>input_sequence_80868
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------------------------------------------------------ATGCAGATGGAAGCTACAGATGCAAC
TCACCCCAAGGAGAAGAAGGACAAGGTAATCATCTGAAACTTGCATCAAATAAATGAAATGTCTCAACAACCACATCAAT
GCAACGTGCATGTCATAAAAATGCAGAAAAGTCTGATGAACACGTACGTTCTTATTCATTAAGGAACACGCCAGAGAGGC
CAAACCGGCGAAGGAAAAGAAGGACAAGAAGGAGAAGAAAGAAAAGAGCA---------AGGAGGGCAAGGAAAAGAAAG
AGAAGGTCGGAGAGGTAACTGACACGGCCAAGCTGAGGGCAAAGCTAGAGAAGATCGATGTGAAAATCGACGACCTGAAG
GCGAAGAAGCAGGAGATTGTGGCTCGACTCCTCGAGCTCGAGGGTAAGGCAGCAGAGGCTGCAGCACCAGCGAGCGGCTG
A-------------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G325200
TATGCAAAATGGCACTCGCTGGTAGGCTGGTGTGGTAATTATTTATTTTTTCTTTTTTACCTTTTTTTAGATGAAGGTGA
TGATTTTTTTAAAGATGTTTTTTAGACGGATGCGAGGACTTTATGTATTTTTTTAAAAATAGAAACGTGCGCACAGTTTC
CTCTCAAGCGGCGTCACATGGTGGCGCCCCAATCACTAGTAAGTTACCATTTGACCACCACGCCCCTTGAACGACCTCGA
GCGGGTATTGTACCATCCATGCTTGGCAATGTAATGTTGTGTTTAACAAAAAAACAGCCATCATGTCTTTCAAGGGGTGA
TACCCACTATTTTATCTTGCATCTTGAAGTTTCTGCAATGTGG-CCCCAATCAAACCCATTGCACGAACAATGTTTTGAC
CTTTCCATTGCAAAGATTGTGACAACTTATTAGTCTTGCCTAATAGTTTGATCTTAAGATGCAAGTGCAAAAAGAC--CA
AAACTTTTGATCAGAGGAATCATGCCACCTATTGTTATTCTTTGTGTTAAATTGTCGACATCATCATGAATGTTCTTTAA
TACTTGCAAAATAGATTTCCGTATCATAATAAACCCGAAATAAAGTAAATTGATGGATGCAACAACGCGTGCATTACTAT
TTTTAGTTGGATGATGAAACACATGTGGGTTTGCTCCCTTTGTCGAGACTTTTCCTCTTATCCAGACACACACCGTGCCC
AAATTAATCCAAACAGAACTAATTATAGAACTAAATTGCTGCAACCAACACAACTATAAAACTGGATTGATCGAAGCAAA
CATTTAATTTACGGTTCACAGGTGTCGAAGCTTATTTACACTTATATAGGGATCAATCTGAAACAACCAGAATTTATCTC
TGTTTTCACCAGAATCATTGTTATCTTGACAAAGGCAAGTTAGCTTCCTTTGCCGCTACCCCTGAATTTATTGATTATGA
ATCGAATCCATGTCCGAATGCTAATC-----------CGCCCTGCTGCCCCAAAATGCAGATGGAAGCTACAGATGCAAC
TCACCCCAAGGAGAAGAAGGACAAGGTAATCATCTGAAACTTGCATCAAATAAATGAAATGTCTCAACAACCACATCAAT
GCAACGTGCATGTCATAAAAATGCAGAAAAGTCTGATGAACACGTACGTTCTTATTCATTAAGGAACACGCCAGAGAGGC
CAAACCGGCGAAGGAAAAGAAGGACAAGAAGGAGAAGAAAGAAAAGAGCA---------AGGAGGGCAAGGAAAAGAAAG
AGAAGGTCGGAGAGGTAACTGACACGGCCAAGCTGAGGGCAAAGCTAGAGAAGATCGATGTGAAAATCGACGACCTGAAG
GCGAAGAAGCAGGAGATTGTGGCTCGACTCCTCGAGCTCGAGGGTAAGGCAGCAGAGGCTGCAGCACCAGCGAGCGGCTG
AGGTTTCGATGGGTTGTTGC-TTGAGAAGAATGAAACAGCTTTCAGGCAATGCATGCAGCTAGTGAGTGACATATCCACA
AGTTGGTGCAGGAATTGTTCGTTCGACTGGCATATATTATTGTGCTTTAATCTTCCTGGAGCTACATATTTGCATCCAGC
ATTGCATGATCATCTAGAT-TTTGGTGCACACAAAGTTGTCCACCTTGTATCAAATCCGTGGTAAACTGTGGCATGAATG
TACCTCTTAAAGATTTTTGGTATTGGACACGACCTTTCTTGAAATGTGGAGTATCGAAGTCTGCATTTGTTTTTACATCA
AGTGGGGAGCAGGGTGCGAACCTCTGCTGCCATTCAGCATAGAGCATAACAAGCT---------------------GCGG
CTCACATGACAATACAATGAACTGTGGTTCACA-----ATACGATGAACACACACAAAATCCAAATACCAAATAACATGT
CATTAAGTAGTAAGAACGAGAAACTGGGGGCCTATTCGGCTAAATTTCAGTGGGAGGAGCTTCGGAACAATCTCCAAAAT
TCCAAGGTTTCAAAGAGTTAAATGACAAAACTAGTAGCAACA--------------------------------------
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--------------------------------------------TAGAAATTATAGTATAATAACCATATAGTAACATAT
