>input_sequence_80887
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------------------------------------------------ATGAGGGGGCTCAAGGTGCCAAGCCTACTATG
CTTGCTACTGCTCATACCG---CTCTTGCTTCCTGGTAAGCGTTGTATGGAAATTTCATCCACA---AAGATAGTCACTT
CCTCAATGCATGATGTA-------GCTAGTCATATGTGAAATTC-GTACTCCTTGCCTCATCTTTTTGTCTTATTTCTCT
ATAGAACACCATAGCCTCCATTTTTTCTTTTTCTCACACCACTT--TGTGTTCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAGTCGGTTCAGCAGGACCTATATTGTTAAGCCTCCCGAATGCAACCATGATCCATGTGCCAAGGCCTGCCAAAAG
GAGGGATTTACCGAAGGGGTCTGTGAAATCATTCGTGCCACACCTATTTTTATGCGTTGTCTCTGCAAGAAAGAGTGCTA
A-------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr2A_1_TraesCS2A01G579000
CCGGCTATTTTGTGGGCAAATTAATTTCATGTGTATTGCTAGAAAATATCCAGTCAAACTGATATAAATGACCTTAAGCA
ATAACGATATGTAAGATGCACATAGAAGAGAGTAACATGAGCGACTCCATTTGTCAAGCTGGCCCGAAGGCTAAAATTGA
ATTAACTTGGAGTGGTTGTGTATGTGGCCAATTAGAGGTCATGAATATTCGGGAACATGTATTTGGTTGATGTTGCATGC
AAATCAAAGCCATAGCTACAATAAATAACAAGGACTGTCATGATTGATGTTAGTAGGAATTGCTACATACTTCCTTCTTC
CGGATTTATTAGGCCGACTCCTATTTTGGGCCCAACTTTAACCATAAATTGAATTACTGAGTTAATTAAACATGAACTAT
GTCACAAAAATTATACAATGTGAAACCTCTTTTGAATACAAATCAAACGGTATACTTTTTGTAACATATACCTCATTTAT
TAATTATATATAGATGGTCAAAGTTTAACTCAAAATATGAGAGGACATAATAAACCTGGGC-GAAGAAGTAGGAACTATA
CATAGTTCCCCTTGTGCAATGAATAAAACCAAAGGATGGTCT---AAAAAAAATCATGTATCTTAGGAAATCCATACGAA
CATGTGATGAAGCAGCTTTAATTGGCAGAAATTAATTTTCTGCATTATTATATTGCATAAATGAAGTTGTCCATATCTTC
TTTTATCACAAATTTCAATATATAAAAAACA-TGGAGCAAAGAATTGCATCATGTAGATAGAGTCGCATCCATGAGATAG
ATTGTCAGCATTATTGCATCATGCATATCTTCGAGATGGGATCATGCAAAC---ATATCTTCAACATTTATTTTTCTTTA
GGTCACATCATCAGTGCCTCCTTTTCTAAAAGCATCATCAGTGCCTACAAAAGATCATGCAGCCTAGTTGGATGCGCATC
TATTCTATACCCGCTTACTTGGCTTCGATACTAGTTATGACTAAAGAGATGAGGGGGCTCAAGGTGCCAAGCCTACTATG
CTTGCTACTGCTCATACCG---CTCTTGCTTCCTGGTAAGCGTTGTATGGAAATTTCATCCACA---AAGATAGTCACTT
CCTCAATGCATGATGTA-------GCTAGTCATATGTGAAATTC-GTACTCCTTGCCTCATCTTTTTGTCTTATTTCTCT
ATAGAACACCATAGCCTCCATTTTTTCTTTTTCTCACACCACTT--TGTGTTCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAGTCGGTTCAGCAGGACCTATATTGTTAAGCCTCCCGAATGCAACCATGATCCATGTGCCAAGGCCTGCCAAAAG
GAGGGATTTACCGAAGGGGTCTGTGAAATCATTCGTGCCACACCTATTTTTATGCGTTGTCTCTGCAAGAAAGAGTGCTA
AATGAAAAACATGCTTGTAGCTACTTCAGGAT----------GTATGATGCAAAAAGCAATAAGTTAATAACATGTGTAG
T---------ATGATGATAAGAAATGGAAGAAGTTGAGACTCTAGAAAATG---TTCCTTATTACTAACAGATCTCCACT
AATCATACTTGATGGAGTG--GAGTGGATT-AGAGGAGACCCCAAAATATCAAGG-AA-AAAAATAA---TGGAACCCAG
AAACAACTGATGAAGCAAATTATGTTTGGTCATTAGAGTCCTAACTCATGCGTGTTTGTTTCGGGGCAGTTTGTATTAGG
GAATGGGAATTAGGGGGGGTGTAGGACTTAAATTTTCTTGTTTCACTGGAGAGCTGGGGAATTAATCAATAGTGTCACGA
TAGATTAACACAACGACCATTAGAGATGGCATGTAAAAAACAAAAGG-AAAAAAACTTTGTAGGAATTTGCAGGAGCAAG
CTCTGTCTAACATTATGTAGTACATAATTTGTAAGAACACATAAAGAGCGCTAAGTACTGGTTACCAAATAATGGATAAA
GCGAACATAAACAAGTTGGTAAAATACAAAACAAATTTTGCATATTGCGTAATCTATTAATTTGAAGCTAATACAACACT
