>input_sequence_80909
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-------------------------------------------------------ATGGCGTGGCGCGGCGCTGCGTCCC
GCACCGTCCTCGCCGCGGTCCGCCGGCCGGCACCCTCGGCCGCGGTCGGCGGCCTCCGGGCCCCTCCTCCCTTCGCGGCC
CCGCGCCGCCGGATCCCTTCCCCCTTCGCCCCCTCCCACCCCACCTCCCCGCTCGGAGCCACACGGTAAGTCAACCCCAT
CCATAATTAGGCATTCGCACTGCGCTGAGATGGCGATCTGATGTCCTCATGATGTTGTTGTGT--GCGCGCGCGCGTGTG
TGTGTGCAGGCCCCTGGCGGCCATGATGGGGTCGCCGCTGACGGCGGCGGTGGTGCTAGGACGGATGACGGCGCACCCGT
CGGCCAGCGCCCGGGCCTGCTGCGAGCTCTCCCAGGGTACCCTCTTTTTCCGCCGTACTTGTCAGGATCACTAA------
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>chr5D_1_TraesCS5D01G075800
TGTGCTGGCATGTGTGCCGGTCGCTGGAAAGTTTGTCAGCATGAACTGTGTGGTGGGTTTTTTGAGGATGGCATTGTATG
TCGGCCTCTCGCATGGCGCCGACATGAACTTTGGACGATTGCATGGCTGTTGGCATAATCTATGTCCGCGGCCTTTTAAA
ATTTATGCGTGGACATGAAATGGGTCGAGCGCGTGATGAGGACATGACTACCTTGGATACGACCAAAAATATTACATACA
TGCATATTTGTCAGGTGATTTCTAGTGCAAACCATTCAATAATCTATTTATGTTATCCAGAACAAAAATACTTCACACAC
TTTTGTGTTTTGTCTAATTGCAGGTGTATGAGATATTTGTACAATCCACATATGAAGATAAGGCAAAAGGAGAAGTTTAG
GTTATGTTCAAAAAGTCCTCTCATATGTGGATTGTACAAATATCTCATACACCTGCAATTAGACAAAACACAAAAATGTG
TGAAGTATTTTTGTTCTGGATAACATAAATAGATTATTAAATAGTTTGCACTAGAAATCACCTGACAAATATGCATGTAT
GCAATATTTTTGGTCGTATCCAAGGTAGTCATGTCCTCATCAACGCGTTGGGCGCACGACCGACCCAAAACAAAAACAGG
ACGAACACCGATCGGGCGGCCGACCCAAACAGACGAAAAACAGACAAAATGCGCGTCCGTTTGAGTCGGCGCGTTGGAGT
TGCTCTTAGGCCCAAACGTCCAGCAGCCACCACTGTCTATAGAAAAAAACAGCCGAACGATCTAAAATATCAGCCGAACA
GGATAAATATTTCTCTCTAGAAAAAAAAAGCTGAACAGCATA--ACAGAAACAAACGCCGAGTACATCGCGCATGAGCCC
GGCCCGCTACGCA-TTTTTTTCACCCTTCCTCTATTAAAACCTAAAAGCACCGGCCGCCAACGCCACTTCCAATCGCCAC
CACCACCACCG------------CCTCCACCCGCTCCTCCGCCTGAACCCTAGCCATGGCGTGGCGCGGCGCTGCGTCCC
GCACCGTCCTCGCCGCGGTCCGCCGGCCGGCACCCTCGGCCGCGGTCGGCGGCCTCCGGGCCCCTCCTCCCTTCGCGGCC
CCGCGCCGCCGGATCCCTTCCCCCTTCGCCCCCTCCCACCCCACCTCCCCGCTCGGAGCCACACGGTAAGTCAACCCCAT
CCATAATTAGGCATTCGCACTGCGCTGAGATGGCGATCTGATGTCCTCATGATGTTGTTGTGT--GCGCGCGCGCGTGTG
TGTGTGCAGGCCCCTGGCGGCCATGATGGGGTCGCCGCTGACGGCGGCGGTGGTGCTAGGACGGATGACGGCGCACCCGT
CGGCCAGCGCCCGGGCCTGCTGCGAGCTCTCCCAGGGTACCCTCTTTTTCCGCCGTACTTGTCAGGATCACTAATCTAAT
CTAAGTTAGTGTCGTGATCCCATTTTCAAGATTTTAATCTATCTAGGTAGATGGTGAATTGTGTACTTTGTTCCTAGTGT
CGACTTCTGCGTTAGTTTTTG---TGAGTTGCCTAGCAATATGTTGAAGGTGGTCATTTCTCTCGGGGTCATAGATCCAA
CTTGTTCTCTATCTGGAAAATGGATG------TTTCAGTGAGCCCAAGTTAATTGGTTCTGTAACTCTAGTAGGATTATA
AAATGATCAATACTTGAAACAGCATAAACAAAAACTCCTGCACTTTCTGTACAATGGGATAATATTGCAATGGTGAAAAT
CGAAGCAATATAAGGGGGTTATATGCAATGCATGCTTA-TTTTCTACTTCTGTAATTAAGTGACACCAAAATTGATG-TA
AGGAGATTAAAATTGGGATTTGATAGGAAATGGGGACGATGGTTGATGTTGGAGGCTGGCCAGCATGACGGGGACTTTAT
CTCCTAGAATGATGTAGGTCCCCTCCTCTTCCCAGTTCTGTATTTCTTTTGCGACTAGTAATTTAACAAACTGCAAGATA
GTAACTGCATTGAAAAAGTAAAAAAGAAAGAACATAGGTAACTGTTGA--------------GTGTTGGCTTTGTAGAAC
CGTATTACACCA-TGTGTCTCAAATGTTCAAAATGTCTTCTCTTTTTTAGCCCTTTTATCTCTTCCCAGTTAGCCCTTTG
TTGCTATACCCTTCTCTTCCTAATGCTAAAAGCACACATGCTTCACTGTTAGTTAGTTTCTACAAATTTGAATAACTATA