AACACTCTCAATTCACAAATAGTTGCGAACACAGTGATAGCACAACTGATATTTTTTACAGATACGAGTTGCACAACCCA
AGCAAGTACTGATATTAACATCCATCTAGGCACAACCTCACCTCACCTCACACATAGTATAAGAATAAGCTGTATGTACT
TAAAAGTATGCATATAAAAGTGGCATCCATTTTCCAACACTCCTCAAACCATCCTGCCCTGGAGCTGACCATCTCGTATC
TGCGAAGCGATGTCTTTGACAGCGCCAGGCCCGTGAGGGATGAACACTGCTGAAGACTTGGAAGAGGCCCCAATGTCCTT
CATGGTATCGAAGTACTGGGTCACCAAAACCATATCCATGACATCCTTCGAAGAGGTCCCAGGCACATTCT
>chr4D_200
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---------------------------------------TAAGTTACCATTTGACCACCACGCCCCTTGAACGACCTCGA
GCGGGTATTGTACCATCCATGTTTGGCAATGTAATGTTGTGTTTTAACAAAAAAAAGCCATCATGTCTTTCAAGGGGTGA
TACCAACTATTTTATCTTGCATCTTGAAGTTTCTGCAATGTGG-CC-CAATCAAACCCATTGCACGAACAATGTTTTGAT
CTTTCCATTGCAAACATTGTCACAACTCATTAGTCTTGCCTAATAGTTTCATCTTAAGATGCAAGTGCAAAAAGAC--CA
AAACTTATGATCAGAGGAATCATGCCACCTATTGTTATTCTTTGTGTTAAATTGTCTACATCATCATGAATGTTCTCTAA
TACTTGCAAAATAGATTTCCGTGTCATAATAAACCCGAAATAAAGTAAAT-GATGGATGCAACAACGCGTGCAGTGCTAT
TTTTAGTTGGATGATGAAACACATGTGGGTTTGCTCCCTTTGTCGAGACTTTTCCTCTTATCCAGACACACACCGTGCCC
AAATTAATCCAAACAGAACTAATTATAGAACTAAATTGCTGCAACCAACACAACTATAAAACTGGATTGATCGAAGCAAA
CATTTAATTTACGGTTCACAAGTGTCGAAGCTTATTTACACTTATATAGGGATCAATCTGAAACAACCAGAAGTTATCTC
TGTTTTCACCAGAATCATTGTTATCTTGACAAAGGCAAGTTAGCTTCCTTTGCCTCTACCCCTGAATTTATTGATTATGA
ATCGAATCCATGTCTGACGGCTAATCTTGTGGCATCGCGCCCTGCTGCCCCAAAATGCAGATGGAAGCTGCAGATGCAAC
TCACCCCAAGGAGAAGAAGGACAAGGTAATCATCTGGAACTTGCATCAAATAAATGAAATATCTCAACAACCACATCAAT
GCAACATGCATGTCATAAAAATGCAGAAAAGTCTGATGAACACATACGTTCTTATTCATTAAGGAACACGCCAAAGAGGC
CAAACCGGCGAAGGAAAAGAAGGACAAGAAGGAGAAGAAAGAAAAGAGCA---------AGGAG---------AAGAAAG
AGAAGGTCGGAGAGGTAACTGACACGGCCAAGCTGAGGGCAAAGCTAGAGAAGATCGATGTGAAAATCGATGACCTGAAG
GCGAAGAAGCAGGAGATTGTGGCTCGACTCCTCGAGCTCGAGGGTAAGGCAGCAGAGGCTGCAGCACCAGCGAGCGGCTG
AGGTTTCGACAGGTTGTTGCCTTGAGAAGAATGAAACAGCTTTCAGGCAATGCATGCAGCTAGTGACATCTTATT-----
-------------ATTGTTCTTTCGATTGGC--ATATTATTGTGCTTTAATCTTCCTGGAGCTACATATTTGCATCCAGC
ATTGCATGATCATCTAGAT-TT-GGTGCACACAAG--TGTCCACCTTGTATCGAATCCGTGGTAAACTGTGGCATGAATG
TACCTCTTAAAGATCTTTGGTATTGAT-----------------------GTATCGAAGTTTGCATTTGTTTTTTCATTA
AGTGAGGAGCAGAGTGTGAAACTCTGCTGGCCAT--------------------T---------------------GCTG
CTCACATGACAATACAATGAACTGCGCTTCACATGACAATACGATGAACGCACACAAAATCTAAATACCAAAGAACATAT
CA-TAAGTAGTAAGAACGAGAAACTGGGGGCCT--------------CAGTGGGAGGAGCTTCAGAACAATCTCCAAAAT
TCCAAGGTTTCCAAGATTTGAATGAAAATACTAGTAGCAACA--------------------------------------
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--------------------------------------------TAGAAATTATAGTATAATAACCATATA---------
-ACACACTCAATTCACAAATAGTGGTGAACGCAGTGATAGCACAACTTATATTTTTTACAGAAACGAGTGGCACAATCCA
AGCAAGTACTGATATTAACATCCATCTAGGCACAACC-----TCACCTCACACATAGTATAAGAATAAGCTGTATGTACT
TAAAAGTATGCGTATAAAAGTGGCATCCATTTTCCAACACTCCTCAAACCATCCTGCCCTGGAGCTGACCATCTCGTATC
TGCGAAGCGATGTCTTTGACAGCGCCAGGCCCGTGAGGGATGAACACTGCTGAAGACTTGGAAGAGGCCCCAATGTCCTT