TTAACAGTAATAAGGAGGCTGACTTAAGAAAATGAGGGCTAAGTGAGGGAGTCCTGGATTAGGGGGTCCTCGGACAGCCG
GACTATATACTTTAGCCGGACTATTGGACTATGAAGATACAAGATTGAAGACTTCGTCCCGTGTCCGGATGGGACTCTCC
TTGGCGTGGAAGGCAAGCTTGGCAATACGGATATGTAGATCTCCTCCCTTGTAACCGACTCTGTGTAACCCTAGCCCCCT
CCGGTGTCTATATAAACCAGAGGGTTTAGTCCGTAGGACAAGAACAACAATCATACCATAGGCTAGCTTTTAGGGTTTAG
CCTCTACGATCTTGTGGTAGATCAACTCTTGTAATACTCATATCATCAAGATCAATCAAGCAGGAAGTAGGG
>chr2A_1
CCGACTATTTTGTGGGCAAATTAATTTCATGTGTATTGCTAGAAAATATTCAGTCAAATTGATATAAATGACCTTAAGCA
ATAACGATATGTAAGATGCACGTAGAAGAGAGTAACATGAGCGACTCCATTTGTCAAGCTGGCCCGAAGGCTAAAATTGA
ATTAAATTGGAGTGGTTGTGTATGTGGCCAATTAGAGGTCATGAATATTCGGGAACATGTATTTGGTTGATGTTGCATGC
AAATCAAAGCCATAGCTACAATAAATAACAAGGACTGTCATGATTGATGTTAGTAGGAATTGCTACATACT---------
-------ATTAGGCCGACTCCTATTTTGGGCCCGACTTTAACCATAATTTGAATTACTGAGTTAATTAAACATGAAATAT
GTCACAAAAATTATACAATGTGAAACCTCTTTTGAATACAAATCAAATGGTATACTTTTTGTAACATATACCTCATATAT
TAATTATATGTAGATGGTCAAAGTTTAACTCAAAATATGAGAGGACCTAATAAACCTGGGCAGAGGAAGTAGGAACTATA
CATAGTTCCCCTTGTGCAATGAATAAAACCAAAGGATGGT------AAAAAAATCATGCATCTTAGGAAATCCATACGAA
CATGTGATGAAGCAGCTTTAATTGGCATAAATTAATTGTCTACACTATT-------------------------------
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------------------------------------------------------------------------
>chr2A_1
CCGACTATTTTGTGGGAAAATTAATTTCATGTGTATTGCTAGAAAATATCCAGTCAAATTGATATAAATGACCTTAAGCA
ATAACAATATGTAAGATGCACGTAGAAGAGAGTAACATGAGCGACTCCATTTGTCAAGCTGGCCCGAAGGCTAAAATTGA
ATTAACTTGGAGTGGTTGTGTATGTGGCCAATTAGAGGTCATGAATATTTGGGAACATGTATTTGGTTGATGTTGCATGC
AAATCAAAGCCATAGCTACAATAAATAACAAGGACTGTCATGATTGATGT-AGTAGGAATTGCTACATACTTCCTCCTTC
CGGATTTATTAGGCCGACTCCTATTTTGGGCCCGACTTTAACCATAAATTGAATTACTGAGTTAATTAAACATGAACTAT
GTCACAAAAATTATACAATGTGAAACCTCTTTTGAATACAAATCAAACGGTATACTTTTTGTAACATATACCACATTTAT
TAATTATATGTAGATGGTCAAAGTTTAACTCAAAATATGAGAGGAC----------------------------------
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------------------------------------------------------------------------
>chr2D_1
CCGGCTATTTTATGGAAAAATTAATTTCATGTGTATTGCTAGAAAATATCCAATCAAATTGATATAAATGACCTTAAGCA
ATAACGATATGTAAGATGCACGTAGAAGAGAGTAACATGATCGACTCTATTTGTCAAGCTGGCCTGAAGGCTAAAATTGA
ATTAACTTGGAGTGGTTGTGTATGTGGCCAATTAGAGGTCATGAATATTA-GGAACATGTATTTGGTTGATGTTGCATGC
AAATCAAAGCCATAGCTACAATAAATAACAAGGACTGTCATGATTGATGTTAGTAGGAATTGCTGCATACTTCCTCCTTC
CGGATTTATTAGGCCGACTCCTATTTTGGGCCAGACTTTGACCATAAATTGAATTAA-GAGTTAATTAAACATGAACTAT
GTCACAAAAATTATACAATGTGAAACCTCTTTTGAATACAAATCAAACGGTATACTTTTTGTAACATATACCTCATTTAT
TAATTATATATAGATGGTCAAAGTTTAACTCAAAATATGAGAGGACCTAATAAACCTGGGCGGAGGAAGTAGGAACTATA
CATAGTTCCCCTTGTGCAATGAATAAAAACCAAATGGATGGTTGAAAAAAAAATCATGCATCTTAGGAAATCCAAACGAA
CATGTGATGAAGCAGCTTTAATTGGCAGAAATTAATTGTCTGCAGTATTATCTTTCATAAATGAAGTTGTTCATATCTTC
TTTTATCACAAATTTCAATGTATACAAAAACGTGGAGCAAAGAATTGCATCATGTAGATAGAGTCGCATCCATGAGATAG
ATTGTCAGCATTATTGCATCATGCATATCTTCAAGATGGGATCATGCAAAC---ATATCTTTGACATTTATTTTTCTTTA