TTGTGCACTTCAATATTGAAACTTCAATTGATTGAGGATATGTATGGTTGGGCTTTCTTAGGGAATGGAAAAGATGGGTG
ATGCGGGAGAGGCAAGGGTAGAGCATAGCTAAGGTGCTGATTTTGAACATGTATTCTTTTGGTGATATTGTTTATTAATC
ATCATCATTTGAATGAAAGCTTGATGAGGTCTCATGGTATGGGTAGTAAAACAATTAATG
>chr5B_781
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------------------------------------------------------------TCAAAAAAATCAGCCGAACG
GGATAAACATTTCTCTCTCTAA-AAAAAAGCTGAACAGGATATAACAGAAATAAGCGCCGAGTACATCGCGCATGAGCCC
GGCCCGCTACGCTTTTTTTTTCACCCTTCCTCTATTAAAACCTAAAACCACCGGCCGCCAACGCCACTTCCAATCACCAC
CACCACCATCG------------CCTCCACCCTCTCCTCCGCCTGAACCCTAGCCATGGCGTGGCGCGGCGCTGCGTCCC
GCACCGTTCTTGCCGCGGTCCGCCGCCCGGCACCCTCCGCCGCGGTCGGCGGCCTCCGCGCCCCTCCTCCCTTCGCGGCC
CCGCGCCGCCGGATCCCTTCCCCCTTCCCCCCCTCCCACTCCACCTCCCCGCTCGGGGCCGCACGGTAAGTCAACCTCGT
GCACAATTAGGCATTCACACTGCGCTGAGATGGCGATCTGATGTCCTCATGATGTTGTTCTGT--GCGCGCGCGCGTGTG
TGTGTGCAGGCCCCTGGCGGCCATGATGGGGTCGCCGCTGACGGCGGCGGTTGTGCTAGGGCGGATGACGGCGCACCCGT
CGGCCAGCGCCCGGGCCTGCTGCGAGCTCTCCCAGGGTACCCTCCTTTTCCGCCGTACTTGTCAGGATCGCTAATCTAAT
CTAAGTTAGTGTCGTGATCTCATTTTCAAGATTTTAATCTATTTAGGTAGATGGTGAATTGTGTACTTTGTTCCTAGTGT
CGACTTCTGCGTTAGTTTTTGTGATGAGTTGCCTAGCACTATGTTGAAGGTGGTCATTTATCT--GGGTCATAGATCCGA
CTTGTTTTCTATCTGGAAATGGATGTTG-------CAGTGAGCCCAAGTTAATTGGTTCTGTAACTCTAGTAGGAATATA
AAATGATCAATACCTGAAACAGCATGAACAAAAACTGGTGCATTTTCTGTATAATGGGCTAATGTTGCAATGGTGAAAAT
CGAAGCAATATAAGGGGGTTATATGCAATGCATGCTTTTTTTTCTACTTCTGTAAGTAATTGGCACCAAAATTGATTTTA
AGGAGATTAAAATTGGGATTTGATAGGAAATGGGGATGATGGTTGATGTTGGAGGCTGGCCAGCATGACGGGGACTTTAT
CTCCTAGAATGATGTAGGTCCCCTCCTCTTCCCAGTTCTGTATTTCTTTTGCGACTAGTAATTTAACAAACTGCAAGATA
GTAATTGCATTGAAAAAGTAAAAAAGCAAGAAC--------------A--------------GTGTTGGCTTTGTAGAAC
CGTATTACACTA-TGTGTCTCAAATGTTCAAAATGTCT-CTCTGTTTTAGCCTATTTATCTCTTCCCAGTTAGCCCTTTG
TTGCTATACCCTTCTCTTCCTAATGCTAAAAGCACACATGCTTCACTGTTAGTTAGTTTTTACAAATTTGAATAGCTACA
TTGTGCACTTCAATATTGAAACTTCAATTGATGGAGGATATGTATGGTTGGGCTTTCTTAGGGAATGGAAAAGATGGGTG
ATGCGGGAGAGGCAAGGGTAGAGCATAGCTAAGGTGCTGATTTTGAACATGCACTCTTTTGGTGATATTGTTTTTTAATC
ATCATAATTTGAATGAAAGCTTGATGAGGTCTCATGGTATGGGTAGTCATACAATTAATG
>chr5A_818
TAG-----------------------------------------------------------------------------
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--------------------AA-AAAAAAGCTGAACAGGATA--ACAGAAATAAGCGCCGAGTACATCGCGCATGAGCCC
GGCCCGCTACGCTTTTTTTTTCACCCTTCCTCTATTAAAACCTAAAACCACCGGCCGCCAACGCCCCTTCCAATCACCGC
CGCCGCCGCCGCCGCCGCCGCCTCCTCCACCCGCTCCTCCGCCTGAACCCTAGCCATGGCGTGGCGCGGCGCTGCGTCCC
GCACCGTCCTCGCCGCGGTCCGCCGCCCGGCACCCTCCGCCGCGCTCGGCGGCCTCCGCGCCCCTCCTCCCTTCGCGGCC
CCGCGCCGCCGGATCCCTTCCCCCTTCGCCCCCTCCCACTCCACCTCCCCGCTCGGGGCCGCACGGTAAGTCAACCCGAT
GCCCAATTAGGCATTCGCACTGCGTTGAGATGGCGATCTGATGTCCTCATGATGTTGTTGTGCGCGCGCGCGCGCGTGTG
TGTGTGCAGGCCCCTGGCGGCCATGATGGGGTCGCCGCTGACGGCGGCGGTGGTGCTAGGGCGGATGACGGCGCACCCGT
CTGCCAGCGCCCGGGCCTGCTGCGAGCTCTCCCAGGGTACCCTCTTTTTCTGCCGTACTTGTCAGGATCGCTAATCTAAT
