>input_sequence_80895
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------------------------------------------------------ATGGGCAACGCCGTGCCGCGCAACAT
GCGCCACGAGGCCACGCCGAAAGCCAGGGCGGCCGGGGCCTCGCGCTCCGGGGCGACGCCGGCCGTACCATCGAGACGTG
TGTTCTCGGCGGCACGCAGGCATGGCGGGAAGGTAGCGCAGGCCGCCGGGGGTCGACGCGGGGCCGAGGATCAGCAGGTG
GGAG---GCGGCGGCCACGGATCCACCGTGGTGATGACGGTGAAGGTGGTGGTGACGAGGAAGGAAGCGGAGAAGCTGAT
CGCGCGGCTGGAGGAGCAGAGCGCGAGGGAGCGCAAGGCTAGGATCGCCGAGCTCACGGGCCAGCTCAGGGCGGGGGACG
GCGGCGGCGGGAGGAGCACGGCAACGTGCGGGGCCGCGTGGGCGCCGAGGCTCGCCGTGATACAGGAGAGCTAG------
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>chr3B_1_TraesCS3B01G299900
GCCGGCGGTCATACTCCTCCGTCTCGCGACTGAGGAGCCTTGCCGGCGGCTGGAGGCCTTGGTTGGTCCACTTCCGGGCC
ACGCGCTTCCTCGCGCCGTTAGCGCGGACACACCGCTCATGCTCGGGGTCGTTGCCCCCCCCCCCCAGCTGCGGCGGAGC
ACCACATACCGCCCCACATGGCGACTAGAGGCGGAACGGGGCTCACCGGCGGCGAGAAATGCAAGGGAGGGAGTGGGGAA
TCAAGGGAAAACGCGGCAGCGGGGGATAGGGTTTCGACCCGTATTTGCCCCGCAAACATATAGTTATACGGCTTCGGGGG
TAAGGTTCGCGGGCCGCGGTAAAAGAGTTTACGGGTCGGACCAGTATACGGACTCTGTTATGGCCAGAAAATTAGGCCGG
GCCCGTATACTCGTCGAAATTATGCTGGTCCGCGCATTATACGGGGTCTGCTAGAGATGCTCTTATTCTATATATGGTGC
ATTCCGGAAACAAAAAAGAAATCCCCACTCGATGGCTGATCAACGGTCGAGAATGAACACGACGCCCACCTTGGTATCGC
TGGTGAAACGGGTCCTAGGAATCACGTCCTCAATGGATCAGCAACTTAGCTTATATGGCCGAAGTCGGTCAAGGAGA---
AACGTATTGGGTGTCACTACTGACACCCAAAGTCTCATGGAAACGAAACAAGAGGATCGTGTCAGTTCACGCCCGGAGGA
AGCTCCAGAAGGAGCCCGCTCGCGTGCTGCGTGCGTCCACCGCGGGAGCCCTTCCCCGGTCTACACGCTCCACTCTCC--
-GGTCAGTCCACCGCACGCGCACGTCATTTTTACGCCCTTTGAACGAGTCCTCCACTCCTCCTCCTTCACTAGCTCTTCG
CCACGCACGCGCTGCACGCTATAAATCGCCGCGCGCGCAAGGCACCGCGCATCCTATCACTCGGACAAACCACACCG---
GTCACTCCGCGCGCAGCAACG-----TACATACGCTCACGGAGCTACCGTACACATGGGCAACGCCGTGCCGCGCAACAT
GCGCCACGAGGCCACGCCGAAAGCCAGGGCGGCCGGGGCCTCGCGCTCCGGGGCGACGCCGGCCGTACCATCGAGACGTG
TGTTCTCGGCGGCACGCAGGCATGGCGGGAAGGTAGCGCAGGCCGCCGGGGGTCGACGCGGGGCCGAGGATCAGCAGGTG
GGAG---GCGGCGGCCACGGATCCACCGTGGTGATGACGGTGAAGGTGGTGGTGACGAGGAAGGAAGCGGAGAAGCTGAT
CGCGCGGCTGGAGGAGCAGAGCGCGAGGGAGCGCAAGGCTAGGATCGCCGAGCTCACGGGCCAGCTCAGGGCGGGGGACG
GCGGCGGCGGGAGGAGCACGGCAACGTGCGGGGCCGCGTGGGCGCCGAGGCTCGCCGTGATACAGGAGAGCTAGCTCCGC
GTATATGCATGTCGA----CCTAGTTCCGCGCAGGCGCAGTAGCCGCTGGTAGACGTGTCCGTGGTTTAAGAGTTTTA--
--GTACGTAGACAGTGCCTTAACCGCTGGTCACTCGTCACTCGGCCATGTACTTTGTTCAGGTGTTGCATAGCGTACGGT
G-----GCACGGCAAGTACTAGGAACTACTCCCTCCGTTTCAAAATAGATGATCCAACTTTATACTAATTATAATATAAA
ATTGGGTCATCTATTTTGAAACGGAGGAAAG--------------ATCAGGACAGTCTAATTTTCTTATTGGTATCGTTC
TGCATTCCTTGGCTGGTTCGTATGTTGGGGAGTACTGGCTGAAGGCTTCTTCCTATATTAGACTGATGTGTGATGACTGA
AAAAAA-TACGCCATAAGCTACGACCCTAGCCCC-------TTTCATGCAAGT---------------------------