GT--ACATCATCAGTGCCTCCTTTTCTAAAAGCATTATCGGTGCCTACAAAAGATCGTGCAGCCTAGTTGGATGCACATC
TATTCTATACCCGCTTACTTGGCATCGATACTATTTATGACTAAAGAGATGAGGGGCCTCAAGGTGCCAAGCCTACTATT
CTTGCTACTGCTCATGCCG---CTCTTGTTTCCTGGTAAGCATTGTATGGAAATTTCATCCACA---AAGATAGTCACTT
CCTCAATGCATGATGTA-------GCTACTCATATGTGAAATTC-GTACTCCTTGCCTCATCTCTTTGTCTTCTTTCTCT
ATAGAACACCATAGCCTTCATTTTTTCTTTTTCTCACACCACTT--TGTGTTCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAATCGGTTCAGCAGGACCTATATTGTTAAGCCTCCCGAATGCAAGCATGATCCATGTGTAAAGGCCTGCCAAAAG
GAGGGATTTACCGAAGGGGTGTGTGAAATCATCCGTGCCACACCTATTTTTATGCGTTGTCTCTGCAAGAAAGAGTGCTA
AATGAAAAACATGCTTGCAGCTAGTTCAGGAT----------GTATGATGCAAAAAGCAATAAGTTAATAACATTTGTAG
T---------ATGATGATGAGCAATGGAAGAAGTTGAGACTCTATTAAATAT--TTCCTTATTACTAACAGATCTTCACT
AATCAAACTTGATGGAGTG--GAGTGGATT-AGAGGAGACCCCAAAATATCAAGGAAA-AAAAATAA---TGGAACCCAG
AAACAACTGATGAAGCAAATTATGTTTGGTCATTAGAGTCCTAACTCATGCGTGTTTGTTTCGGGGCAATTTGTATTAGG
GAATGGGAATTAGGGGGTGTGTAGGACTTAAATTCCCTTGTTTGATTGGAGGGCTGGGAAATTAATCAATAGTGTCATGG
TAGATTAACACAATGACCATTAGAGATGGCATGTAAAAA-CAGAAGGAAAAAAAACTTTGTAGGAATTTGCAGGAGCAAG
CTCTGTCTAACATTATGTAGTACATAATTTGCAGGAACACATAAAGAGCGCTCAGTATTGGTTACCAAATAATGGATAAA
GCGAACATAAACAAGTTGGTAAAATACAAAACAAATTTTGTATATTGTGTAATCTATTAATTTGAAGCTAATACAACACT
TTAACAGTAATAAGGAGGCTGACTTAAGAAAATGAGGGCTAAGT------------------------------------
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>chr2B_796
ATTTCAA-------------------------------------------------------------------------
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--------CATTACTCCGTCATGCATATCTTCAAGATAGGATCATGCGAACGTTATATCTTTCACATTTATTTT-CTTTA
GGTCA---------------------------CATCATCAGTGCCTACAAGAGATCGTGTAGCCTAGTTGGATGCGCGTC
TATCCTATACTCGCTTACTTGCCGTCGTTACTGGTTATGCCTAAAGAGATGGGAGACCTCAAGGTGCCAAGCGTGCTATG
CTTGCTACTGCTCATGCCACTCCTCTTGGTTCCTGGTAAGCGTTGTCTGAAAATTTCACCTTTAGACGAGCAAGGCACTT
CTTCCATGCGTGATGTACACATTTGCTAGTCATATGTGAAGTTTTGTATTCCACGCCACTTCTTTCTGTCTTGTTTTTCT
GTAGAACATCATAGGTCTCC-TTTTTCTTTTTGATACACCATATTGTGTGTTCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAGCAAGTTCAGCAAGACCTATACCGGCAAGGCTTCCTGGTGCAAGTATGCTCCATGTGCCAAGGCTTGCCAAAAG
GAGGGTTTTACCGAAGGGGTGTGTGCCATGATCCGCGCCAGACCCCTTTTTATGCGTTGTCTCTGCAAGAAAGAGTGCTA
AATGAG-AGCATGCTTGCAAGTTGCAACTGCCGTTGGATGTAGTATGATGTAACAAGCAATAAGTTAATAACACTCTGTA
GTATGAAGAAATGATAATGAGGAATGAAATAAGTTGAGACTCTAGCAAATACTATTCCTTATTACTAACAGATCTGCACT
AATCAAACTGGATGGAGTG--GAGTGGATTTACAGGAGATCTGAAAATATCAAGGGGA-AGAAAAATAATTGGAATCTTG
GAACAACTGATGAAGTAAATTAGGCTTGGTAACCAGAGTC----------------------------------------
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>chr2D_905
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--------------------------------CATCATCAGTGCCTACAAGAGATCGTGGAGCCTAGTTGGATGCGCATC
CATCGTATAGTCGCTTACTTGCCGTCGTTACTGGTTATGCCTAAAGAGATGGGAGACCTCAAGGTGCCAAGCCTGCTATG
