>input_sequence_80898
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--------------------------ATGTCGTCGTGCTGGTCGTCGGTGCTGGCCGTCCTCGGCGGCGCGGTGTCGGAA
GAGGAGGCGCAGATGCGGGGCAGGTTGCTGGCCGTCAAGGAGGCCGTGGCGTCGGAGGCGGAGACGGTCGAGAACCTAGA
GGAGGAGGTGAAGGCCCTGGAGCGTGCCCTGGCCGCGGCGGAGACGGAGAGGGAGGCGGCCGAGGCGAGGAGGCGGGAAG
CCGAGGAGCGCACGGGGAAGGCCGTGGCCGAGCTGCGGGCTGCGGAGGAGGAGCACGAGGGCCGCGTGGAGGAGCTGCTG
CTGACGGCGGAGCAGTCGGACGCCGCGGACGCGCGCATCCGCGAGCGGGAGGAGATGATCAAGATTATCACCGGCATCAC
CGAGACACCGAGCGATGAAAGGAAGCGGCCCTTGTTCTTTTAG-------------------------------------
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>chr3D_1_TraesCS3D01G263500
CAGTAATTGAAAGATGGAACCAACCATCCTATCGTATCCTTCAATGAGCCTTGAGTAGTCCACTTTACCGCCATCCGTAC
CGCCGCGCGCCTTCGAGCTATGACGGCTCTGGCCGCCGTCGTCGCGCCGCCGATCCCCAAGCCTGTCACGCCGGCCTTCG
GCATGTGAGCTCCTGCCACTCCGGCGAGACGGCGAGCGCGACCTCGACCTAGACCTGTGGTGCGACGACCTGCGGTCCCC
CCTCTCCCTTGACCTGGACCGGCGCCTCCGCTCCCTCGACCGGGACCTAGACCTTGACCGGCGCCGGCGCGAGCGAGACG
GAGACCTCGACCGCGGCCGAGGACGGGATGGGGACGGCGAGCGAGAACGACGACGCTGGCGGGACGGGGCCTCGGGAGGC
AGAGACGGCCTGGTGGGGGTGGGGGTAGCGCCGGCACGGACGAAGCCGGAGAGGAACGAGGAGGAGGAGGTGGTGCTGGG
CTTGGATGGGAAGGAGGCAGGTTGGGGATCGTCGGAGGAGAAGCCGAGACCCTGCTTGAAGCGGCGGGCGCCCTCGCCCT
TGCGGTTGAGCTCGTCGTAGTACGCCGCCGCCTTCTCTTCCTCCATCCCCGCTGGTCGGGACGCCGGCGAGTGGGCTGGG
TTTACTCTTTGTTCTTTTCT--TC--------------------------------------------------------
--CTAGGGAGATGCTTGGGCTGGGCTCAAAACCAAACGCGATACGGCTTGGGCCCATACAGAAGGCAGCAACAAAAACCA
CCCTTTTGCTTTTGGAAAGACTCAAAGCCCAGCTCGCGCTTCGCGGCCGCGGCCCGCTCCCGTCTCCGAGTCGAACAA-G
GCCAGGGAGAAGCAGAGGAGTTGGAGGATCGGGACACCGGCCGTGACCGGACCAGGGAT-AAATCAGGTAGCCACCTCCC
TTCGTAGTTCGTACACAGGACGTAAAATAACTTTTGT----TATCTTGCTGGTGGCATCTCCGGTGCAAGAGCGGATCGA
CACGAGAACACGCCCGTCGATCAGCCATGTCGTCGTGCTGGTCGTCGGTGCTGGCCGTCCTCGGCGGCGCGGTGTCGGAA
GAGGAGGCGCAGATGCGGGGCAGGTTGCTGGCCGTCAAGGAGGCCGTGGCGTCGGAGGCGGAGACGGTCGAGAACCTAGA
GGAGGAGGTGAAGGCCCTGGAGCGTGCCCTGGCCGCGGCGGAGACGGAGAGGGAGGCGGCCGAGGCGAGGAGGCGGGAAG
CCGAGGAGCGCACGGGGAAGGCCGTGGCCGAGCTGCGGGCTGCGGAGGAGGAGCACGAGGGCCGCGTGGAGGAGCTGCTG
CTGACGGCGGAGCAGTCGGACGCCGCGGACGCGCGCATCCGCGAGCGGGAGGAGATGATCAAGATTATCACCGGCATCAC
CGAGACACCGAGCGATGAAAGGAAGCGGCCCTTGTTCTTTTAGC------------------TTAATCAAGC-TTGCTAA
AGCAAGAGGAAGAGTTTAGGTACATGCTACGTACGGCTTCAGACATGGTATACTTTGAGGTGTTACTACATC-AAAATAC
TCCTGTAATTCAAGCAAAGTATTACCTCTGTTTCTAAGTATAAAACGTTTTAGCAGTTTAAATTGAACTGCCAAAACATC
