAACAAACGCATGCGCGC
GCACG------------------------------------AGTATATACGAAGTATATCGCACCTTGGAGCCGTGAGAA
ACGATGAATTAATCTTGTCCTTTTCGCATGGATTGAAAATCCACACCAGTTCCCTATGCCACGAGCGTCCAGT-------
----------------TCCACTGCAGCGCGAGCATATACAGAACTCA-TCATCGA-GAGAGAAAGCTAGTAGCACACAGG
GCAAGCAA---------GCAAGCTAAACGCACGCAAGCAAGCGGGAGGTCGCTCCTCAACTAGC---TTACCATGGCGAA
CGCGGCCAAGGCGGCAGCAATCTTACTTGTTTTTCTGCAGGTGGCGTGCGCCGTCGCCCGGCACCATGCTGATCCGCGGG
CATC---TTTCGCCTACGTCGAGACTTCAGGGGTGATGATGTTGAGTGGGTTCGACCAAGGAGAGGAGCGCGCGCCGGCG
TCATGCAGCGGCACATACCACACCGACCTGGAATCCGTGATCACGGTGTCTAGCAAGATATACACGAGCGGGGGCCTGTG
CGGCATCATGTTCCGCATCACGGACATGGAGACCGGGCGCAGCGCCATGGCAGAGGCCGTGGACGAGTGCCACGACTGCC
GCGACGACGAGGTGGGAGCGTCGGCCGGCGTGTGGAAAGATCTCGGCCTCGACACTACAGGGGCCGGCTTAGTGGACGTC
ATGTTGTCCTATTGAGAGCCTGAGA-------------------------------------------------------
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>chr6B_767
AGTGGT--------------------------------------------------------------------------
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-------------------------------------------------------ATATCACACCTTGGAGAGGGAGGCG
ATTAAT--TTAATCTTGTCCTTTTCACATGGATTGAAAATCCACACCAGTTCCCTATGCCACGGGTGTCCAGTTCCCTTA
GCTCAGCGGTCTTGTGTCCACTGCAGCACGAGCATAA------ATAACTCATCATTGAGAGAAAGC---TAGCACACAGG
GCAAGCTA---------GCTAGGTTATAA-ACGCA----AGTGGGAGGTCGCTCAA-----------TTACCATGGCGAA
CACGGCCAAGGTGGCGGCAACATTATTTGTTTTTTTGCAGGTGGCGTGCACCGTCGCCCGGCACCATGCTGATTCAGCGA
CGTCGTCTCTCATCATCGTCCAGGCTTCAGGGGTGATGACGGTGAGCGGGTTCGACAAAGGAGAGGAGCGCGGGCCGGCG
TCATGCAGCGGCACATACCACGACGACATGGAATTTGTGATGACGGTGTCTACCAAGCTCTACACGAGCGGTGGCCTGTG
CGGCATCTTGTTCCGCATCACGAGCACGGAGACCGGGCGCAGCACGATGGCCGAGGTCGTGGATGAGTGCCATGACTGCC
GCGACGACCAGGTGGGAGCGCCGGCCGGCGTGTGGGGACGCCTTGGGCTCGACACCAAT---GCTGGCTTGGCACCCGTC
ATATTGACCTGGTGAGAGCCTGAGAGGTCGGTTGGTGTACATGCTTGCCGACGAGATAAACTGTTCATGGTAAATCATGT
TGGGGTCATACACGACACATGGATGGTGTGTGAGCCA----------------------------------------TAT
ATATGTAGGAGAACAGCTGAATAAAGCAATCTATACTTATCTATAGGTGTGAATCAGTGCAAGTCTCTATTATTTGTTTT
CAACTGTTAAAGACATA---------------------------------------------------------------
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>chr6B_870
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----------------TCCACTGCAGCACGAGCATGCATATATATCACTCATCGTTGAGAGAAAGC---TAACACACAGG
GCAAGCTA---------GCTAGCTTATAA-ACGCACGCAAGCGGGAGGTCGCTCAA-----------TTACCATGGCGAA
CGTGGCCAAGGCGGCGGCAATCTTTTTTGTTTCTCTGCAGGTCGGGTGCGCCGTCGCCCGGCACCATGCTGATCCACGGA
CGTC---TCTGGACATCGTCACGGTTCCAGGGACGATGATGCGGAGCGGGTTCGACCAAGGACAAGAGCGCGGGCCGTCG
TCATGTAGCGGCACATACCACACCGACATGGAACCTGTGATCACGGTGTCTACAAAGATATACACGAGTGGGGGCCTGTG
TGGCATCTTGTTCCGCATCACCAACACGGAGACCGGGCGCAGCACGACGGCAGAGGTCGTGGACGAGTGCCAGGACTGCC
TCGACGACGAGGTGGGAGGGTCAGCCGGCGTGTGGAAAGATCTCGGGCTCGACAACAAT---GCCGGCTCGGTGCCTGTT
ATATTGTCCTGGTGAGAACCTGAGAGGTCGGCTGGTCTAC----------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----S------S------------S-------
----------S---------------------------------------------------------------------
---S-------------------S-------------------------------------------------------S
---------------------------SS------------------------S------SS---------S------S-
------S------------S----------------------------S-----S-S-S-S-------------------
S---S---------------------------------------------------------------------------
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---------------------------------------------------------------------------S-S--
--------S---------------------S-S------SS---------------------S--S--------S--S--
--SS------------SS----S---------------S-----SS---------------S----S---S--SS-----
S-----------------S----S--S-----------------------------------------------------
--SSSS-S-S-S--------------------------------------------------------------------
----------------------------------------------------S-------------------------SS
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSS-------S--------------S----
--------------------S---------S---------------------------------S---------------
-------------------------------------------------------S------------------------
--------SSSSSSSSS------------------------------------------S--S-SSS-------------
--------------------------------------------S-----------------------------------
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------S-------------------------------------------------------------------------
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----------------------------------------S-SSSSSSS-SS-SSSSSSS-SS-SS--SSSSSSS-SSSS
SSSSS-SSS-SS-SSSSSSSSSSSSSSS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S
--------S--S---S-------------S--------S---------------S-------------------------
------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3959
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-------------------CGCGCTTTCTGAGGTTCAAC-----------------------------------------
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>reverse_5765
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----CCAGCTATGCTCCCTGTACG--------------------------------------------------------
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-------------------------------------------------------