CGAAGTTAGTGTCGTGATCCCATTTTCAAGATTTTAATCTATCTAGATAGATGGTGAATTGTGTACTTTGTTACTAGTGT
CGACTTCTGCGCTAGTTTTTGTGA---GTTGCCTAGCAATATGTTGAAGGTGGTCATTTCTCTCGGGGTCATAGATCCAA
CTTGTTTTCTGTCTGGAAATGGATGGGTGTGTTTTCAGTGAGGCCAAGTTAATTGGTTCTGTAACTCTAGTAGGA-----
------TCAATACTTGAAACAGCATGAACAAAAACTG---CATTTTCTGTAGAATGGGCTAATATTGCAATGGTGAAAAT
CGAAGCAATATAAGGGGGTTATATGCAATGCATGCTTA-TTTTCTACTTCTG----TAAGTGACACCAAAATTGATG-TA
AGGAGATTAAAATTGGGATTTGATAGGAAATGGGGACGATGGTTGATGTTGGAGGCTGGCCAGCATGACGGGGACTTTAT
CTCCTAGAATGATGTAGGTCCCCTCCTCTTCCCAGTTCTGTATTTCTTTTGCGACTAGTAATTTAACAAACTGCAAGATA
GTAATTGCATTGAAAAAGTAAAAAAGCAAGAAC--------------ATAGGTAACTGTTGAGTGTTGGCTTTGTAGAAT
CGTATTACACTGTTGTGTCTCAAATGTTCAAAATGTCTTCTCCTTTTTAGCCCATTTATCTCTTCCCAGTTAGCCCTTTG
TTGCTATA-CCTTCTCTTCCTAATGCTAAGAGCACACATGCTTCACTGTTAGTAAGTTTTTACAAATTTGAATAGCTATA
TTGTGCACTTCAATATTGAAACTTCAATTGATTGAGGATATGTATGGTTGGGCTTTCTTAGGGAATGGAAAAGATGGGTG
ATGCGGGAGAGGCAAGGGTAGAGCATAGCTAAGGTGCTGATTTTGAACATGCACTCTTTTGGCGATGTTGTTTTTTAATC
ATCATCATTTGAATGGAAGCTTGATGAGGTTTCATGGTATGGGTAGTAAAACAATTAATG
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S-----------S
-------S----------SS--S---------------S------------S--S-------------------------
------------S----------------------------------S---------------------------S----
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-------------------------S-----------S--------------------S---------------------
---------------------------------------S----------------S---S-------------------
S--S----------------------------------------------------------------------------
------------------------------------------------------------S-------------------
---------------------------------------------------------------------S----------
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------S------------SS-SSS--------------------------------------------------S----
-------------------------S----------SS----S--------S------S---------------------
-------------------------------------------------------S------------------------
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----S---------------------S------SSSSSSSSSSSSSS---------------------------------
----------S------------------------------------------S--------------------------
-----------------------------------------------------------S--------------S-----
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---------------------------------------------------S-S-------------------S------
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>forward_698
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--------------------------------------AACAGACAAAATGCGCGTCC----------------------
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>reverse_1621
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--------------------TGGATGTTTCAGTGAGCCCA----------------------------------------
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