TT-ATATTTACGAACAAAGGGTGGACTTGTGGCTCAATGTGATTATGTGAATCATCACCTAGAAACTCTCGCTTTTGGAA
TGGATTACTAT---------------------------------------------------------------------
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----------------------------TAAGGAGATAGCATTGCCACCGCAAAATGTTAAATTTATGTATCAAATATTA
TGTGTGTGAATTGTGCTATGGTTAGATTTGTAATTAGCGGAAGGTTAGGTGTTTGAGTCGAACATGTGTAACCCGAGGCT
AATATAAGAGCACTGCGGGTAACCAAAAGT-GACTAGGCATAAGTTGTAGACCAAGACAAATCACCAGAGG-ACGGTCCA
AGCGCCCATGGCAAGGGTGGCCAGACTGGCCATGGCGGGTTGTCGGAGCGCAGTCTGACGGCATCGGCAGGTTTATCCTC
GGCTGTACTATGTTGATTTAGTAGTACATGAGGAACATCCATAGTCATGCCCGGGATGGATCCACGTTAACAAATTTCAC
TCTCGTGCTTGTACTTGTGTTATTGCTTGTCCTCGATGGATCGACGTGCACCCTCGGATTATTCTAGCAAAAAAGGATAT
AGTATTGTATAGTTATTGTAAGAGAACAGTTCATTATGGT-AAAAAAA-AATAGGTTTCGGAGAATATATGGTTTTT--T
TGGAATTTCTGGAGGATATATGGTTAACCGATAAACCTCCTGTGTCAATTATTTCCAAAAATGTAAAGTTTCACTTGCAG
ACATCATGTTATTGTACCTAGAAATTTTAGGCAAAACTTTGGTCGTGTTCATTTCCAGAGTATCAATTTTTCTTTGCCAC
GCCTTCCAGGAATGTGTTTCCATGATGAAAGTTTGCAAGATCTTAGA
>chr3B_1
CAGTAATTGAAAGATGGAACCAACCATTCTATCGTATCCTTCAATGAGCCTTGAATAATCCACTTTACCGCCATCCGTAC
CGCCGCGCCCCTTCGAGCTATGACGGCTCTGGCCGCCGTCGTCGCGCCGCCGATCCCCATGCCTGTCACGCTGGCCCTCG
GCATGTGAGATCCTGCCACTCCGGCGAGACGGCGAGCGCGACCTCGACCTAGACCGGTGGTGCGACGCCCTGCGGTCACC
CCTCTCCCTCGACCTCGACCGGCGCCTCCGCTCCCTCGACCGGGACCTAGACCTTGACCGGCGCCGGCGCGAGCGAGAGG
GGGACCTCGACCGCGGCCGAGGACGGGATGGGGACGGCGAGCGAGAACGACGGCGCTGGCGGGACGGGGCCTCGGGAGGC
AGAGACGGCCTGGTGGGGGTGGGGCTGGCGCCGGCACGGACGAAGCCGGAGAGGAACGAGGAGGAGGAGGTGCTGCTGGG
CTTGGATGAGAAGGAGGCAGGTTGGGGGTCGTCGGAGGAGAAGCCGAGACCCTGCTTGAAGCGGCGGGCGCCCTCGCCCT
TGCGGTTGAGCTCGTCGTAGTACGCCGCCGCCTTCTCTTCCTCCATCCCGCTGGTC--GGACGCCGGCGAGAGGGCTGGG
TTTACTCTTTGTTCTTTTCTTCTC--------------------------------------------------------
--CTAGAGAGATGCTTGGGCTGGGCTCAAAACTAAAGGCGATAGGGCTTGGGCCCATACAGTGGGCTGGGTTTACTCTTT
GCTTTTC--------GAAGACTCAAAGCCCAGCTCGCGCTTCGCGGCCGCGGCCCGCTCTCGTCTCCGAGTCGAACAAAG
GTCAGGGAGAAGGAGAGGAGTAGGATCGGGAC-------------ACCGGACCAGGAAT-AAATCAGGTAGCCACCTCCC
TT--------GTACACAGGACGTAAATAAG-TTTTGT----TATCTTACTGGTGGCATCTCCGGTGCAAGAGCGGATCGA
CACGAGAACACGCCCGTCGATCAGCCATGTCGTCGTGCTGGTCGTCGGTGCTGGCCGTCCTCGGCGGCGCGGTGTCAGAA
GAGGAGGCGCAGATGCGGGGCAGGTTGCTGGCCGTCAAGGAGGCCGTGGCGTCGGAGGCGGAGGCGGTTGAGAACCTAGA
GGAGGAGGTGAAGGCCCTGGAGCGTGCCCTGGCCGCGGCGGAGACGGAGAGGGAGGCGGCCGAGGCGAGGAGGCGGGCAG
