>input_sequence_80882
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-----------------ATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCCGCGGGGGACGGCAGCGGCGGCGACGGCGCCGGGGC
GAGGATGATCTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCT
GGGCCGCCACGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTC
GACTTCCTCGTCGACGTCGTCAAGCCCAGGCTAGGTGACGATGGCGTCGATGCCGCGGACGGCGAAGGCCGGGTCGCGCC
GGGCGCCGGTGTCCACGGGGGCGCGCTCGACTAG----------------------------------------------
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>chr1B_1_TraesCS1B01G366800
TTTTGCTTAGAAAAAGTTCTGGAAACTAGAACTATCGAAAAATGATAAACAAG----GAGAAAGTCAACCTTATGTGCTG
TGATGTGGTGTGTGTTGCCGATTTTGTGCCCGTAGAGCCAACATCCAAAGAATGGGCATGGTGTACATAGTCCCCTAAAA
TTCCTACCTTTACTCAAATTTCCTCATTTAATTGATGTATATTGGTCTATATACGTGAATTACACATGGTATTTAAGATG
TTTGCCAAAAAAATGGATGTACACTCAGTGGCGGAGACAAGGGGACTAAAACAGTGTATTTTAATGGACTAGCCCTCCCA
GCGAGGTTTAGCAAGGTTTGGCCCTCCCCATTAGATTTTCCTGGCTCCGCTACTGTGTACACTTGTACCCAAATCCCAGT
GTAACTCAGGCCATGGCGCCAACTGGCACATGTAACGTGTTTGTTTGCCCATATATTTGGTCAATGTTGCACATATATAA
TGTATTTGTTTGTATACCTTGTACTGCGAATAACAGAATATGCCAT---ACAAAACACTAT-ACCAGAATATATACACTA
CCAGCTAAAACTACGCTTTACACC-GGCGCTTACGTAGTACGACAAGGACGCCTTCCAAATTAC----------------
--------------------------ACAGGTGCACTCACGCAACGCAAGCACAAGGCTGCAAGCAACAAACCTCCAACG
AAAGCTACA--CC--TCATTTCTCTACTCGCATTCGTACACCATCTCGATCTCAACCACCGTCTCCCACGTCTTCCATGG
ATTTGTTTACGCGATCTCTA------------------------CGATCGCTGTCGAAGCTGCCGGCCCCGGCCACCTC-
--CGGTTGCGGGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGT--TCGCGGGTCAAACG
GCATGCGTATATAAGATC----CCGTCCATGGCCGCGGTCGATTGGAGGTTGCAC----CGTTCATTTGTT------AGA
GCTTAGC--TAGCTAGCAGCAGCCTTGCACGGCGGCGAGAGGATTAGAC------------------CGGCGGCGAT---
----------CGAGCGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCCGCGGGGGACGGCAGCGGCGGCGACGGCGCCGGGGC
GAGGATGATCTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCT
GGGCCGCCACGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTC
GACTTCCTCGTCGACGTCGTCAAGCCCAGGCTAGGTGACGATGGCGTCGATGCCGCGGACGGCGAAGGCCGGGTCGCGCC
GGGCGCCGGTGTCCACGGGGGCGCGCTCGACTAGAAACTTGTC-----AATGCATGCATCCGGATCCATGCATGCACGGT
CGTTGTGGTTAATATGGAATCAAACTGTACGGCGATTAATTGCACTAATTTCGTTCATGTTGTTTTTACTTGCTACTGCT
GCCGCCAATTCAAA-CCGAATGACTCGCCGGTGCAACTAGCACGATTTAATTACCTTGTACACACAAGCATTCGAGCAGT
ATATGTCTACCTTTGTCAGTCTACATCAGGGACTTTGGATTGACGGTTTTTTAAAGGAAATTTTGAAGATTTCAGTGCTA
TAAAATTGCTCCCTCTGTAAACTAAGACCTTTTAAATCACTATTAGTGATTATATTAGTTTACAGAGGGAGTAATAGATA
AGTTTTTAGCGAGGATGTTTGATGTTTCCACACTTTGATCACAAGCGAATGGAAAGGTTCGTAAAGCTTTATATGTAACC
AAACGTCCTTTTGCTGACAATTCATGAAATGTCCAACCCCCTTATAAACGAAAACTAATAATTTAATCAGGCAATTCAAA
CAGGCCGTGAGATGACCAAATAATAGAATGAGTGCACCCATTTCCTAAAATTCAGTAAAAACATATTTGTAAACTTTGAA
TAATTCTAGAAAAAAAAACACGCAATATATACTGAGTTGAAACTTACCCATGCAAATTTTCTTACAATAATATGACAACT
TTGAGAACATGGGAATGCTACAATTAAGTTCTAAGACTTATAGCATTCTCATTTCCACCCAGCCCAGAAATGGTCATATT
ATTTCTTCAAAAATTATATGCATAAGTTTCTAACCAATACATGCCTGTCTTTATTCATATTTTTTCAGAACTTACAAAGA
ATCTAACTTAACTAGGCCCTTCGTCTCGCATCCCTTCATCTCGCAACCACGTGAACAAGCGACTAGGGTTTCATCTGCCG
CTCGTCAGTGCCGGAGCCGATCTGCCTCATCTCCCGTGGCTTTAGGGTCATGGACATGTGGTGGATCCCAGCCCTTGCGG
>chr1D_1