CATGGTATCGAAGTACTGCGTCACCAAAACCATATCCATGACATCCTTCGAAGAGGTCCCAGGCACATTCT
>chr5A_242
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-CGGGTATTGTACCATCCATGTTTGGCAATGTAATGTTGTGG-TTAACAAAAAAAGCCATTCATGTCTTTCATGGGGTGA
TACCAACTTTTTTATCTTGCATCTTGAAGTTTCTGCAATGTGGCCC-CAATCAAACCCATTGCACGAACAATGTTTTGAT
CTTTCCATTGCAAACATTGTGACAACTCATTAGTCTTGCCTAATAGTTTGATCTTAAGATGCAAGTGCAAAAAGAAATCA
AAACTTTTGATCAGAGGAATCATGCCACCTATTGTTATTCTTTGTGTTAAATTGTCTACATCATCATGAATGTTCTCTAA
TCCTTACAAAATAGATTTCCATGTCATAATAAACCCGAAATAAAGTAAAT-GATGGATGCAACAATGCGTGCAGTACTAT
TTTTAGTTGGATGATGAAACACATGTGGGTTTGCTCCCTTTGTCGAGACTTTTCCTCTTATCCAAACACACACCGTGCCC
AAATTAATCCAAACAGAACTAATTATAGAACTAAATAGCTGCAACCAACACAACTATAAAACTGGATTGGTCGAAGCAAA
CATTTAATTTACGGTTCACAAGTGTCGAAGCTTATTTACACTTATATAGGGATCAATCTGAAACGACCAGAATTTATCTC
TGTTTTCACCAGAATCATTGTTATCTTGACAAAGGCAAGTTAGCTTCCTTTGCATCTACCCCTGAATTTATTGATTATGA
ATCGAATCCATGTCTGAAGGCTAATCTTGTGGCATCGCACCCTGCTGCCCCAAAATGCAGATGGAAGCTGCAGATGCAAC
TCACCCCAAGGAGAAGAAGGACAAGGTAACCATCTGGAACTTGCATCAAATAAATGAAATATCTCAACAACCACATCAAT
GCAACATGCATGTCATAAAAATGCAGAAAAGTCTGATGAACACATACGTTCTTATTACTTAAGGAACACGCGAAAGAGGC
CAAACCGGCAAAGGAAAAGAAGGACAAGAAGGAGAAGAAAGAAAAGAGCAAGGAGGGCAAGGAG---------AAGAAAG
AGAAGGTCGGAGAGGCAACTGACACGGTCAAGCTGAGGGCAAAGCTAGAGAAGATCGATGTGAAAATCGAAGACCTGAAG
GCGAAGAAGCAGGAGATTGTGGCTCGACTCCTCGAGCTGGAGGGTAAGGCAGCAGAGGCTGCAGCACCAGCAAGCGGCTG
AGATTTCGATGGGTTGTTGCCTTGAGAAGAATGAAACAGCTTTTAGGCAATGCATGCAGCTAGTGAGTGACATATCCACA
AGTTGGTGCAGGAATTTTTCTTTTGACTGGC--ATATTATTGTGCTTTAATCTTCCTGGAGCTACATATTTGCATCCAGC
ATTGCATGATAATCTAGATTTT-GGTGCACACAAG--TGTCCATCTTGTATCAAATTCGTGGGAAACTGTGACATGAATG
TACCTCTTAAAGATTTTTGGTATTGGACTTGACCTTTCTTGAAATCTGGAGTATCCAAGTCTGCATTTGTTTTTACATTA
AGTGGGGAGCAGGGTGTGAACCTGTGCTGGCCAT--------------------TCAGCATAGAGCATAACACACTGCGG
CTCACATGACAATACAATGAAC---------------------------GCACACAAAATCTAAATATCAAATAACATAT
CATTAAGTAGTAAGAACGAGAAACTGGGAGCCTATTCGGCTAAATTTCAATAGGAAGAGCTTCAGAACAATCTCCAAAAT
TCCAAGGTTTGAAAGAGTCGAATGAAAAAACTAGTAGCAACATACTCCCTCCGTCCCATAATATAATACTTCCTCCATTC
CACAATGTAGTGCTTCCTCTATTCCCGTGCTTCAACTTTGACCGTAAATTTAACTATCAAAACCGATTGCGGCGGGAGCA
AAAATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTTAATTATATAATTTTTTCTACCGCCGCAGTTGGTCTCATTGA
TTAAATTTATGGTTAAAGTTGGACCTTGGGAAGCGCGGGCGCACTATATTTTGAAATGGAGGGAGTAACGTTTTTGACAC
TAGTGTAGTGTGAAAAACGTTCTTATATTTTGGGACAGAGGGAGTAGAAATTATAGTATAATAACCATATAGTAACATAT
AACACTCTCAATACACAAATAGCTGCGAACACAGTGATAGCACAACTGATATTTTTTACAGAAACGGGTGGCACAACCAA
AGCAAGTACTGATATTAACATCCATCTAGGCACAACC-----TCACCTCACACATAGTATAAGAATAAGCTGTATGTACT
TAAA-GTATGCATATAAAAGTGGTATCCATTTTCCAACACTCCTCAAACCATCCTGCCCTGGAGCTGACCATCTCGTATC
TGCGAAGCGATGTCTTTGACAGCGCCAGGTCCGTGAGGGATGAACACTGCTGAAGACTTTGAAGAGGCCCCAATGTCCTT
CATCGTATCAAAATACTGCGTCACCAAAACCATATCCATGACATCCTTCGAAGAGGTCCCAGGCACATTCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
---------------------S----------------------S-SS------S-------------------------