CCGAGGAGCGCACGGGGAAGGCCGTGGCCGAGCTGCGGGCTGCGGAGGAGGAGCACGAGGGCCGAGTGGAGGAGCTGCTG
CTGACGGCGGAGCAGTCGGACGCCGCGGACGCGC--ATCCGCGAGCGGGAGGAGATGATCAAGATTATCGCCGGCATCAT
CGAGACACCGAGCGATGAAAGGAAGCGGCCCTTGTTCTTTTAGTTAGCTTAACCATATTACGTTAATCAAGG-TTGCTAA
AGCAAGAGGAAGAGTTTAGGTACCTGCTACATACGGCTTCAGACATGGTATACTTTGAGGTGTTATTACATAAAAAATAC
TCCTGTAATTCAAGCAAAGTAATACCTCTGTTGCTAAATATAAAATGTTTTAGCAGTTTAAATTGAACTGTCAAAGCATC
TTAATATTTACGAACAAAGGGTGGACTTGTTGCTCAATGTGATTATGTGAATCATCACCTAGAAACTCTCGCTTTTG-AA
TGGATTACTAGAGGTTAAAGG-----------------------------------------------------------
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----------------------------------CATAGTATCACCACCGCAAAATGTTAAAATTATGTGTCAAATATTA
TGTATGTGAATTGTGCTATGGTTGGATTTGTAATTAGCGAAAGGTTAGTTGTTTGAGTCGAACATGTGTAACCCGAGACT
AATATAAGAGTACCGCGGGTAACC--AAGT-GACTAGGCATAAGTTGTAGACTAAGACAGATCACCAGAGG-ACGATCCA
AGCGCCCATGGCAAGGGTGGCCGCACTGGCCATGGCGGGTTGTCGGAGCATAGTCTAACGGCATCGACAGGTTTATCGCC
GATTGTACTATGTTGATTTAGTGGTACATGAGGAGCATTCATAGTCATGCCCGGGACGGATTCACGTTAACAAATTTCAC
TCTTGTGCTTGTACTTGTGTTATTGCTTGTCCTTGACGGATCGGCGTGCACCCTCGAACTATTCTAGCAAAAAAAAA---
AGTATTGTATAGCTATTGTAAGAGAATAGTTCATTATGGTAAAAGAAA-ACTAGGTTCCGGAGGATATATGTTTTTT--T
TGGAATTCCTGGAGGATATTTGGTTAACCGATAAACCTGCCATATCAATTATTTCCAAAAATGTAAAGTTTCACTCACAG
ACATCATGTTACTTTACCTAGAAATTTTAGGCAAAACTTTGATCGTGTTCATTTTCAGAGTGTCAATCTTT--TTGGCAC
GCCTTCCAGGAATGTGTTTTCATGATGAAAGTTTGCAAGCTCTTAGA
>chr3A_1
CAGTAATTGAAAGATGGAACCAACCATCCTATCGTATCCTTCAATGAGCCTTGAGTAGTCCACTTTACCGCCATCCGTAC
CGCCGCGCCCCTTCGAGCTATGACGGCTCTGGCCGCCGTCGTCGCGCCGCCGATCCCCATGCCTGTCACGCCGGCCTTCG
GCATGTGAGCTCCTGCCACTCCGGCGAAACGGCGAGCGCGACCTCGACCTAGGCCGGTGGTGCGACGCCCTGCGGTCCCC
CCTCTCCCTCGACCTCGACCGGCGCCTCCGCTCCCTCGACCGGGACCTAGACCTTGACCGGCGCCGGCGCGAGCGAGACG
GGGACCTCGACCGCGGCCGAGGACGGGATGGGGAGGGCGAGCGAGAGCGACGGCGCTGGCGGGGCGGGGCCTCGGGAGGC
AGAGACGGCCTGGTGGGGGTGGGGGTGGCGCCGGCGCGGACGAAGCCGGAGAGGAACGAGGAGGAGGAGGTGGTGGAGGG
CTTGGATGGGAAGGAGGCAGGTTGGGGATCGTCGGAGGAGAAGCCGAGACCCTGCTTGAAGCGGCGGGCGCCCTCGCCCT
TGCGGTTGAGCTCGTCGTAGTACGCCGCCGCCTTCTCTTCCTCCAT-CCCGCTGGTCGGGACGCCGGCGAGTGGGCTGGG
TTTACTCTTTGTTCTTTTCT--TCCTACTTTTTTTTTGAGATTTTCTTTTCTTCCTAGTTTTTTTTTCTTTTCTTCCTAG
TACTAGGGAGATGCTTGGGCTGGGCTCAAAACCAAACGCGATAGGGCTTGGGCCCATACAGTGGGCTGGGTTTACTCTTT
GCTTTTC--------AAAGACTCAAAGCCCAGCTCGCGCTTCGCGGCCGCGGCCCGCTCTCGTCTCCGAGTCGAAC----