TTTTGTTTAGAAAATGTTATGGAAACTAGAACCATCCAGAAATGATAAAAAAAAGAAGAGAAAGTCAACCTTATGTGCCG
TGGTGTGG--------GCCGATTTTGTGCACGTAGAGCCAACATCCAAAGAATGGG-----TGTACAATGTCGCCTAAAA
TCCCTTCCTTTACTCAAATTTCCTCATTTAATTGATGTATATTGGTCTATATACGTGAACTATACATGGTATTTAAGATG
TTTGCCAAAATAATGGGTGTACACTTGTAC--------------------------------------------------
------------------------------------------------------------------ACCCAAATCCCAGT
GTAACTCCGCCCATGGCGCCAACTGGC--------CGTGTTTGTTTGCCCATAT--TTGGTCAATGTTGCATATATATAT
TGTATTTGTTTGTATACCTTGTACTGCCAATAACAGAATATGCCATCATACAAAATACTACGACCAGAATATA-ACACTA
CCAGCCAAAACTACGCTTTACACCAGGCGCTTACGTACCACGAAAAGGACGCCTTCCAAATATCGCCTGCGGCACCGTGG
ATACGGAGACTCTCGGTGTCCGAGTGACAGGTGCGCTCACGCAACGGAAGCACAAGGCTGCAAGCAACAAACCTCCAACG
AAAGCTACA--CC--TCATTTCTCTACTCGCATTCGTACACCGTCGCGATCTCAACCACCGTCTCCAC----------GG
ATTTGTTTACGCGATCTCTA------------------------CGATCGCTGTCGAAACTGCCGGCCCCGGCCACCTC-
--CGTC-GCGGGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGTTCTCGCGGGTCAAACG
GCATGCGTATATAAGATC----CTGTCCATGGCCGCGGTCGATTGGAGGTTGCAC----CGTTCGTTTGTT------AGA
GCTCATAGCTATAGATAGTT--CCTTGCACGGCGGCGAGAGGATTAGCTAGGACC-------------------------
------GCGGCGAGAGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCG
CACGCACTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGGGGGACGGCAGCGGCGGCGACGGCGCCGGGGC
CAGGATGATCTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAAGCCGCCT
GGGCCGCCACGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTC
GACTTCCTCGTCGACGTCGTCAAGCCCAGGCCAGGTGACGATAGCGTCGGTGA---------CGGAGTCGGCCTCGCGCC
GGCCGCCGGTGCCCACGGCGGCGCGCTCGACTAGAAACTTGTCGGTGCAATGCATGC------ATGCATGCGTGCGCGCT
CGTCGTGGCTTG--TGGAATCAAACTGTGCCGCCATTAATTGCACTAATTCCGTTCATGTTGCTTTTACCTGCT-CTGCT
GCTGCCAATACAAAGCCGAATGACGCAGCGGTGCAACTAGCACGATTTGATTAACTTGTACACAC---------------
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>chr1A_616
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--------------------------ACAGGTGCGCTCACGCAGCGCAAGCACAAGGCTGCAAGCAAC-AGCGTCCAACG
AGAGCTACGCCCC--TCATTTATCTACCCGCGTTCGTACACCATCGCGATCCCAACCACCGTCTCCCA----------TG
ATTTGTTTACGCGAATCTCTACATGCGCGAAAGATCAATCATACCGGTCTCTGTCGAAACTGCCGGCCCCGGCCACCTC-
--CGGTTGCGGGCC------GGCCATGGACAGCAGCCGCCACGACCACGCGCTCCCTTCCTTGT--TCGCGGGTCAAACG
GCGTGCGTATATAAGATC----CCGTCCATGGCCGCGCTCGATTGGAGGTTGCAC----CGTTCGTTTGTTTGCTATAGA
ACTCATAGCTATAGATAGCT--CCTTGCACGGCGGCGAGAAGATTAGGTAGCTAGCTAGCACCGGGTCGGCGGCGAT---
----------CTAGAGGATGAGGATTTCGAGGCCGTACTCGGGGGTGTCCAGAAGCGGGGCGACGGCGAGGACGGGGCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGGGGGACGGCAGCGGGGGCTACGGCGCCGGGGC
CAGGATGATCTCGGGCGAGGCGCCCGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCAGGCCGCCT
GGGCCGCCACGCTCGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCGACCTCTTC
GACTTCCTCGTCGACGTCGTCAAGCCCAGGCCAGGTGACGACGGCGTCGGCGA---------CGGAGTCGGCCTCGCGCC
GGCCGCCGGTGTCCACGGCGGCGCGCTCGACTAGAAACTTGTCGGTGCAATGCATGC------ATGCATGCATGCGCGCT
CGTCGTGGCTTG--TGGAATCAAACTGTGCCGCGATTAATTGCACTAATTCCGTTCATGTTGATTTTACCTGCT-CTACT
GCTGCCAATACAAG-CAGAATGACGCAGCGGTGCAACTAGCACGATTTGATTAACTTGTAC-------------------
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>chr1B_649