CTTGCTGCTGCTCATGCCACTCCTCTTGGTTCCTGGTAAGCGTTGTCTGAAAATTTCACTTTTAGACGAGCAAGGCACTT
CATGCATGCATGATGTACACATTTGCTAGTCACATGTGAAGTTT-GTATTCCAAGCCACTTCTTTCTGTCTTGTTTCTCT
ATAGAACATCATAGGTTTTC-CTGTTCTTTTTGATACACCATATTGTGTGTTCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAGCAAGTTCAGCAAGACCTATACCGGCAGGGCTTCCTTATGCAAGTATGCTCCATGTGCCAAGGCCTGCCAGAAG
GAGGGCTTTACCGAAGGGGTGTGTGCCGTGATCCGCGCCAGACCCCTTTTTATGCGTTGTCTCTGCAAGAAAAAGTGCTA
AATGAG-AACATGCTTGCAAGTGATGCAGGAT----------GTATGATGTAACAGACAATAAGTTAATAACACTCTGTA
GTATGAAGAAATGATGATGAGGAATGAAATACGTTGAGACTCTAGCAAA---TATTCCTTATTACTAACAGATCTGCACT
AATCAAATTGGAATATTGGACGAGTGGATT-ACAGGAGATCCGAAAGTATCAAGGGACGAAAAATAA---TGGAATCTTG
GAACAACTGATGAAGTAAATTAGGCTTGGT--------------------------------------------------
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>chr2B_905
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--------------------------------CATCATCATTGCCTACAAGAGATCGTGTACCCTAGTTGGATGTGCATA
TATCCTATACTCGCTTACTCGCCGTCGTTACTGGTTATGCCTAAAGAGATGGGAGACCTCAAGGTGCCAAGCGTGCTATG
CTTGCTACTGCTCATGCCACTCCTCTTGGTTCCTGGTAAGCGTTGTCTGAAAATTTCACCTTTAGACGAGCAAGGCACTT
CTTCCATGCATGATGTACACATTTGCTAGTCACATGTGAAGTTT-GTATTCCAAGCCACTTTTTTCTGTCTTGTTTCTCT
ATAGAACATCATAGTTTC----TTTTCTTTTTGATACACCATATTGTGTATCCGTTGTTTTGTAGGCTCTGAAGCCGACA
CATGCAGCAGGTTCAGCAAGACCTATACCGGTAAGGCTTCCTTATGCAAGCATGCTCCATGTGCCAAGGCCTGCCAGAAG
GAGGGCTTTACTGAAGGGGTGTGTGCCATGATCCACGCCAGACCCCTTTTTATGCGTTGTCTCTGCAAGAAAGAGTGCTA
AATTGG-AACATGCTTGCAACTGATGTAGGAT----------GTATGATGTGACAAGCAATAAGTTAATAACACTCTGTA
GTATGA--------------------------------------------------------------------------
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>chr2B_934
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-------------------------------------------------------------GCCTAGTTGGATGCGCGTC
TATCCTATACTCGCTTACTTGCCGTCGTTACTGGTTATGCCTAAAGAGATGGGAGACCTCAAGGTGCCAAGCGTGCTATG
CTTGCTACTGCTCATGCCACTCCTCTTGGTTCCTGGTAAGCGTTGTCC-AAAATTTCACCTATA---GAGCAAGACACTT
CTTCCATGCAT----------------------ATGTGAAGTTT-TTATTCCAAGCCACCTTTTTCTGTCTTGTTTCTCT
ATAGAACATCATAGGTTTTC-TTTTTCTTTTCGACACACCATATTGTGTGTTCATTGTTTTGTAGGCTCTGAAGTCCATT
CATGCAGCAAGTTCAGCAAGACCTATACTGGCAAGGCTTCCTTGTGCAAGTATGCTCCATGTGCCAAGGCCTGCCAAAAG
GAGGGCTTTGCCGAAGGGGTGTGTGCCATGATCCGCGCCAGACCCCTTTTCATGCGTTGTCTCTGCAAGAAAAAGTGCTA
AATAAG-AACATGCTTGCAACTGATGTAGGAT----------GTATGATTTAACCACAAATAAATTAATAACACTCTGTA
GTATGA--------------------------------------------------------------------------
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>chr2B_1281
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------------------------ATACTGTTAAGCTTTCCGAATGCAAGCATGATCCATGTGTCGAGGCCTGCCAAAAG
GAGGGATTTACCGAAGGGGTGTGTGAAATCATCCTTGCCACACCTGTTTTTATGCATTGTCTCTGCAAGAAAGAGTGCTA
ATTGAAAAACATGCTTGCAGCTACTTCAGGAT----------GTATGATGCAAAAAGCAATAAGTTAATAACATTTGTAG