--CAGGGAGAAGCAGAGGAGTAGGATCGGGAC-------------ACCGGACCAGGAATAAAATCGGGTAGCCACCTCCC
TT--------GTATGCACGACGTAAATAAG-TTTTGTTATATATCTCGTTGGTGCCGTCTGCGGTGCAAGAGCGGATCGA
CACGAGAACACGCCCGTCGATCAGCCATGTCGTCGTGCTGGTCGTCGGTGCTGGCCGTCCTCGGCGGCGCGGTGTCGGAA
GAGGAGGCGCAGATGCGGGGCAGGTTGCTGGCCGTCAAGGAGGCCGTGGCGTCGGAGGCGGAGGCGGTCGAGAACCTAGA
GGAGGAGGTGAAGGCCCTGGAGCGTGCCCTGGCCGCGGCGGAGACGGAGAGGGAGGCGGCCGAGGCGAGGAGGCGGGAAG
CCGAGGAGCGCACGGAAAAGGCCGTGGCCGAGCTGCGGGCCGCAGAGGAGGAGCACGAGGGCCGCGTGGAGGAGCTGCTG
CTGACGGCGGAGCAGTCGGACGAGGCGGACGCGCGCATCCGCGAGCGGGAGGAGATGATCAAGATTATCACCGGCATCAC
C---------AGCAATGAAAGGAAGCAGCGCTTGTTCTCTTAGC------------------TTAATCAAGCTTTGCTAA
AGCAAGAGGAAG----------------------------AGACATGGTATACTTTGAGGTGTTATTACATC-AAAATAC
TCCTGTAATTCAAACAAAGTATTACCACTGTTTGTAAGTATCAAACGTTTTAGGAGTTTAAATTGAACTGCCAAAACATC
TT-ATATTTACGAACAAAGGGTGGACTTGTTGCTCAATGTGATTATGTGAATCATCGTCTAGAAACTCTCGCTTTTGGAA
TGGATTATTAGAGGTTAAGACTACCCGCAGTGGAAGTAACATAGGTGATAACATCACACTTATCTAGGCAAAATAAATGA
TGTGGCATGTAATTAATGAAGAAAGAGAGGCATGCGGTAATATACTCCCTCCGTCCGGGTGTATAAGTCATTCGCGTAGT
TCTAGGTCATCGATTTGAGGAATTAAATATGTGTTATATGTCATGAAAAGTATATCACTAGATTTCCACGCGGATGTAGT
TTCTAAATATATATTTTTTGTCACATATAATACATATTTAGATAGTTAAATTATCGACCTAGAACTACGCGAATGACTTA
TACACCGGGACAGAGGTAGTAGCTAGTTACTGTAACATCACACATATTAAGAAAAGATGAGTCTATAACCTAATAAATGA
AGTGATGCATGACACAACACATATGTTACTACCCATTGTGGAGATAGTAACATAGAGTAGTAACATACGTATGTTACTAC
TCTAAGTTACTCCCCATTGTGACTAGTCTAAGGACATACTATTGCAACTGCAAAATGTTAAAATTTCGTGTCACACATTA
TGTGTGCAAACTGTGTTACGTTTGGATTTGTAATTAGCATAGGGTTAGGTGTTTGAATCAAACATGTGTCACCCAGGACT
AATATAAAAGCACCGCGGGTAGCC--AAATAGACTAGACATAAGTTGTAGACTAAGACAAATCATGAGAGGGACGATCTC
GACGCCCATGTCAAGGGTAGCCGGACTGGCCATGGCGGGTTGTCGGAGCGT----TGACGGCATC----GGCTTATCCTC
GGTTGTACTATGTTGATTTAGTA---CATGAGGAGCATCCATGTTCATGCCC----------------------------
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---------------------GAGAATAGTTCATTATGATAAAAAAAATACTAGGTTCCGGAGGGTATATGTTTTTTCTT
TTGAGTTCCCAAAGGATATATGGTTAACCGATAAACCTC-TGTGTCAATTATCTCCAAAAATAAAAAGTTTCCCC-GCAG
ACATCATGTTACTGTACCTAGAAATTTTAGGCAAAACTTTGATCGTGTTCATTTTCAGAGTATCGAATTTT--TTACCAC
GCCTTTCAGGAATGTATTTCCATGATGAAAGTTTGCAAGCTCTTAGA
>SNPs
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--------S--------------------------------------------------S--------------------
-------------------------------------------------------S-----------S------------