----------------------------------------------------------AAACAAAACGGTACAAGTATGG
CAGACAAATCAAAACACAAACACCA-----TCAAGCCCATATCGCCCCGTTAGCTTGGCCCCAAAGCACACACCATTGCG
ATAAGAACGCCCATGCGTTCTTGG--------------------------------------------------------
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------------------------------------------------CCGTGCGGCGGCCGCCTTCGTAACAGGAAGAG
GGCAAGCAGGCGACCCGGTCA--------CCCAGCCACTGAATTAGTGCCACTCGAGCGGAAGGAAAGCAACACGACGAC
CCGAATGAGGCCAATTCTGCAGCGGCGATGTGGTCGTCGCGCCACTTACGGCATGTCCTT---------GGTCCAGAGGC
ATGGCGCG--CCGTGACGGCACGGCGCACGCGTCGCCGTCCGGTGCAGTGCACCACGATCTGTGGGATCGAGCGCCGCCC
GGCCCTCGCACGCGATCTTCTCGCATTTTTCTCCCTTCTCTTTAACCTCCACCAATCGGCGATGCAAGAGACTTTTACCT
CTGAA-TTTCCACCACACGTCTGAACTTGGTCATGTAGAATGATTGTGTTCTGGACTTTCGAGTGATCCAATGGCGGGAT
TCCGTGAATGCCAGGGGCTGAGGGGCCTTTGGCCACTTGATAA
>chr3A_606
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---------------------------------------------TTAGCTTGAATGGCCGAAGTCGGTCAATTTTTTCG
AAAGTATTGGGTGTCACTACTGACACCGAAAGTGTCATGCAAACGAAACAAGAGGATCGTGTCAGTTCACGCCCAGACGA
AGGTCCAGAAGGAGCCCGCTCGCGTACTGCGTGCGTCCACCGCGGGAGCCCTTCCCCGGTCTACACGCTCCACTCTCCTC
AAGTAAGTCCACCGCACGCGCACGTCATTTTTACGCCCTTTGAACGAGTC--------CTGCTCCTTCAGTGGCTCTCCG
CCACGCACGCGCTGCACGCTATAAATCGCCGCGCGCGCAAGGCACCGCGCATCCTATCACTCGAGCAAACCA-ACCG---
ATCACTCCGCGCTCAGCTACC-----TACATACGTTCACGGAGCTAGCGTACACATGGGCAACGCCGTGCCGCGCAGCAT
GCGCCACGAGGCCACGCCCAAAGCCAGGGCGGCCGTGGCCTCGCGCTCCGGGGCGAGGGCGGCCGTACCATCGGGACGCG
CGGGCACGACGGCGCGCAGGCATGGCGGGAAGGTGGCGCGGGCCGCCGAGGGTCGACGCGCGGTCAAGGAGAAGCATGGG
GGAGGCAGCGGCGGCAACGGGTCCGCCGTCGTGATGACGGTGAAGGTGGTGGTGACGAGGAAGGAAGCGGAGAAGCTGAT
CGCGCGGCTGGAGGAGCAGAGCGCGAGGGAGCGCAAGGCTAGGATCGCCGAGCTCACGGGCCAGCTCAGGTCGGGGGACG
GCGGCGGCGGGAGGAGCCCGGCAACGTGCGGGGCGGCGCGGAAGCCGAGGCTCGCCGTGATACAGGAGAGCTAGCTCCGC
GTATATGCATGTCGATCGACCTAGTCCCG------CGCAGTAGCCACTGGCAGACGTGTCCGTAGTTTACGAGTTTTAGT
ACGTACGTACACAGTGCCTTAACCGCTGGTCACTCGCCACTCGGCCATGTACTTTGTTCAGCTAGCGTGGTTGCAAGAGG
TGGCATGGCAATTGGACAG--------------------------------------------------TATAGTATAAG
GTTGGGTCATCTATTTTAAAACAGAGGAAATAGCGACTGGCTAAAATCAGGACAGTCTAATTTTCTTACTGGTATCGTTC
TGCATTCCTTAGCTCTTTCGTTACCAAAT------------------------------------ATGAGTGATGACTGA
AAAGAATTACGCCATAAGCTACGACCCCAGCCCC-------TCCATG---------------------------------
-----------------------------------------------------CAAGTAAACAAAACGGTACAAGTGTGT
CAGACAAATCAAAACACAAACACGATCAATTCAAGCCCATATCGCCCCGTTAGCTTGGCCCCAAATCTCGCACCATTGCG
ATAAGAACGCCCATGCATTCTTCG--------------------------------------------------------