T---------ATGATGATGAGCAATGGAAGAAGTTGAGACTCTAGAAAA---TATTCCTTATTACTAACAGATCTCCACT
AATCAAACTTGATGGAGTG--GAGTGGATT-AGAGGAGACCCCAAAATATCAAGG-AA-AAAAATAA---TGGAACCCAG
AAACAACTGATGCAGCAAATTATGTTTGGTCATTAGAGTCCTAACGCATGCATGTTTGTTTCGAGGCAATTTGTATTAGG
AAATGGGAATTAGGGGGTGTGTAGGACTTAAATTCCCTTGTTTGATTGGAGGACTGGGGATTTAATCTATAGTGTCACGG
TAGATTAACACAACGTCCATTAGAGATGGTATGTAAAAAACAGAAGGAAAAAAAACTTTGTAGGAATTTGCAGGACCAAG
CTCTGTCCAACATTATGTAGTACATAATTTGCAGGAACACATGATGAGCGCTTAGTATTGGTTACCAAATAATGGATAAA
GCGAACATAAACAAGTTGGTAAAATACAAAACAAATTTTGTATATTGTGTAATCTATATGTTTGAAGCTAATACAACATT
TTAACAGTAATAAGGAGGCTGACTTAAGAAAATGAGGGCTAAGT------------------------------------
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>SNPs
----------------------------------------------------------S---------------------
---------------------S----------------------------------------------------------
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---------------------------------------------------------------------------S----
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S-----------------S---------------
----------------------------------------S-----------------S---------------------
-------------------------------------S------S------S--S---------------S---------
-------------------S----S----SS-------------------------------------------------
--------------------------------S----------------------------SS-----------------
--------------------------------------------------------S-----------------------
-----------------------S--------------------------------S-----------------------
---------------S------------S---------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------S-----------S-----------------------------------------------
-----------------S--------------------------------------------------------S-----
------------------S--S----------------------------S-----------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-----------------S----------------SS-------S-S-----S---------------------------S
------------------------------------------S-------------------------------------
-------------------------------S-S------------------S----S----------------------
----------------------------------------S------S--------------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_354
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--------------CGACTCCTATTTTGGGCCCA----------------------------------------------
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>reverse_2233
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------------------------------------------------------------------------GACTCTCC
TTGGCGTGGAAG--------------------------------------------------------------------
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------------------------------------------------------------------------