GCAACG--------------------------------------------------------------------------
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----------------------------------------------------------------CAAG-AACCTCGAAAG
AAAGCTACGTACATTTCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CG
GTTTGTTTACGTGATCTCTGTACC----ATCGAT----------CGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCG
CTCGGTTGCCGGCCGGCCATGGCCATGGGCAGCGGCCGCCACGGACACGCGCTCCCTTGTTCGCG-----GGGTCAAGCG
GCATGGGCATATGATATAAGGTCCGTCCATGGCCGCGCTCGAATGAGAATTGCACCGCACGTCCGTTTGTT------AGA
GCTTAGC--TACCCAGCAGC-----------------------------------CTAGCACGCACGGCGAGGCGACTGA
ACGA---CGGCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGTCGACTGCGAGGACGGGGCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCCGCGCGGGACGGCAGTGGCGGCGACGGCGCCGGGGC
CAGGATGATCTCGTGCGAGGCGCCGGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCT
GGGACGCCACGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCATCAGGGACACCAACGTCTTC
GACTTCCTCGTCGACGTCGTCAAGGCCGGGCCGAGTGACGATGGTGTCAATGCTGGGGACGGTGAAGGCAGCGTCGGGCC
GGCCGTAGGTGTCCAGGGCGGC----------------------------------------------------------
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>chr1D_649
GCAACG--------------------------------------------------------------------------
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----------------------------------------------------------------CAAG-AACCTCGAAAG
AAAGCTACGTACATTTCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CG
GTTTGTTTACGTGATCTATGTA----CGATCGAT----------CGATCGCTGTCGAGACTGCCGGCCCCGGCCACGCCG
CTCGGTTGCCGGCCGGGCATGG-----------AGCCGCGACGGCCACGCGCTCCCTTGTTCGCG-----GGGTCAAGCG
GCATGGGCAT-----ATAAGGTCCGCCCATGGCCGCGGTCGAATGAGAATTGCAC----CGTCCGTTTGTT------AGA
GCTTAGC--TACCCAGCAGC-----------------------------------CTAGCGCGTACGGCGAGGCGACTGA
ACGACGGCGGCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGTCGACGGCGAGGACGGGGCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACAGCGCCGGGGC
GAGGATGATCTCGTGCGAGGCGCTGGTGGTGTTCTCCAGTGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCT
GGGACTCCACGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTC
GACTTCCTCGTCGACGTCGTCAAGGCCAGGCCGAGTGACGATGGCGTCAGTGCTGGGGACGGCGAAGGCAGCGTCGCGCC
CGCCGTAGGTGTCCACGGCGGC----------------------------------------------------------
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>chr1A_681
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---------------TCATTTATCTACTCCCATTCGTACACCATCGCGATCTCAACCACCGTCTCCTG----------CG
GTTTGTTTACGCGATCTCTGTACGATCGATCGAT----------CGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCG
CTGGGTTGCCGGCCGGCTATGG-----------AGCCGCGACGGTCACGCGCTCCTTTGTTCGCG-----GGGTCAGGCG
GCATGGGCAT-----ATAAGGTCCGTCCATGGCCGCGGTCGAATGAAGATTGCAC----CGTCCGTTTGTT------AGA
GCTTAGCGCTACCCAGCAGCCTAGC----------------------------AGCTAGCACGTACGGCGAGGCGACTGA
ACGACGGCGGCCAGAGGATGAGGCTGCCGAGCCCGTACACGGGGGTGTTCAGGGGCGGGTCGACGGCGAGGACGGGGCCG
CACGCTCTGCCTCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACGGCGCCGGGGC
GAGGATGATCTCGTGCGAGGCGCCGGTGTTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCT
GGGACGCCACGCTTGAGGGCCGGCGCCGGACCGTGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTC
GACTTCCTCGTCGACGTCGTCAAGGCCAGGCCGAGTGACGATGGCGTCAATGCTGGGGACGGTGAAGGCGGCGTCGCGCC
GGCCGTAGGTGTCCACGGCGGC----------------------------------------------------------
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>chr1D_766
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--------------------------------------------CGATCGCTGTCGAGACTGCCGGCCGCGGCCACGCCG
CTCGGTTGCCGGCCGGCCATGG-----------AGCCGCGACGGCCACGCGCTCCCTTGTTCGCG-----GGGTCAAGCG
GCATGGGGAT-----ATAAGGTCCGTCAATGGCCGCGGTCGAATGAGAATTGCAC----CGTCCATTTGTT------AGA
GCTTAGC--TACCCAGCAGC-----------------------------------CTAGCACGTACGGCGAGGCGACTGA
ACGACGGCGGCGAGAGGATGAGGCTGCCGAGCCCGTACTCGGGGGTGTTCAGGGGCGGGGCGACGGCGAGGACGGGCCCG
CACGCGCTGCCGCTGGCGCGGATCAAGAAGATCATGAAGCGGTCGGCGCGGGACGGCAGCGGCGGCGACGGCGCCGGGGC
GAGGATGATCTCGTGCGAGGCGCCGGTGGTGTTCTCCAGGGCGTGCGAGCTGTTCGTCGCCGAGCTGACGCGCGCCGCCT
GGGACGCCACGCTTGAGGGCCGGCGCCGGACCATGCACGCCGAGGACGTCGCCGCCGCCGTCAGGGACACCAACGTCTTT
GACTTCCTCGTCGACGTCGTCAAGGCCGGGCCGAGTGACGATGGCGTCAAAGCTGGGGACGGTGAAGGCAGCGTCACGCC
GGCCATTGGTGTCCACGGCGGC----------------------------------------------------------
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>SNPs
-----S--------S---S-------------S---S-S----------S--S-------------------------S-
--S-----SSSSSSSS-------------S--------------------------SSSSS------SS---S-------
-S---S-----------------------------------------------------S--S-----------------
----------S-----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
-------S-S-----------------SSSSSSSS-------------------SS---------------S-------S
---------------------------S---------------------------S----S------------S------
-----S-------------------------------SS----S-----------------SS-----------------
----------------------------------S---------------------------------------------
---------------------------------------------S----------------------SSSSSSSSSS--
----------------------------------------------------------S---------------------
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-----------S-S------SS-------------------------SS-------------------------------
--------------S-----------------------------------------------------------------
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-------------------------------S---------------------S-S-------------S-S--------
--S---------------S--------------------------------------SSSSSS--S---------S--S-
---S----S-SSSS--------------S-S-------------------S-----------S------S----S-----
--S------S--------------S-SS--------------------S----S-----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_334
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--------------------------------------------------------------------------CTCCCA
GCGAGGTTTAGCAA------------------------------------------------------------------
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>reverse_2435
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----------------------------------TTCATCTCGCAACCACGTGA--------------------------
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