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------------------------------------------------CCGTCCGGCGGCCGCGTTCTTAACAGGTAGAG
G-CACGTAGGCGACTCGGTCG--------CCCAGGCACTGAGCTATTGCCACTCGAGCGTAAGGAAAGCAACCCGACGAC
CCGAAAGCGGCCAATTTTGCAGCGGCGATGCGGTCGCCGCGCCACTCGCGGCATGTCCGTGCATCATTCGGTCCAGAGGC
ATGGCGCCCCCCGTGACGGCACGGCGCACGCGTCGCCGTCCGGTGCAGTGCACCAGGATCTGTGGAATGGAGCGCCGCCC
GGCCCTCGCACGCGATCTTCCCGCATTTTTCTCCCTTCTCTTTAACCTCCACCAATCGGCGATGCAAGCGACTTTTACCT
CTGAA-ATTCCACCACACGTTCGAATTTGGTCACGTAGAATGATTGTGTTTTGGACTTCCAAGTGATCCAATGGCGGGGT
TCCGTGAATGCCAGGGGCTAAGGGGCCTTTGGCCACTTGATAA
>chr3D_631
AAGGA---------------------------------------------------------------------------
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------------------------------------------------------------------------------CG
AATGTATTGGGTGTCACTATTGACACCCAAAGTCTCATGGAAAGGAAACAAGAGGATCGTATCAGTTCACGCCCAGAGGA
AGCTCCGGAAGGAGCCCGCTCGCGTGCTGCGTGCGTCCACCGCGGGGGCCCTTCCCCGGTCTACACGCTCCACTCTCC--
-AGTCAGTCCACCGCACGCGCACGTCATTTTTACGCCCTTTGAACGAGTC--------CTCCTCCTTCACTAGCTCTTCG
CCACGCACGCGCTGCACGCTATAAATCGCCGCGCGCGCAAGGCACCGCGCATCCTATCACTCGAGCAAACCA-ACCGGCG
GTCACTCCGCGCGCTGCTACGTACTGTACATACGTTCACGGAGCTAGCGTACACATGGGCAACGCCGTGCCGCGCAGCAT
GCGCCACGAGGCCACGCCCAAAGCCACGGCGGCCGGGGACTCGCGCTCCGGGGCGACGCCGGCCGTACCATCGGGACGTG
TGTTCTCGGCGGCACGCAGGCATGGCGGGAAGGTAGCGCGGGCCGCCGGGGGTCGACGCGGGGCCGAGGATCAGCAGGTG
GGAG---GCGGCGGCCACGGATCCACCGTGGTGATGACGGTGAAGGTGGTGGTGACGAGGAAGGAAGCGGAGAAGCTGAT
CGCGCGGCTGGAGGAGCAGAGCGCGAGGGAGCGCAAGGCGAGGATCGCCGAGCTCACGGGCCAGCTCAGGGCGGGGGACG
GCGGCGGCGGGAGGAGCCCGGCAACGTGCGGGGCGGTGCGGAAGCCGAGGCTCGCCGCGATACAGGAGAGCTAGCTCCGC
GTATATGCATGTCGA----CCTAGTCCTC------CGCAGTAGCCACTGGTGGATGTGTCCGTAGTTTACGAGTTTTA--
--GTACGTAGACAGTGCCTTAACCGCTGGTCACTCGCCACTCGCCCATGTACTTTGTTCAGGTAACGTAGTTGCAAGAGG
TGGCACGCATGGCAAGTACCAAATACTATGAGTGATGATTGAAA------------------------------------
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-------------------------AAAT------------------------------------ATGAATGATGACTGA
AAAA-A-TACTCCATAAGCTACGACCCCGGCCCC-------TTTCATGCAAGTTGTCGACGTATAATGTGCTGCCTAGTC
TTTTTCATCAAATGGGTCTTTTGGTTGCATTGGCTAGAGCATGCACTTCTACACAAGTAAACAAAAGGGTACAAGTATGA
CAGACAAATCAAAACACAAACACGATCAATTCAAGCCCATATCGCCCCGTTAGCTTCGCCCCAAAGCTCGCACCATCGCG
ATAAGAACGCCCATGCATTCTCGG--------------------------------------------------------
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------------------------------------------------CCGTGCGGCGGCCGCCTTTGTAACAGGAAGAG
GGCAAGCAGGCGACCCGGTC---------CCCAGCCACTGAGCTAGTGCCACCCGAGCGGAAGGAAAGCAACACGGCGAC
CCGAATGCGGCCAATTCTGCAGCGGCGATGTGGTCGCCGCGCCACTCGCGGCATGTCCGTGCATCGTTCGGTCCAGAGGC