---------S-----S----------------------------------------------------------------
-S--------------------------------------------------S---------------------------
--------------------------S-----------------------------------------------------
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-------------------------------------------S-----------------SS---S-SSSSS-SSSSSS
S-S---SSSSSSSSS--------------------------------------------S--------------------
-S-------------------S---SSSSSSSSSSSSSSSSSSSS-----------S-----------------------
--SSSSSSSS----------------SS-SS-------------------------------------------------
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---------------------------------------------------------------S----------------
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-----------------------S------S----------------------------------S--------------
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------------------------------S-------------------------------------------------
----------S---------------------------------------------------------------------
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----------------------------------S----S----------------------S------S----------
-----------------------S---------------S-------------------------------------S--
-------------S----------SS--------------------------S----------------------S----
----------------------S---------------------------S---------------S-------------
--S-------------------------------S---------------------S----S------------------
---S-----------------------------S--S------S------------S-S---------------SS-SSS
------------S-------------S-----------------------S------S-----S-------S--------
-------S-------------------------------------------------------------------S----
-----------S-----------------------------S------------S----------------SS-------
---------------------------------------S-------
>forward_911
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-----------GCAGAGGAGTTGGAGGATCG-------------------------------------------------
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>reverse_2595
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----------------------------------ACATCCATAGTCATGCCCGG--------------------------
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