----S-----------------------------------------S--------------------------------S
--------------S------------S----------------------------------------------------
--------------------------------------------------------S-------------------S---
----------------------S---------------------------S----------------------S------
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--------------------S-----------------------------------------------------------
------------------------------------------------------S-------------------------
--------------S---S--------------------------------------------------S----------
------------------------------------S-----------------------S-------------------
-----S-------------------------------------S-----------------------------S------
----------------------------------------------------------------SSSSSSSSS-------
----------------------------------------------------------------------S---------
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--------------------S----------SS-----------------------------------------------
----------------------S-----------SSS-------------------------------------------
----------------------------SS---------------S--------------------------------S-
----------------S------------S-SS-SSSSSSSSSSSSSSSSSSSS--------------------------
------------------------S-S----------------------S-----------S----------------S-
---------------------------------------------------------------S----------------
-------------------S-----S------------------------------------------------------
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--------------------------------------------------------------S------S----------
-------------------------------------SSSSS--------------------------------------
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------------------S----------------------------------------------------
>forward_160
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------------------------------------------------------------AGAAACGTGCGCACAGTTTC
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>reverse_1030
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---------------------------------------------------------------------ACAGATGCAAC
TCACCCCAA-----------------------------------------------------------------------
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>forward_167
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-------------------------------------------------------------------TGCGCACAGTTTC
CTCTCAA-------------------------------------------------------------------------
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>reverse_1777
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----------------CGAACCTCTGCTGCCATTCA--------------------------------------------
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