ATGGCGCG--CCGTGACGGCACGGTGCACGCGTCACCGTCCGGTGCAGTGCACCACGATCTGTGGAATCGAGCGCCGCCC
GGCGGTCGCACGCGATCTTCCCGCATTTTTCTCCCTTCGCTTTAACCTCCACCAATCGGCGATGCAAGCGACTTTTACCT
CTGAAATTTCCACCACACGCCTGAACTTGGTCACGTAGAATGATTGTGTTCTGGACTTCCGAGTGATCCAATGGCGGGAT
TCCGTGAATGCCAGAGGTTGAGGGGCCTTTGGCCACTTGATAA
>chr3B_1782
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-----------------------------------------------------------------ATGAGTGATGAATGA
AAAAAA-TATGCCATAAGCTAAGACCCCAGGCCCCAGCCCCTTTCATGCAAGT---------------------------
-----------------------------------------------------------AACAAAAGGGTATAGGTATGG
CAGACAAATCAAAACACAAACACGATCAATTCAAGCCCATATTGCCGCGTTAGCTTCGCCCCAAAGCACGCACCATTGCG
ATAAGAACTCCCATGCATTCTTGGTTGTGCGGCGGGGAGCCCCTATTTGGCGCCTTCAGCACCGAATCTTCGATCTGGCG
CTCACTAGACTATCAACTGGGCTTTATTCGTGAAGCCCATTAGTTGTTTTCGTTGGCTGTTTTGATTCGTTGGCTGTTCA
GATTCGTTGAGAGAGAAACTGTTACGTACATATTCGTTTCCTTTCATTGCCTTGATTTTTTCGATTCGTTTCGAGAAAAT
CATGTTTTCATGGAAAAAAGCTCATTGGATTGGAAACATGAAAAACACCTTGTTTATCGACTTACTATCTTGATTGAATC
TTTTAGTGATTGTACTGTTTCGTTTCGTTAAACTTTGGCGACTGGACTATTTCGACGAAAAAATGTGTTTCAAATTTTCT
TTAAAATACCTCACGCTTATAAGTTATCTACTATAGCTGGGAAAAGACCTTAGAGTGAGACATATAATTAAAAACAAGAA
AACACAGCCACATAGTGTAGTTTTTCAATATTTTTTGATCTGTCTGAAAAGAAGGTTCAGTTACTTGATCACTGAAAAAA
TGTGGCCAGTTTCTTAAAATAAAAATTGTTCAAAGACTTTTAAAACAGGTCATGGAATTAAAAAAATCATCAATTTTTAA
AAAATAGTTCACAAAATGCAAACTAGTTCAGAAATTTTAGGAAAAAGTTCATTAAATTTGAAAAAGGTTCATCGAATTTG
AAAAAAGTTCATCGATTTTCAAAACAAGTTCATCCAAAATGGAAAAAGTTCATACATTTTTTAAAAGAAGACATCGAATT
TGAAAAAAGTTCATCGACTGTTAAAAAGGTTCATCAAATTTGGAACAAGTTCATTGATTTTAGAAAAGGTTCATCGATTT
TGGAAAAATAAAATCATCGAATCTTAAAAAAGTTCATCAAAATTAAAAATAAGCTCTTTGAATTTGAAATAAGTTAATTG
ATTTTGAAAAAAATTCATCGATTTTGAAAATAATTTCATTGAATTTGAAAAAACTTCATCAATTTTTAATAAAGTTCATC
AAATTTGAAGAAAGTTCAATGAATTTGAAAAAAGTTCATTGAATTTGAATATAAGTTCACTGAATTTGAAAAAACTTCAT
CAAATTTGAATATAAGTTTATTGAATTTGAAAAGGTGTTCTTTGAATTTGAAAAAAAGTTTATCGAATTTCAAAAAACTT
CATTGAATTTGAAAAAAGTTCAATGAATTTGAAAATGGTTCATCGAATTTGAAAAAAGTTTCTTTGAATTTTAAAAAATG
TCATCGAATTTTAAAATGGTTCATCGAATTTGAAAAAAGGTTCACCAAAGTTGAAAAAACGTTCATCGAATTTGTCAAAA
AACTCCATCAAATTTGCGAAAAAGTTCATCGAATCCGAGAAAAAAGTTTGTCTATTTTGAAGAAAAAATTCATGAAGAAA
ACAAGTTTCATGACTTTGGAAAAGAAAGAAAAAAGGGAATAAAAAGGAAAAGAAGAAGAAGATAAGACAAGAAACATGTA
TGTACTCAAACCGAGTGAATTGGTCGAGTAGTTGTCTCGCCATACTCAAAACTCGATGGTCGTCGGTTCTAAACCTAGCT
CTCGCACACTTTTTAGAGTTTGGAAAAGAGAAAGAAAGTCAAAACTAGGCTGACCCAACATGACAAGAGGGTATGTGCCC
GTCAGCAGGAATGCGTGTAACGGGCGCTTAAGGCACTGAATAGGACCACCGTGCGATGGCCGCCTTCATAACAGGAAGAG
A-CAAGTAGGCGACCCGGTCACCCAGCCACCCAGCCACTGAACTAGTGCCACTTGAGAGGAAGGAAAGCAACACGACGAC
CAGAATGCCACCAATTTT-CAGCGAAGATGTGGTCGTCGTGCCACCTATGGCATTTCATT---------GGTCTAGAGGC
ATGGTGCG--CCGTGATGGCACGGCGCACGCGTCACTGTTCGGTGGAATGCACCATAATCTATGGAATCGAGCACCACCC
GGCCCTCGCACGCGATCTTCTCACATTTTTCTCCCTTCTCTTTAACCTCCACCAATCGGCGATGCAAGCCACTATGACCT
CTGAA-TTTCCACCACATGTTTGATTCTGGTTGAGAAGAATGATTGTGCTCTGGACTT----------------------
-------------------------------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS------------------SSSSS---
--S-----------------------------------------------------------------------S-----
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-S------------------------------------------------SSSSSSSS----------------------
---------------------------------------------------------------SS-------S-------
-----------------S----------------S-----------S-----------------------------S---
------------------S------------------------------------------------------S------
---------------------------------------S----------------------------------------
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-----------------S----------------S---S--SS-------------------------------------
-------------------------S---SSSSSS----------S-----------------S-----S----------
------------------------------------S--------------------------SSS-S-SSSSSS-SS-S
S--------S---------S-SSS----SSSSSSSS-S--S---SSSSSSSSSSSSSSSSSSSSSSSSS----S-----S
S----------------S----S-------S-------------------------------------S-----------
----------S---SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------
---------------------------S----------------------------------------------------
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-----------------------S---------------------------------------------S----------
----------------S---------------------------------------------------------------
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------------------------------------------S-------------------------------------
-------S------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------S-----------
---------------------------------S------------------------S---------------------
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>forward_452
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--------------------------------CGCATTATACGGGGTCTGCT----------------------------
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>reverse_1601
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GGCACGGCAAGTACTAGGAA------------------------------------------------------------
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